BAC Information

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BAC

Clone NameB6Ng01-084M09
Chromosome5 (Build37)
Map Location 89,490,866 - 89,652,691
singlet/doubletdoublet
Overlap geneSlc4a4
Upstream geneEG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084M09.bB6Ng01-084M09.g
ACCDH898628DH898629
length1,131113
definitionDH898628|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M09, 5' end.DH898629|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,490,866 - 89,492,009)(89,652,579 - 89,652,691)
sequence
gaattcagtaaataaattttggagaatttgactaaatgaaatatgttctc
tggctctaatgtcttcttaaagggtttagaactaatttaggaaagagatg
gactttccagagtgcacaattctgcaagttcaatctcaagactgcttcct
gaaccccgactctcagtctgctgtgctgatggcaaaggatgacggaaccc
ccagacagggattagagagcccatggtaaatgctgtttgtctaaagtgag
ttaagggcatgggtcacatgtgctgaaatgcttgttagaggaaagcacgg
tggggcatgccaacataggaaaatatgttggaagccaatgataggctgag
agaaaactgttgcagattttgatgtccacagttaacaaagaagatgtgaa
catttgaaatcgagaagttaaggtaaaataattgagcccaggtgtggagg
cttctggaaagaattttttagtatggaggtagcagggggagaactgtgga
taacagcagtggatttgggaccattcttggcctttgaccagtagagggct
ggacatccactgtggtagaccagagatgaaggaaattaaagactgggcta
gattctgacttcagaagccggaagggagggataatgcaggatgatgtcat
ggtggaacaactttcagtgtcagcaaagggaacgagtctgggaggattgg
gtttctgaactttaaccaggacggtgctgagagaataactctgggaaatg
tcgatgggtatacagaaacacagctgtgcagagttctccttccatccagc
acactgtcgccatcttagaagatttacatcattgggggctgacattatta
atttctgctatgctatcacattcttaggtgagctccctcatctttctttg
gcttggagagtaaccaccacatgagagctgtggtgctatttcactgccta
tctcaggccaaacatttccctttcacccctttggcctgttcttcacagtg
tccagatacggacttgtttctgatgttgactatcattgggctacttgctg
aagagttcacctaggattttggcttttaaagccaaaaaattcagtgtaac
ttggaaacttttctcacttaattatctagac
aagacaaaaaggaagagcaggagtgtgaaaaagggcatggggaggaagag
gtaaagaggagaaggactgggacgagcagcaggaggaggagggggggcag
ggggagggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89490866_89492009
seq2: B6Ng01-084M09.b_48_1178

seq1  GAATTCAGTAAATAAATTTTGGAGAATTTGACTAAATGAAATATGTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAATAAATTTTGGAGAATTTGACTAAATGAAATATGTTCTC  50

seq1  TGGCTCTAATGTCTTCTTAAAGGGTTTAGAACTAATTTAGGAAAGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTAATGTCTTCTTAAAGGGTTTAGAACTAATTTAGGAAAGAGATG  100

seq1  GACTTTCCAGAGTGCACAATTCTGCAAGTTCAATCTCAAGACTGCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCAGAGTGCACAATTCTGCAAGTTCAATCTCAAGACTGCTTCCT  150

seq1  GAACCCCGACTCTCAGTCTGCTGTGCTGATGGCAAAGGATGACGGAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCGACTCTCAGTCTGCTGTGCTGATGGCAAAGGATGACGGAACCC  200

seq1  CCAGACAGGGATTAGAGAGCCCATGGTAAATGCTGTTTGTCTAAAGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGGATTAGAGAGCCCATGGTAAATGCTGTTTGTCTAAAGTGAG  250

seq1  TTAAGGGCATGGGTCACATGTGCTGAAATGCTTGTTAGAGGAAAGCACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCATGGGTCACATGTGCTGAAATGCTTGTTAGAGGAAAGCACGG  300

seq1  TGGGGCATGCCAACATAGGAAAATATGTTGGAAGCCAATGATAGGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATGCCAACATAGGAAAATATGTTGGAAGCCAATGATAGGCTGAG  350

seq1  AGAAAACTGTTGCAGATTTTGATGTCCACAGTTAACAAAGAAGATGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGTTGCAGATTTTGATGTCCACAGTTAACAAAGAAGATGTGAA  400

seq1  CATTTGAAATCGAGAAGTTAAGGTAAAATAATTGAGCCCAGGTGTGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAATCGAGAAGTTAAGGTAAAATAATTGAGCCCAGGTGTGGAGG  450

seq1  CTTCTGGAAAGAATTTTTTAGTATGGAGGTAGCAGGGGGAGAACTGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAAAGAATTTTTTAGTATGGAGGTAGCAGGGGGAGAACTGTGGA  500

seq1  TAACAGCAGTGGATTTGGGACCATTCTTGGCCTTTGACCAGTAGAGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAGTGGATTTGGGACCATTCTTGGCCTTTGACCAGTAGAGGGCT  550

seq1  GGACATCCACTGTGGTAGACCAGAGATGAAGGAAATTAAAGACTGGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCCACTGTGGTAGACCAGAGATGAAGGAAATTAAAGACTGGGCTA  600

seq1  GATTCTGACTTCAGAAGCCGGAAGGGAGGGATAATGCAGGATGATGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGACTTCAGAAGCCGGAAGGGAGGGATAATGCAGGATGATGTCAT  650

seq1  GGTGGAACAACTTTCAGTGTCAGCAAAGGGAACGAGTCTGGGAGGATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAACAACTTTCAGTGTCAGCAAAGGGAACGAGTCTGGGAGGATTGG  700

seq1  G-TTCTGAACTTTAACCAGGACGGTGCTGAGAGAATAACTCTGGGAAATG  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAACTTTAACCAGGACGGTGCTGAGAGAATAACTCTGGGAAATG  750

seq1  TCGATGGGTATACAGAAACACAGCTGTGCAGAGTTCTCCTTCCATCCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGGGTATACAGAAACACAGCTGTGCAGAGTTCTCCTTCCATCCAGC  800

seq1  ACACTGTCGCCATCTTAGAAGATTTACATCATTGGGGGCTGACATTATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACACTGTCGCCATCTTAGAAGATTTACATCATTGGGGGCTGACATTATT-  849

seq1  AATTTCTGCTATGCTATCACATTCTTAGGTGAGCTCCCTCAGCCTTTCTT  899
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AATTTCTGCTATGCTATCACATTCTTAGGTGAGCTCCCTCA-TCTTTCTT  898

seq1  TGGCTTGGAGAGTAACCACCACATGAGAGCTGT-GTGCTATTTCACTGCC  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGCTTGGAGAGTAACCACCACATGAGAGCTGTGGTGCTATTTCACTGCC  948

seq1  TTATCCTCAGGCCAAACATTTCCCTTTCACCCCTCTGGCCTGTTCTTCAC  998
       ||| ||||||||||||||||||||||||||||| |||||||||||||| 
seq2  -TAT-CTCAGGCCAAACATTTCCCTTTCACCCCTTTGGCCTGTTCTTCA-  995

seq1  CAGTGTCCAGATACGGACTTGTTTCTGAATGTGACTATCATTTGGGCTAC  1048
      ||||||||||||||||||||||||||||   ||||||||| |||||||||
seq2  CAGTGTCCAGATACGGACTTGTTTCTGATGTTGACTATCA-TTGGGCTAC  1044

seq1  TTGCTGAAGAGTTTCACCTAAGGATTTTGGCTTTTAAAAGCCAAAAGAAA  1098
      ||||||||||| ||||||| ||||||||||||||| ||||||||   |||
seq2  TTGCTGAAGAG-TTCACCT-AGGATTTTGGCTTTT-AAAGCCAA---AAA  1088

seq1  ATTCAAGTGTAACTTTGAAACTTTTCTCACTATAATTATCCTAGAC  1144
      |||| |||||||||| ||||||||||||||| ||||||| ||||||
seq2  ATTC-AGTGTAACTTGGAAACTTTTCTCACT-TAATTAT-CTAGAC  1131

seq1: chr5_89652579_89652691
seq2: B6Ng01-084M09.g_75_187 (reverse)

seq1  CCTCCCCCTCCCCCTGCCCCCCCTCCTCCTCCTGCTGCTCGTCCCAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTCCCCCTGCCCCCCCTCCTCCTCCTGCTGCTCGTCCCAGTCC  50

seq1  TTCTCCTCTTTACCTCTTCCTCCCCATGCCCTTTTTCACACTCCTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTTTACCTCTTCCTCCCCATGCCCTTTTTCACACTCCTGCTCT  100

seq1  TCCTTTTTGTCTT  113
      |||||||||||||
seq2  TCCTTTTTGTCTT  113