BAC Information

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BAC

Clone NameB6Ng01-084P12
Chromosome5 (Build37)17 (Build37)
Map Location 145,028,797 - 145,029,90356,883,391 - 56,883,548
singlet/doubletsingletsinglet
Overlap geneBaiap2l1
Upstream geneZfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084P12.bB6Ng01-084P12.g
ACCDH898772DH898773
length1,111455
definitionDH898772|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P12, 5' end.DH898773|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,028,797 - 145,029,903)(56,883,391 - 56,883,548)
sequence
gaattcacctgatagatacactctcagccagaggcaggctggaggcacct
gggccgtgacctcagcctctgggttgcctggagtcggcacagtcatctag
cacaggacttagtgtatactcatcacaagcacaaagccactgcctggctt
ggcacattttaatcaggcttcaagtggtgtgaagtgatttcttcctgcag
ggcactctgtttctttagcgggcctctggacaagtcacctctgatgtaac
ttcatttgatagggatcgttaagagccaatttatgatttctttttaaagg
acatcaggaggtctggcctgtcgattgcctgctcaaattgctggcatgat
tggactgcctggagcagtatgccaggcaacagtctgagtctggaaggagc
cccttggtgcccagaagtcagaccagcaatgcagcctcgcagccccaggc
tgcctcagttaacataagcagactcttcccatagaaaaacactcccttct
gttttcctctgggcaaacactgacctatcctgtgtggccttagaaggaca
gcaccagatcctcaactggagactagcctgctctctacccgacagcacct
gctgtaacctcctaaaaccacacgctcagtgcgttttaaggtgcctcacc
acactctgaactcttacagccccaggtagaaacgaccaaaagtccggcag
gaaaccagcacttgacttttatgcattctgtccctgtgagatctcagtgc
caggccatggggatcctggccgtagagaagagacagtaactatggggcac
acaggaagtcccggttttctcagaatgatgtttcttaatctgtttctgat
tctacagtcacttcaagaaaattcactttaaaggccaggtcctggtatcc
ggtgctcgcatgcccaggcctttggcaggctaagaagaggaagagagaga
gagtctgaggccattctgggccacatagaacccttgactcaattcccaag
atctcgggatgtagttcagctggtaggccctggggtttcatccagcacat
caataaactggtcatggtggcatcaagctataatcctcagcactggggaa
gtggaggcaag
ctttcattcccccaccaccaccacccccaggaggaggtcatacatttaca
ccacactttcaaagacatctctaaagtagaccaataataaatgatccaga
gtgtggctcaggttggtagggtgcttgcttctcaagcaggtaatccaggc
tgtggctggagccaggatgggcttgtaggaggaagtggaggactggccca
catggtgactcacaaccatctgtaatgggatctgatgccctcttctggtg
tctctgaaaacagctaccatgtactcgaagaaagaaagaaagaaagaaag
aaagaaagaaagagagagagagagagagagagagagagagagagagagag
agagagagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagagagaaagagagagagagagagagagagggagggagggaggg
aggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145028797_145029903
seq2: B6Ng01-084P12.b_43_1153

seq1  GAATTCACCTGATAGATACACTCTCAGCCAGAGGCAGGCTGGAGGCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGATAGATACACTCTCAGCCAGAGGCAGGCTGGAGGCACCT  50

seq1  GGGCCGTGACCTCAGCCTCTGGGTTGCCTGGAGTCGGCACAGTCATCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGTGACCTCAGCCTCTGGGTTGCCTGGAGTCGGCACAGTCATCTAG  100

seq1  CACAGGACTTAGTGTATACTCATCACAAGCACAAAGCCACTGCCTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACTTAGTGTATACTCATCACAAGCACAAAGCCACTGCCTGGCTT  150

seq1  GGCACATTTTAATCAGGCTTCAAGTGGTGTGAAGTGATTTCTTCCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTTTAATCAGGCTTCAAGTGGTGTGAAGTGATTTCTTCCTGCAG  200

seq1  GGCACTCTGTTTCTTTAGCGGGCCTCTGGACAAGTCACCTCTGATGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTGTTTCTTTAGCGGGCCTCTGGACAAGTCACCTCTGATGTAAC  250

seq1  TTCATTTGATAGGGATCGTTAAGAGCCAATTTATGATTTCTTTTTAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGATAGGGATCGTTAAGAGCCAATTTATGATTTCTTTTTAAAGG  300

seq1  ACATCAGGAGGTCTGGCCTGTCGATTGCCTGCTCAAATTGCTGGCATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGAGGTCTGGCCTGTCGATTGCCTGCTCAAATTGCTGGCATGAT  350

seq1  TGGACTGCCTGGAGCAGTATGCCAGGCAACAGTCTGAGTCTGGAAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCCTGGAGCAGTATGCCAGGCAACAGTCTGAGTCTGGAAGGAGC  400

seq1  CCCTTGGTGCCCAGAAGTCAGACCAGCAATGCAGCCTCGCAGCCCCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTGCCCAGAAGTCAGACCAGCAATGCAGCCTCGCAGCCCCAGGC  450

seq1  TGCCTCAGTTAACATAAGCAGACTCTTCCCATAGAAAAACACTCCCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTTAACATAAGCAGACTCTTCCCATAGAAAAACACTCCCTTCT  500

seq1  GTTTTCCTCTGGGCAAACACTGACCTATCCTGTGTGGCCTTAGAAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCTGGGCAAACACTGACCTATCCTGTGTGGCCTTAGAAGGACA  550

seq1  GCACCAGATCCTCAACTGGAGACTAGCCTGCTCTCTACCCGACAGCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGATCCTCAACTGGAGACTAGCCTGCTCTCTACCCGACAGCACCT  600

seq1  GCTGTAACCTCCTAAAACCACACGCTCAGTGCGTTTTAAGGTGCCTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAACCTCCTAAAACCACACGCTCAGTGCGTTTTAAGGTGCCTCACC  650

seq1  ACACTCTGAACTCTTACAGCCCCAGGTAGAAACGACCAAAAGTCCGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGAACTCTTACAGCCCCAGGTAGAAACGACCAAAAGTCCGGCAG  700

seq1  GAAACCAGCACTTGACTTTTATGCATTCTGTCCCTGTGAGATCTCAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGCACTTGACTTTTATGCATTCTGTCCCTGTGAGATCTCAGTGC  750

seq1  CAGGCCATGGGGATCCTGGCCGTAGAGAAGAGACAGTAACTATGGGGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATGGGGATCCTGGCCGTAGAGAAGAGACAGTAACTATGGGGCAC  800

seq1  ACAGGAAGTCCCGGTTTTCTCAGAATGATGTTTCTTAATCTGTTTCTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGTCCCGGTTTTCTCAGAATGATGTTTCTTAATCTGTTTCTGAT  850

seq1  TCTACAGTCACTTCAAGAAAATTCACTTT-AAGGCCAGGT-CTGGTATCC  898
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  TCTACAGTCACTTCAAGAAAATTCACTTTAAAGGCCAGGTCCTGGTATCC  900

seq1  GGTGCTCGCATGCCCA-GCCCTTGGCAGGCTAAGAAGA-GAAGAGAAGAG  946
      |||||||||||||||| ||| ||||||||||||||||| |||||| ||||
seq2  GGTGCTCGCATGCCCAGGCCTTTGGCAGGCTAAGAAGAGGAAGAG-AGAG  949

seq1  AAGAGTCTGAGGCCATTCTGGGCCACATAGA--CCCTGACTCAATTCCCA  994
       ||||||||||||||||||||||||||||||  || ||||||||||||| 
seq2  -AGAGTCTGAGGCCATTCTGGGCCACATAGAACCCTTGACTCAATTCCC-  997

seq1  AAGATCTCGGGATGTAGTTCAGCTGGTAGGCCCT-GGGTTTCATTCCCAG  1043
      |||||||||||||||||||||||||||||||||| |||||||||  ||||
seq2  AAGATCTCGGGATGTAGTTCAGCTGGTAGGCCCTGGGGTTTCAT--CCAG  1045

seq1  CACATC-ATAAACTGGCCATGGTGGCATCAAGCTATAAT-CTCAGCACTG  1091
      |||||| ||||||||| |||||||||||||||||||||| ||||||||||
seq2  CACATCAATAAACTGGTCATGGTGGCATCAAGCTATAATCCTCAGCACTG  1095

seq1  GGGAAGTGGAGGCAGG  1107
      |||||||||||||| |
seq2  GGGAAGTGGAGGCAAG  1111

seq1: chr17_56883391_56883548
seq2: B6Ng01-084P12.g_355_532 (reverse)

seq1  TCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTTTCTCTCTTTCTCTC  50
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTC--TCTCTCTTTCTCTC  48

seq1  TTTCTTTCTCTCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTT----  96
      ||||||||| ||||||| ||| ||| ||||||||||||||||||||    
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTC  98

seq1  ------------------TCTTTCTTTCTTTCTTTCTCTCTCTCTCTTTC  128
                        ||| ||| ||| ||| ||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  148

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  158
      ||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  178