BAC Information

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BAC

Clone NameB6Ng01-085D05
Chromosome5 (Build37)
Map Location 79,168,720 - 79,304,323
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085D05.bB6Ng01-085D05.g
ACCDH898938DH898939
length1,1751,138
definitionDH898938|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D05, 5' end.DH898939|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,168,720 - 79,169,908)(79,303,173 - 79,304,323)
sequence
gaattcaaatttatattactttcaggtaagtatttattttcagaaacttc
tactttagtaggtttccatatgaccctgtgaatggctgggagttttaact
gtctctccctatactctcttcctgctctccttctctcctcctccccattg
gaccctcccacttcagcttccacaagaggattattagaattataaatgta
ttcatattgaagttttagttttactaaggccttagattaaaatttagcct
gcctaaaatgctttataccactaagcatgactgactcttgctaagtccct
aatcacatttacgccccttctctcctcttatcacccagttatttatatgg
atggttgaatttataaacatatctttattcagtttaaatgagcatgctaa
acttaggaccttagtaaatagagccccagtcctctttacctgattttcct
cttttcattctcattattcttctatgcctgttaaagaatgtagccttcct
cagagcttctaatggctatttgtggtgtgtttggtgtattccatgaagta
aaagactgtgattgttttggatgtgctatcatttcctgttaagtattcat
tatggtattgctatactacagatgttcagtaagtatatttccgactgagt
gatttcccattacaaacatattaaacaactaatggtcaatacaactaaca
taaattaagcttgacaagacatttaatgtgtctgtcttatattatatttt
attcacttaaaatataatgttatctaccctctttttcacccatcttctct
cttctgctcctctcctttcttcctttctttgatatttatagcctattttt
ctttaattactctgggtacacaccatacataagaaacaaaaagcaaataa
gcaaacaaaacaatcaacagcattattctttaccaggaagagggatatcg
tatatgtgtttaacattccataccatgtgatggttcaccccagtttcatt
gtgcttcagaattttagcaattgcatattgtaataaatcatttcctttgg
acaatgcctcccttttgcattattcaatggctacatgtaagaaatttcta
tattccatatgtttattcatttatctcaaagatatcagtttccaatagtc
gaacatatttagtaggtattatgga
gaattccttgtaaaaatattctattgccactggtgatcttctcagttttt
tgagaacatgttacggtggagtgtgatgacctgtaacataccgagcattt
ttattttacaaagtagtgttgtttctcttcatcatcatacacagccacaa
gaaggcaggatttcatgatttacctctacaaccataaaaccttgcatttg
tattttacaaagtagtgttgtttctcttcatcatcatacacagccacaag
aaggcaggctttcatgatttacctctacaaccacaaaacctctcatttac
ctccccccatttttttagacaatcaataaagattttctgaggggataatg
gaatagtgtacctaatgaaaaactcaattaaacttaaaagatacaacttt
catacaaataaacagaatatgattctgtgattgatttaataaatcctgcc
tgtcttgaattttcagaaataagtcaaaaaacactgagatctataaagtg
attaccttaagttaatattaattttctggaatataacagtgacatatttt
agtctagttttgtgtatatgctttaaggccaaattctgaaaatgtaacag
tctttacaaaaatgtttaggtatatatggagacagaaatactaggaaaat
gtgaatttcattaccacatatattttaatttctatacagtaaaggaatat
taaattgaagaaaacccttgaaagtagtttaacaaaggtctgagtttgct
ttattttaaataacactgtaattagggcaaataacaaggttatgaggcaa
gtaacattttagaaattgtggaggaagctgtgattctggctgtgccaaaa
taaataaaccaaaatataaaaataactcagagtagaacaagcaaagaaat
gatatcattaacaaccaacttaggtagtacttttcacaagtaaggcaaaa
tactatttccagagacacacatggcacgtggtataaaagctcataataag
agaagaaatgtgaatattgttcattatatttcagatcagtaatgattcta
cactctaacgaaaggcatatatcgaaatctctgggctttatatgagaagc
caaaaaacaaaagattctctgcactactgatttgttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79168720_79169908
seq2: B6Ng01-085D05.b_45_1219

seq1  GAATTCAAATTTATATTACTTTCAGGTAAGTATTTATTTTCAGAAACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTTATATTACTTTCAGGTAAGTATTTATTTTCAGAAACTTC  50

seq1  TACTTTAGTAGGTTTCCATATGACCCTGTGAATGGCTGGGAGTTTTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAGTAGGTTTCCATATGACCCTGTGAATGGCTGGGAGTTTTAACT  100

seq1  GTCTCTCCCTATACTCTCTTCCTGCTCTCCTTCTCTCCTCCTCCCCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCCTATACTCTCTTCCTGCTCTCCTTCTCTCCTCCTCCCCATTG  150

seq1  GACCCTCCCACTTCAGCTTCCACAAGAGGATTATTAGAATTATAAATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCCCACTTCAGCTTCCACAAGAGGATTATTAGAATTATAAATGTA  200

seq1  TTCATATTGAAGTTTTAGTTTTACTAAGGCCTTAGATTAAAATTTAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTGAAGTTTTAGTTTTACTAAGGCCTTAGATTAAAATTTAGCCT  250

seq1  GCCTAAAATGCTTTATACCACTAAGCATGACTGACTCTTGCTAAGTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAATGCTTTATACCACTAAGCATGACTGACTCTTGCTAAGTCCCT  300

seq1  AATCACATTTACGCCCCTTCTCTCCTCTTATCACCCAGTTATTTATATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATTTACGCCCCTTCTCTCCTCTTATCACCCAGTTATTTATATGG  350

seq1  ATGGTTGAATTTATAAACATATCTTTATTCAGTTTAAATGAGCATGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAATTTATAAACATATCTTTATTCAGTTTAAATGAGCATGCTAA  400

seq1  ACTTAGGACCTTAGTAAATAGAGCCCCAGTCCTCTTTACCTGATTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGACCTTAGTAAATAGAGCCCCAGTCCTCTTTACCTGATTTTCCT  450

seq1  CTTTTCATTCTCATTATTCTTCTATGCCTGTTAAAGAATGTAGCCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTCTCATTATTCTTCTATGCCTGTTAAAGAATGTAGCCTTCCT  500

seq1  CAGAGCTTCTAATGGCTATTTGTGGTGTGTTTGGTGTATTCCATGAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTCTAATGGCTATTTGTGGTGTGTTTGGTGTATTCCATGAAGTA  550

seq1  AAAGACTGTGATTGTTTTGGATGTGCTATCATTTCCTGTTAAGTATTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTGATTGTTTTGGATGTGCTATCATTTCCTGTTAAGTATTCAT  600

seq1  TATGGTATTGCTATACTACAGATGTTCAGTAAGTATATTTCCGACTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATTGCTATACTACAGATGTTCAGTAAGTATATTTCCGACTGAGT  650

seq1  GATTTCCCATTACAAACATATTAAACAACTAATGGTCAATACAACTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCATTACAAACATATTAAACAACTAATGGTCAATACAACTAACA  700

seq1  TAAATTAAGCTTGACAAGACATTTAATGTGTCTGTCTTATATTATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAGCTTGACAAGACATTTAATGTGTCTGTCTTATATTATATTTT  750

seq1  ATTCACTTAAAATATAATGTTATCTACCCTCTTTTTCACCCATCTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTAAAATATAATGTTATCTACCCTCTTTTTCACCCATCTTCTCT  800

seq1  CTTCTGCTCCTCTCCTTTCTTCCTTTCTTTGATATTTATAGCCTATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCCTCTCCTTTCTTCCTTTCTTTGATATTTATAGCCTATTTTT  850

seq1  CTTTAATTACTCTGGGTACACACCATACATAAGAAACAAAAAGCAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTACTCTGGGTACACACCATACATAAGAAACAAAAAGCAAATAA  900

seq1  GCAAACAAAACAATCAACAGCATTATTCTTTACCAGGAAGAGGGATATCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAAACAATCAACAGCATTATTCTTTACCAGGAAGAGGGATATCG  950

seq1  TATATGTGTTTAACATTCCATACCATGTGATGGTTCACCCCAGTTTTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATATGTGTTTAACATTCCATACCATGTGATGGTTCACCCCAG-TTTCAT  999

seq1  TGTGCTTCAGAATTTTAGCAATTGCATTATTGT-ATATATCATTTCCTTT  1049
      |||||||||||||||||||||||||| |||||| ||| ||||||||||||
seq2  TGTGCTTCAGAATTTTAGCAATTGCA-TATTGTAATAAATCATTTCCTTT  1048

seq1  GGACATTG-CTCACTTTTGCATTATCAAATGGCTAACATGTAAAAGAATT  1098
      ||||| || ||| ||||||||||||  ||||||| |||||||| | ||||
seq2  GGACAATGCCTCCCTTTTGCATTATTCAATGGCT-ACATGTAAGA-AATT  1096

seq1  TCTATAATTTCCATATGTTTTATTTCATTTAATTCTCAGAGATAATCCAG  1148
      ||||||  ||||||||||||   ||||||||  ||||| |||||   |||
seq2  TCTATA--TTCCATATGTTT--ATTCATTTA--TCTCAAAGATA--TCAG  1138

seq1  TTTCACATAGTTCAGAAACATATTTAGTAAGTATTAATGGA  1189
      ||||  |||||     ||||||||||||| ||||| |||||
seq2  TTTCCAATAGT---CGAACATATTTAGTAGGTATT-ATGGA  1175

seq1: chr5_79303173_79304323
seq2: B6Ng01-085D05.g_71_1208 (reverse)

seq1  GTAACAAAATCAGTAGGTGCAGAGAATCTTTTTGTGTTTTTGGCTTCTTC  50
      ||||| ||||||||| |||||||||||| |||||| ||||||||||| ||
seq2  GTAAC-AAATCAGTA-GTGCAGAGAATC-TTTTGT-TTTTTGGCTTC-TC  45

seq1  ATTATAAGCCCAGGGATTTTCGTATATTGCCTTCTCGTTAGGGTGTAG-A  99
      ||   |||||||| |||||   |||| |||||| ||||||| |||||| |
seq2  ATATAAAGCCCAGAGATTTCGATATA-TGCCTT-TCGTTAGAGTGTAGAA  93

seq1  TCATTTACTGATCTG-AATATAATGAAC-ATATTCACATTTCCTTCTCTG  147
      ||| ||||||||||| |||||||||||| |||||||||||| ||||||| 
seq2  TCA-TTACTGATCTGAAATATAATGAACAATATTCACATTT-CTTCTCT-  140

seq1  TATTATGGAGCTTTTATAACCACGTGCCATGTGTGTCTCTGGAAATAGTA  197
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  TATTAT-GAGCTTTTAT-ACCACGTGCCATGTGTGTCTCTGGAAATAGTA  188

seq1  TTTTTGCCTTACTTGTGGAAAAGTTACTACCTAAGTTGGTTGTTAATGAT  247
       ||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  -TTTTGCCTTACTTGT-GAAAAG-TACTACCTAAGTTGGTTGTTAATGAT  235

seq1  ATCATTTCTTTGCTTGTTCTACTCCTGAGTTATTTTTATATTTTGGTTTA  297
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCATTTCTTTGCTTGTTCTACT-CTGAGTTATTTTTATATTTTGGTTTA  284

seq1  TTTATTTTGGCACAGCCAGAATCACAGCTTCCTCCACAATTTCTAAAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGGCACAGCCAGAATCACAGCTTCCTCCACAATTTCTAAAATG  334

seq1  TTACTTGCCTCATAACCTTGTTATTTGCCCTAATTACAGTGTTATTTAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCCTCATAACCTTGTTATTTGCCCTAATTACAGTGTTATTTAAA  384

seq1  ATAAAGCAAACTCAGACCTTTGTTAAACTACTTTCAAGGGTTTTCTTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAAACTCAGACCTTTGTTAAACTACTTTCAAGGGTTTTCTTCAA  434

seq1  TTTAATATTCCTTTACTGTATAGAAATTAAAATATATGTGGTAATGAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTCCTTTACTGTATAGAAATTAAAATATATGTGGTAATGAAAT  484

seq1  TCACATTTTCCTAGTATTTCTGTCTCCATATATACCTAAACATTTTTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTCCTAGTATTTCTGTCTCCATATATACCTAAACATTTTTGTA  534

seq1  AAGACTGTTACATTTTCAGAATTTGGCCTTAAAGCATATACACAAAACTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTTACATTTTCAGAATTTGGCCTTAAAGCATATACACAAAACTA  584

seq1  GACTAAAATATGTCACTGTTATATTCCAGAAAATTAATATTAACTTAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAATATGTCACTGTTATATTCCAGAAAATTAATATTAACTTAAGG  634

seq1  TAATCACTTTATAGATCTCAGTGTTTTTTGACTTATTTCTGAAAATTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTTTATAGATCTCAGTGTTTTTTGACTTATTTCTGAAAATTCAA  684

seq1  GACAGGCAGGATTTATTAAATCAATCACAGAATCATATTCTGTTTATTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGGATTTATTAAATCAATCACAGAATCATATTCTGTTTATTTG  734

seq1  TATGAAAGTTGTATCTTTTAAGTTTAATTGAGTTTTTCATTAGGTACACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGTTGTATCTTTTAAGTTTAATTGAGTTTTTCATTAGGTACACT  784

seq1  ATTCCATTATCCCCTCAGAAAATCTTTATTGATTGTCTAAAAAAATGGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTATCCCCTCAGAAAATCTTTATTGATTGTCTAAAAAAATGGGG  834

seq1  GGAGGTAAATGAGAGGTTTTGTGGTTGTAGAGGTAAATCATGAAAGCCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAATGAGAGGTTTTGTGGTTGTAGAGGTAAATCATGAAAGCCTG  884

seq1  CCTTCTTGTGGCTGTGTATGATGATGAAGAGAAACAACACTACTTTGTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGTGGCTGTGTATGATGATGAAGAGAAACAACACTACTTTGTAA  934

seq1  AATACAAATGCAAGGTTTTATGGTTGTAGAGGTAAATCATGAAATCCTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATGCAAGGTTTTATGGTTGTAGAGGTAAATCATGAAATCCTGC  984

seq1  CTTCTTGTGGCTGTGTATGATGATGAAGAGAAACAACACTACTTTGTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTGGCTGTGTATGATGATGAAGAGAAACAACACTACTTTGTAAA  1034

seq1  ATAAAAATGCTCGGTATGTTACAGGTCATCACACTCCACCGTAACATGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGCTCGGTATGTTACAGGTCATCACACTCCACCGTAACATGTT  1084

seq1  CTCAAAAAACTGAGAAGATCACCAGTGGCAATAGAATATTTTTACAAGGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAACTGAGAAGATCACCAGTGGCAATAGAATATTTTTACAAGGA  1134

seq1  ATTC  1151
      ||||
seq2  ATTC  1138