BAC Information

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BAC

Clone NameB6Ng01-085F02
Chromosome5 (Build37)11 (Build37)
Map Location 125,892,885 - 125,893,017120,040,079 - 120,040,853
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSetd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc
Downstream geneDhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085F02.bB6Ng01-085F02.g
ACCDH899024DH899025
length395778
definitionDH899024|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F02, 5' end.DH899025|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(125,892,885 - 125,893,017)(120,040,079 - 120,040,853)
sequence
agccaggcctccctgagaccctgtttgtttgtttgttcgtttgttttttg
tttttttaaagtggatgggggttggtgggactggagagtggttaagagta
gagaacctagttctcagtacctgtaactctagttccagggcaccccatgc
ccttttctggcttctgggctcctgcaagaactgttgcatataaatcgttg
catataaattcatctaggcaaacacacattaacaaaataattttagccag
gcagtggtggcgcatgcctttaatcccaatacttgggaggcagaggctga
gttcaaggccagcctgttctacagagtgagttccaggacagctaacagtt
atacagagaaatcctgtgaataaataaaaacaaccccaaaataat
gaattcagctctgctttccccaactgtcacctcgcagtggccatagcaac
tatttccacggctgaggtttggcttgttcatcatgaaacacaatgtcagc
aaaatggactggtcagcccaagtggctgctgggtgagcaggagctcccat
acttggcccagcaggcaggtgccaatgtgtggggtggcagacaggctctg
ggactttgatgactggcagtgtctccacctctgtgtgcctggggatacgg
agatggaggtgtaggtgagagttacccacatcctctccccatgtccctat
gcttcatagcaggcagactttgggggtactgtcatcctcgggcatagtat
ctagattcccgacatgaaaactttccaatctttgaattgggaataattgt
aataaacagatggtcccaggctaatgttgatttgacctaagaattttgtc
ttctgctaggcggtggtggtgcacacctttgatcccagcactcaggagac
agaggcacatgagtctctcagttcgaggccagcctgatctccagagtaag
ttctaggacagccaggctacacagaaaaatcctgtcccaaaaactcgaaa
agaagaagaaagaggattttgtcttcttgctggtgtgaaagtgtgacaca
ttcagaatctgcacttttgaattttgacctttccctgacttttgctaaga
ggtctaatcctgaaggactggagaggtggctcattggttaagagaattta
ctgcttcttacggagaatgctagttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125892885_125893017
seq2: B6Ng01-085F02.b_299_421 (reverse)

seq1  ACAGGGTTTCTCTGTGTAGC-CCTGGCTGTCCTGGAACTCACTCTGTAGA  49
      ||||| ||||||||| || |   | |||||||||||||||||||||||||
seq2  ACAGGATTTCTCTGTATAACTGTTAGCTGTCCTGGAACTCACTCTGTAGA  50

seq1  CCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCTTCTGCCTCCCAAGTGC  99
       |||||||||||  ||||||           || ||||||||||||||  
seq2  ACAGGCTGGCCTTGAACTCA-----------GCCTCTGCCTCCCAAGTAT  89

seq1  TGGGACTAAAGGCATGCGCCACCACTGCCCGGCT  133
      ||||| ||||||||||||||||||||||| ||||
seq2  TGGGATTAAAGGCATGCGCCACCACTGCCTGGCT  123

seq1: chr11_120040079_120040853
seq2: B6Ng01-085F02.g_69_846

seq1  GAATTCAGCTCTGCTTTCCCCAACTGTCACCTCGCAGTGGCCATAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCTGCTTTCCCCAACTGTCACCTCGCAGTGGCCATAGCAAC  50

seq1  TATTTCCACGGCTGAGGTTTGGCTTGTTCATCATGAAACACAATGTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACGGCTGAGGTTTGGCTTGTTCATCATGAAACACAATGTCAGC  100

seq1  AAAATGGACTGGTCAGCCCAAGTGGCTGCTGGGTGAGCAGGAGCTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACTGGTCAGCCCAAGTGGCTGCTGGGTGAGCAGGAGCTCCCAT  150

seq1  ACTTGGCCCAGCAGGCAGGTGCCAATGTGTGGGGTGGCAGACAGGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCCAGCAGGCAGGTGCCAATGTGTGGGGTGGCAGACAGGCTCTG  200

seq1  GGACTTTGATGACTGGCAGTGTCTCCACCTCTGTGTGCCTGGGGATACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGATGACTGGCAGTGTCTCCACCTCTGTGTGCCTGGGGATACGG  250

seq1  AGATGGAGGTGTAGGTGAGAGTTACCCACATCCTCTCCCCATGTCCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGTGTAGGTGAGAGTTACCCACATCCTCTCCCCATGTCCCTAT  300

seq1  GCTTCATAGCAGGCAGACTTTGGGGGTACTGTCATCCTCGGGCATAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAGCAGGCAGACTTTGGGGGTACTGTCATCCTCGGGCATAGTAT  350

seq1  CTAGATTCCCGACATGAAAACTTTCCAATCTTTGAATTGGGAATAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTCCCGACATGAAAACTTTCCAATCTTTGAATTGGGAATAATTGT  400

seq1  AATAAACAGATGGTCCCAGGCTAATGTTGATTTGACCTAAGAATTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGATGGTCCCAGGCTAATGTTGATTTGACCTAAGAATTTTGTC  450

seq1  TTCTGCTAGGCGGTGGTGGTGCACACCTTTGATCCCAGCACTCAGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAGGCGGTGGTGGTGCACACCTTTGATCCCAGCACTCAGGAGAC  500

seq1  AGAGGCACATGAGTCTCTCAGTTCGAGGCCAGCCTGATCTCCAGAGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACATGAGTCTCTCAGTTCGAGGCCAGCCTGATCTCCAGAGTAAG  550

seq1  TTCTAGGACAGCCAGGCTACACAGAAAAATCCTGTCCCAAAAACTCGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGACAGCCAGGCTACACAGAAAAATCCTGTCCCAAAAACTCGAAA  600

seq1  AGAAGAAGAAAGAGGATTTTGTCTTCTTGCTGGTGTGAAAGTGTGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAAGAGGATTTTGTCTTCTTGCTGGTGTGAAAGTGTGACACA  650

seq1  TTCAGAAGCTGCAC-TTTGAATTTTGACCTTTCCCTGACTTTTGCTAAGA  699
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  TTCAGAATCTGCACTTTTGAATTTTGACCTTTCCCTGACTTTTGCTAAGA  700

seq1  GGTCTAATCCTG-AGGACTGGAGAGGTGGCTCAGTGGTTAAGAGAATTTA  748
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  GGTCTAATCCTGAAGGACTGGAGAGGTGGCTCATTGGTTAAGAGAATTTA  750

seq1  CTGC-TCTTACGGAGAATGCTAGTTCAG  775
      |||| |||||||||||||||||||||||
seq2  CTGCTTCTTACGGAGAATGCTAGTTCAG  778