BAC Information

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BAC

Clone NameB6Ng01-085I11
Chromosome5 (Build37)
Map Location 52,050,258 - 52,160,311
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085I11.bB6Ng01-085I11.g
ACCDH899178DH899179
length1,1761,061
definitionDH899178|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I11, 5' end.DH899179|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,050,258 - 52,051,463)(52,159,244 - 52,160,311)
sequence
gaattcataattcaaattcagaatttgagccccacccattgtcttctgac
ttcacatgtttgtagtggcacatgtatacccacctagatacacacaataa
atcagtcaatatttaaaaagaaagaacattggttaaatttgacagttatt
aagtttgtactgtgtgccagagaacaccaagtacagatgacttctccatt
ccatgctcaatgacaatgtcaggcactgactctctataggtaaaggtagg
ccctacaaaatataaggaaaatggcaaatgaagagagaggagaagtaccc
tgaattagcataccaataatgtcctaactatggtatctctgataactgcc
aatcagcaaatttctaccagaatgaatacaacacaatcgttggtcaaaaa
taaatttgtatctacaatatcggatttgaaattagtcattagctgcttat
tcgagtgactcagcacatattgttccaagttgaactgtgttgactatgtc
atcggctccattttacagatgttggaacaaaggctagaaaaaggcaaata
agttgcacaaaagcagacagttctccagcaactgacagattagaacaaac
acaagttgactagtaagtctacctgctgtcaggatggctgtcagctacat
agatggatgctgaactattggaaagtcagtggggattcagaacacagaac
aaagaaaacaatttctcctcccaagcagtacagtgtagtcatgtctggag
tgatgacactacccaatgtcctcctgtacctttaagggtaattttctcag
tggtgtcccagggacttaaaacaatccatcagacaactttccctttctaa
aaggatttcactattgaaaagttgtcatttgttttttggcatttcctctt
aagctaaaaaagacaggtaaagttgccagaaaatgtgaattgagataaag
gcctgggctggtcagatgctcagccatgagctagtactaagctgaggata
gaatgcagggacttcatttcagcaaacactctctgtgctaaggctctggc
tatttccctctgtcttgctacaggccatcccgcccactcatgtaatccca
tgtaatgaagtgctagtcaaggctcctgaccgatttaaatgttcgagtcc
gatcttggaattcttttcatctgcct
gaattccacataaaaccagagacactgaaacttatagaggagaaagtggg
gaaaaccctcgaagatatgggcacaggggaaaaattcctaaacagaacag
cgatggcctgtgctgcaagatcaagaatcaacaaatgggacctcataaaa
ttgcaaagcttctgtagggcaaaagataatgccaataagacaaaaaggcc
accaacagattgggaaagaatttttaccaatcctaaatctgatataggac
taatatccaatatatgcaaagagctcaagaagctgaactcccacaattca
aataaccccattaaaaatggggtacagagctaaacaaagaattatagttt
tttcttaatgataggaggaaacttcccactccttctttttcgccacacct
catgaaatttgacagacagctcccatgcagaaggaaaggaagtagagttc
agcttattggtaaacaaaggaagacggttggagtctatctgccctatgct
ccttcatatcctagtttttatcttctctgatatcaactcctaagactcca
ggaaaagaccagagcttctcagtgcctttagaaaaactagagtaatgaat
tacagggagaggctgattttaattgtcacccaaatgagatgtaatcatac
ccaaattctctttgtaaataattatcataccttgctttcttcccagaaaa
cttctgtagtggagaattgtctcaaccattttcctttcctcgtgtgtctg
taaagctcatttccccaagtcataataactgggatcctagtaatccaagg
aggttttcattatcttccatctttatgcaaaaatagaaaattgataatct
catcctttcctgaagctctttcacttcagcttagccaagtccacagtaag
gacctgaggcatcccaataatctttctaaaggataagtttgatgacatac
ttctatggtcagaatcctctattaatccatatcacccgcagattgagatc
atacacgttgatctataggatgctagctttttgaacattaaggtttatga
tgcctaggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_52050258_52051463
seq2: B6Ng01-085I11.b_44_1219

seq1  GAATTCATAATTCAAATTCAGAATTTGAGCCCCACCCATTGTCTTCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTCAAATTCAGAATTTGAGCCCCACCCATTGTCTTCTGAC  50

seq1  TTCACATGTTTGTAGTGGCACATGTATACCCACCTAGATACACACAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGTTTGTAGTGGCACATGTATACCCACCTAGATACACACAATAA  100

seq1  ATCAGTCAATATTTAAAAAGAAAGAACATTGGTTAAATTTGACAGTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAATATTTAAAAAGAAAGAACATTGGTTAAATTTGACAGTTATT  150

seq1  AAGTTTGTACTGTGTGCCAGAGAACACCAAGTACAGATGACTTCTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTACTGTGTGCCAGAGAACACCAAGTACAGATGACTTCTCCATT  200

seq1  CCATGCTCAATGACAATGTCAGGCACTGACTCTCTATAGGTAAAGGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTCAATGACAATGTCAGGCACTGACTCTCTATAGGTAAAGGTAGG  250

seq1  CCCTACAAAATATAAGGAAAATGGCAAATGAAGAGAGAGGAGAAGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAAAATATAAGGAAAATGGCAAATGAAGAGAGAGGAGAAGTACCC  300

seq1  TGAATTAGCATACCAATAATGTCCTAACTATGGTATCTCTGATAACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAGCATACCAATAATGTCCTAACTATGGTATCTCTGATAACTGCC  350

seq1  AATCAGCAAATTTCTACCAGAATGAATACAACACAATCGTTGGTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCAAATTTCTACCAGAATGAATACAACACAATCGTTGGTCAAAAA  400

seq1  TAAATTTGTATCTACAATATCGGATTTGAAATTAGTCATTAGCTGCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGTATCTACAATATCGGATTTGAAATTAGTCATTAGCTGCTTAT  450

seq1  TCGAGTGACTCAGCACATATTGTTCCAAGTTGAACTGTGTTGACTATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGACTCAGCACATATTGTTCCAAGTTGAACTGTGTTGACTATGTC  500

seq1  ATCGGCTCCATTTTACAGATGTTGGAACAAAGGCTAGAAAAAGGCAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCTCCATTTTACAGATGTTGGAACAAAGGCTAGAAAAAGGCAAATA  550

seq1  AGTTGCACAAAAGCAGACAGTTCTCCAGCAACTGACAGATTAGAACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCACAAAAGCAGACAGTTCTCCAGCAACTGACAGATTAGAACAAAC  600

seq1  ACAAGTTGACTAGTAAGTCTACCTGCTGTCAGGATGGCTGTCAGCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGACTAGTAAGTCTACCTGCTGTCAGGATGGCTGTCAGCTACAT  650

seq1  AGATGGATGCTGAACTATTGGAAAGTCAGTGGGGATTCAGAACACAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATGCTGAACTATTGGAAAGTCAGTGGGGATTCAGAACACAGAAC  700

seq1  AAAGAAAACAATTTCTCCTCCCAAGCAGTACAGTGTAGTCATGTCTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACAATTTCTCCTCCCAAGCAGTACAGTGTAGTCATGTCTGGAG  750

seq1  TGATGACACTACCCAATGTCCTCCTGTACCTTTAAGGGTAATTTTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACACTACCCAATGTCCTCCTGTACCTTTAAGGGTAATTTTCTCAG  800

seq1  TGGTGTCCCAGGGACTTAAAACAATCCATCAGACAACTTTCCCTTCCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTGTCCCAGGGACTTAAAACAATCCATCAGACAACTTTCCCTTTCTAA  850

seq1  AAGGATTTCACTATTGAAAAGGTTGTCATTTGTTTTTTGGCATTTCCTCT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGGATTTCACTATTGAAAA-GTTGTCATTTGTTTTTTGGCATTTCCTCT  899

seq1  TAAGGCTAAAAAAAGACAGGGTAAAGTTGCCAGAAAATGTGAATTGGAGA  950
      ||| ||| |||||||||| |||||||||||||||||||||||||| ||||
seq2  TAA-GCT-AAAAAAGACA-GGTAAAGTTGCCAGAAAATGTGAATT-GAGA  945

seq1  TAAAAGGCCCTGGGCTGGTCAGATGCTCAGGCCATGAGCTAGTACTAAGC  1000
      ||||  | ||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAA--GGCCTGGGCTGGTCAGATGCTCA-GCCATGAGCTAGTACTAAGC  992

seq1  TGAGGATTAGAATGCCAGGGACCTCATTTCCAAGCAAACACTCTCTGTGC  1050
      |||||| ||||||| ||||||| |||||||  ||||||||||||||||||
seq2  TGAGGA-TAGAATG-CAGGGACTTCATTTC--AGCAAACACTCTCTGTGC  1038

seq1  TAAGGCTCTGGCTATTTCCCCTCTGTCTTGGCTTACAAGCCCATCTCGCC  1100
      ||||||||||||||||| ||||||||||||   ||| || ||||| ||||
seq2  TAAGGCTCTGGCTATTT-CCCTCTGTCTTG--CTAC-AGGCCATCCCGCC  1084

seq1  CCATCTATGTAATCCCCATGTAGTAGGAAGTAGCTAGTCAAAGGCTCCTG  1150
      |  || ||||||| ||||||||  | ||||| ||||||| ||||||||||
seq2  CACTC-ATGTAAT-CCCATGTA--ATGAAGT-GCTAGTC-AAGGCTCCTG  1128

seq1  AGCAGATTTAAAATGTTCAGAAGCTCCAGAAGCCTGGAGTTCTTTTCATC  1200
      | | ||||| |||||||| ||   |||   | | |||| |||||||||| 
seq2  A-CCGATTT-AAATGTTC-GA--GTCC--GATCTTGGAATTCTTTTCAT-  1170

seq1  CTGCCT  1206
      ||||||
seq2  CTGCCT  1176

seq1: chr5_52159244_52160311
seq2: B6Ng01-085I11.g_68_1128 (reverse)

seq1  GGTCTTAGGCATTCATAAAACTTAATGTTCAAAAAAGCTTAGCATCCTAT  50
      |||| |||||| ||||||| |||||||||| ||||||| |||||||||||
seq2  GGTCCTAGGCA-TCATAAACCTTAATGTTC-AAAAAGC-TAGCATCCTAT  47

seq1  AGATC-ACGTGTATGTTCTCAATTCTGCGGGTGATAATGGATT-ATAGAG  98
      ||||| ||||||||| |||||| |||||||||||| ||||||| ||||||
seq2  AGATCAACGTGTATGATCTCAA-TCTGCGGGTGAT-ATGGATTAATAGAG  95

seq1  GATTTCTGACCATAGAAGTATGTCATCAAACTTATCCTTTAAGAAAGATT  148
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GA-TTCTGACCATAGAAGTATGTCATCAAACTTATCCTTT-AGAAAGATT  143

seq1  ATTGGGATGCCTCAGGTCCTTACTGTGGACTTGGCTAAGCCTGAAGTGAA  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTGGGATGCCTCAGGTCCTTACTGTGGACTTGGCTAAG-CTGAAGTGAA  192

seq1  AGAGCTTCAGG-AAGGATGAGATTATCAATTTTCTATTTTTGCATAAAGA  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTCAGGAAAGGATGAGATTATCAATTTTCTATTTTTGCATAAAGA  242

seq1  TGGAAGATAATGAAAACCTCCTTGGATTACTAGGATCCCAGTTATTATGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATAATGAAAACCTCCTTGGATTACTAGGATCCCAGTTATTATGA  292

seq1  CTTGGGGAAATGAGCTTTAACAGAACACACGAGGAAAGGAAAATGGTTGA  347
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  CTTGGGGAAATGAGCTTT-ACAG-ACACACGAGGAAAGGAAAATGGTTGA  340

seq1  GACAATTCTCCACTACAGAAGTTTTCTGGGAAGAAAGCAAGGTATGATAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCTCCACTACAGAAGTTTTCTGGGAAGAAAGCAAGGTATGATAA  390

seq1  TTATTTACAAAGAGAATTTGGGTATGATTACATCTCATTTGGGTGACAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAAAGAGAATTTGGGTATGATTACATCTCATTTGGGTGACAAT  440

seq1  TAAAATCAGCCTCTCCCTGTAATTCATTACTCTAGTTTTTCTAAAGGCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGCCTCTCCCTGTAATTCATTACTCTAGTTTTTCTAAAGGCAC  490

seq1  TGAGAAGCTCTGGTCTTTTCCTGGAGTCTTAGGAGTTGATATCAGAGAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCTCTGGTCTTTTCCTGGAGTCTTAGGAGTTGATATCAGAGAAG  540

seq1  ATAAAAACTAGGATATGAAGGAGCATAGGGCAGATAGACTCCAACCGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTAGGATATGAAGGAGCATAGGGCAGATAGACTCCAACCGTCT  590

seq1  TCCTTTGTTTACCAATAAGCTGAACTCTACTTCCTTTCCTTCTGCATGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTTTACCAATAAGCTGAACTCTACTTCCTTTCCTTCTGCATGGG  640

seq1  AGCTGTCTGTCAAATTTCATGAGGTGTGGCGAAAAAGAAGGAGTGGGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTGTCAAATTTCATGAGGTGTGGCGAAAAAGAAGGAGTGGGAAG  690

seq1  TTTCCTCCTATCATTAAGAAAAAACTATAATTCTTTGTTTAGCTCTGTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTATCATTAAGAAAAAACTATAATTCTTTGTTTAGCTCTGTAC  740

seq1  CCCATTTTTAATGGGGTTATTTGAATTGTGGGAGTTCAGCTTCTTGAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTAATGGGGTTATTTGAATTGTGGGAGTTCAGCTTCTTGAGCT  790

seq1  CTTTGCATATATTGGATATTAGTCCTATATCAGATTTAGGATTGGTAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATATATTGGATATTAGTCCTATATCAGATTTAGGATTGGTAAAA  840

seq1  ATTCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGGCATTATCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGGCATTATCTTT  890

seq1  TGCCCTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTTG  940

seq1  ATCTTGCAGCACAGGCCATCGCTGTTCTGTTTAGGAATTTTTCCCCTGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCAGCACAGGCCATCGCTGTTCTGTTTAGGAATTTTTCCCCTGTG  990

seq1  CCCATATCTTCGAGGGTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCTTCGAGGGTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGT  1040

seq1  CTCTGGTTTTATGTGGAATTC  1068
      |||||||||||||||||||||
seq2  CTCTGGTTTTATGTGGAATTC  1061