BAC Information

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BAC

Clone NameB6Ng01-085K22
Chromosome5 (Build37)
Map Location 136,232,192 - 136,374,535
singlet/doubletdoublet
Overlap geneStyxl1, Mdh2, 2900083I11Rik, Hspb1
Upstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik
Downstream geneYwhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085K22.bB6Ng01-085K22.g
ACCDH899291DH899292
length798416
definitionDH899291|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K22, 5' end.DH899292|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,232,192 - 136,232,963)(136,374,114 - 136,374,535)
sequence
gaatttctaggccagtgagagatcctgcccttttttaaataaatgtggct
agctcctgcagaatgacactggagatagtcatctggcctgcacagatagt
tgcatacatgcatgtgcacgcagagaacgtctgacataagacatcagcct
agaacttgccagtgaggggctggtggtgtggttggagcactctgctagaa
ccctctaatgaaggaatgtggcatggctcaccagaagggcacttggccag
tgagggagagacctgggtttaatctctagtactatggtggcaaaaccagc
cacaagccgcagcagtcagaaacatgtaaacaagcgacttctaacctaga
acagaagcctgtgcaaaactcctgctgcacagcataaggacctggcccac
aagacctagcacacacacacacacacacacacacacacacaagctgggtt
aatgggggcacacatctggaaacttagggctggagccacagagacaaatc
tccaaactttctggttaggcagattagccaatccatgagcaccaggtgca
gtgagagaccctttcttaaaaaaatcaagtgatgaatgacagaggaaaat
ggtcaatatttaacatatggccctccatcttgcacagatatctgcatgtg
tgtgtgacacacacacaatagtatcacctttcacttactagggtgtttgt
ctccatggaaaattttgacatgtgcttttaatttttcaagtccttgtgca
ttcttagcattgcaggcttggactgattttgccccaggtatacttctg
agagagcgagataaacaacagctcagaagatcgcaccccccccccccata
aagagaagaggtgggaccaggggaacctggaaaagagagggagggacggc
tgggcgtggtggtggcgcacgcctttaatcccagcacttgggaggcagag
gcaggcaaatttctgagttcgaggccaacctcgtctacagagtgagttcc
aggacagccagggctacacagagaaaccctgtcccaaaaaaaaaacaaag
agagagaaagagagagagagagatagagagagagactttgaggtacacat
tggctttaatcagcttgatttctatcttttgctatgactgaggtcataaa
tattgaactcagggtatgtaggcctggttggtgtggtgggctggcttctc
tagcaagctcctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136232192_136232963
seq2: B6Ng01-085K22.b_38_823

seq1  TTCTAGGCCAGTGAGAGATCCTG---TCTTTTAAATAAATGTGGCTAGCT  47
      |||||||||||||||||||||||   | ||||||||||||||||||||||
seq2  TTCTAGGCCAGTGAGAGATCCTGCCCTTTTTTAAATAAATGTGGCTAGCT  50

seq1  CCTGCAGAATGACACTGGAGATAGTCATCTGGCCTGCACAGATAGTTGCA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGAATGACACTGGAGATAGTCATCTGGCCTGCACAGATAGTTGCA  100

seq1  TACATGCATGTGCACGCAGAGAACGTCTGACATAAGACATCAGCCTAGAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATGTGCACGCAGAGAACGTCTGACATAAGACATCAGCCTAGAA  150

seq1  CTTGCCAGTGAGGGGCTGGTGGTGTGGTTGGAGCACTCTGCTAGAACCCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAGTGAGGGGCTGGTGGTGTGGTTGGAGCACTCTGCTAGAACCCT  200

seq1  CTAATGAAGGAATGTGGCATGGCTCACCAGAAGGGCACTTGGCCAGTGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAAGGAATGTGGCATGGCTCACCAGAAGGGCACTTGGCCAGTGAG  250

seq1  GGAGAGACCTGGGTTTAATCTCTAGTACTATGGTGGCAAAACCAGCCACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACCTGGGTTTAATCTCTAGTACTATGGTGGCAAAACCAGCCACA  300

seq1  AGCCGCAGCAGTCAGAAACATGTAAACAAGCGACTTCTAACCTAGAACAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCAGCAGTCAGAAACATGTAAACAAGCGACTTCTAACCTAGAACAG  350

seq1  AAGCCTGTGCAAAACTCCTGCTGCACAGCATAAGGACCTGGCCCACAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTGCAAAACTCCTGCTGCACAGCATAAGGACCTGGCCCACAAGA  400

seq1  CCTAGCACACACACACACACACACACACACACACACAAGCTGGGTTAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACACACACACACACACACACACACACACACAAGCTGGGTTAATG  450

seq1  GGGGCACACATCTGGAAACTTAGGGCTGGAGCCACAGAGACAAATCTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACACATCTGGAAACTTAGGGCTGGAGCCACAGAGACAAATCTCCA  500

seq1  AACTTTCTGGTTAGGCAGATTAGCCAATCCATGAGCACCAGGTGCAGTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTGGTTAGGCAGATTAGCCAATCCATGAGCACCAGGTGCAGTGA  550

seq1  GAGACCCTTTCTTAAAAAAATCAAGTGAAGAATGACAGAGGAAAATGGTC  597
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGACCCTTTCTTAAAAAAATCAAGTGATGAATGACAGAGGAAAATGGTC  600

seq1  AATA-TTAACATATGG-CCTCCATC-TGCACAGATATCTGCATGTGTGTG  644
      |||| ||||||||||| |||||||| ||||||||||||||||||||||||
seq2  AATATTTAACATATGGCCCTCCATCTTGCACAGATATCTGCATGTGTGTG  650

seq1  TGACACACACACAATAGTATCACC-TTCACTTACTAGGGTG-TTGTCTCC  692
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TGACACACACACAATAGTATCACCTTTCACTTACTAGGGTGTTTGTCTCC  700

seq1  ATGG-AAATATTGACATGTGCTTT--AATTTTCAAGTCCTTGTGCA-TCT  738
      |||| |||| ||||||||||||||  | |||||||||||||||||| |||
seq2  ATGGAAAATTTTGACATGTGCTTTTAATTTTTCAAGTCCTTGTGCATTCT  750

seq1  TAGCATTGCAGGCTT-GACTGATTTTG-CCCAGGTA  772
      ||||||||||||||| ||||||||||| ||||||||
seq2  TAGCATTGCAGGCTTGGACTGATTTTGCCCCAGGTA  786

seq1: chr5_136374114_136374535
seq2: B6Ng01-085K22.g_69_490 (reverse)

seq1  TTTTAGGAGCTTGCTAGAGGAGCCAGCCCCCCACCCCAACCAGGCCTACC  50
      ||||||||||||||||||| ||||||||| |||| |||||||||||||| 
seq2  TTTTAGGAGCTTGCTAGAGAAGCCAGCCCACCACACCAACCAGGCCTACA  50

seq1  TACCCTGAGTTCAATTTTTCTGACCTCTGTCCTTGCAAAAGATAGAAATC  100
      ||||||||||||||| ||| ||||||| ||| | ||||||||||||||||
seq2  TACCCTGAGTTCAATATTTATGACCTCAGTCATAGCAAAAGATAGAAATC  100

seq1  AAGCTGATTAGAGCCTATGTGTACCTCTAAGTCTCTCTCTCTCTCTCTCT  150
      |||||||||| |||| ||||||||||| |||||||||||||| |||||||
seq2  AAGCTGATTAAAGCCAATGTGTACCTCAAAGTCTCTCTCTCTATCTCTCT  150

seq1  CTCTCTCTTTCTCTCTCTTTGTTTTTTTTTTGGGACAGGGTTTCTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTTCTCTCTCTTTGTTTTTTTTTTGGGACAGGGTTTCTCTGTG  200

seq1  TAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACGAGGTTGGCCTCGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACGAGGTTGGCCTCGAAC  250

seq1  TCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGC  300

seq1  GCCACCACCACGCCCAGCCGTCCCTCCCTCTCTTTTCCAGGTTCCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCACGCCCAGCCGTCCCTCCCTCTCTTTTCCAGGTTCCCCTGG  350

seq1  TCCCACCTCTTCTCTTTATGGGGGGGGGGGGTGCGATCTTCTGAGCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTCTTCTCTTTATGGGGGGGGGGGGTGCGATCTTCTGAGCTGTT  400

seq1  GTTTATCTCGCTCTCTGAATTC  422
      ||||||||||||||||||||||
seq2  GTTTATCTCGCTCTCTGAATTC  422