BAC Information

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BAC

Clone NameB6Ng01-085N12
Chromosome1 (Build37)5 (Build37)
Map Location 40,184,399 - 40,184,67157,337,066 - 57,338,146
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085N12.bB6Ng01-085N12.g
ACCDH899402DH899403
length2631,065
definitionDH899402|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N12, 5' end.DH899403|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,184,399 - 40,184,671)(57,337,066 - 57,338,146)
sequence
ctagatatcctaataaaagagtacacatggaggaacccatggctccagct
gtatatgtagcagaggatggtcttgatggacatcaatggaagcagaggcc
cttgaaggctctatgccttaatgtaggaaatgtcagaatagagaagttgc
agtgggtattgttgagcagggggaggggatggtatagagagtttatgaag
gaaaaagcagaaagggaataacatttgagatgtaaataaagaaaagagag
agagagagagaga
gaattcttttgcaatgttaaaagaaactgtgtgtgttgctatctcctaag
gatcaaagggctgggatcacatgatactgattctttgataatctaaagga
aaccaggagtaaaagactggattaatatgtagaataaaagactggatgtg
tgagccattcggatttctttttaggattaaaagagaactgtttggagaaa
tgaccaacctagagacacacagagacacaaagacaaacagacagagacac
actcacaagcaagcaggacagagagatttcttggagtagtgagcaagcag
aatatagacaaggaaatctccagagagaatgcagaacataaagagaagca
gatagaaaagctatatttagcagaacacagatcatcattagcttgcatcc
acgattggatgagtccttccttttgctgcttccacacagcgctcttctca
gaactcctctccatgccaagacagaatagaaaaaagacagacacaccacc
aagtgaacaaaagttcgagtcaggtaggttggtcacactctgaagaatgc
ctgcatctacagcagctaagcatctatagcatgggggtgaggagttatcc
agtttcaggcattgttctctgtttacaaattagtcagattctcttggctt
ccctacattatttgaaaaatattttaatttactattttacaaactaattg
gatgccagtgatttgtttagagctgtttagatatcaaattcataatgccc
tatatagagatgtacaaaggaaagccaaagaatgggatgtagattccata
gtggcatccagacaagcctgcatcacccatcaaaatgttgacaatgaact
actactacgaagtataatagcattgtcttgacttaatctgccacatacat
cctttggcatatacccaactttatagaagttttataatgtaactaaaaat
ccttaaacatagcagataacacacacacacagattatatatatatgtttg
atacactgtgtctgtctagtgtgtgtagtgtgaaagacctagtcacgaca
ctcttataaagtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40184399_40184671
seq2: B6Ng01-085N12.b_68_315 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTTTCTTTCTTAAATTAGATATTTTCTTTATTT  50
      ||||||||||||||||||                    ||||||||||||
seq2  TCTCTCTCTCTCTCTCTC--------------------TTTTCTTTATTT  30

seq1  ACATTTCAAATGTTATCCCCTTTACTCATTTCCCCTCTGAAAACCCCT-T  99
      |||| ||||||||||| ||||||   | ||| || ||  |||  | || |
seq2  ACATCTCAAATGTTATTCCCTTTCTGCTTTTTCCTTCATAAACTCTCTAT  80

seq1  ATC--CCCCTCCCCC----CACCAATCCACCCACTCCCCACTTCCCTGTC  143
      | |  ||||||||||    || ||||  |||||||  | ||||| || | 
seq2  ACCATCCCCTCCCCCTGCTCAACAAT--ACCCACT-GCAACTTCTCTATT  127

seq1  CTGGCATTCCCCTACACTGGGGCATTGAGCCTTCATAGGACCAAGGGCCT  193
      ||| ||||  |||||| |  ||||| |||||||        |||||||||
seq2  CTGACATT-TCCTACATTAAGGCATAGAGCCTT--------CAAGGGCCT  168

seq1  CTCCTCCCATTGATGTCCCACAAGGCCATCCTCTACTACATATGTGGCTG  243
      || || ||||||||||||  |||| ||||||||| ||||||||   ||||
seq2  CTGCTTCCATTGATGTCCATCAAGACCATCCTCTGCTACATATACAGCTG  218

seq1  GAGCCATGGGTCCCTCCATGTGTACTCTTT  273
      ||||||||||| ||||||||||||||||||
seq2  GAGCCATGGGTTCCTCCATGTGTACTCTTT  248

seq1: chr5_57337066_57338146
seq2: B6Ng01-085N12.g_69_1133 (reverse)

seq1  GTTACCTTTTATAAGAGTTGTCGTGGACTTAGTGTCTTTTCACACTACAA  50
      |||||  |||||||||| |||||| ||| ||| ||| ||||||||||| |
seq2  GTTAC--TTTATAAGAG-TGTCGT-GAC-TAG-GTC-TTTCACACTAC-A  42

seq1  CACCAACTAAGACAAGACACAAGTGTATCAAACATTATATATATAATCTG  100
      |||  ||| |||| |||||| ||||||||||||| |||||||||||||||
seq2  CAC--ACT-AGAC-AGACAC-AGTGTATCAAACA-TATATATATAATCTG  86

seq1  TGTGTGTGTGTTTATCTGCTATGTTTAAGGATTTTTAGTTACATTATAAA  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTG-TTATCTGCTATGTTTAAGGATTTTTAGTTACATTATAAA  135

seq1  ACTTCTATAAAGTTGGGTATATGCCAAAAGGATGTATGTGGCAGATTAAG  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTTCTATAAAGTTGGGTATATGCC-AAAGGATGTATGTGGCAGATTAAG  184

seq1  TCAAGACAATGCTATTATACTTCGTAGTAGTAGTTCATTGTCAACATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAATGCTATTATACTTCGTAGTAGTAGTTCATTGTCAACATTTT  234

seq1  GATGGGTGATGCAGGCTTGTCTGGATGCCACTATGGAATCTACATCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTGATGCAGGCTTGTCTGGATGCCACTATGGAATCTACATCCCAT  284

seq1  TCTTTGGCTTTCCTTTGTACATCTCTATATAGGGCATTATGAATTTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCTTTCCTTTGTACATCTCTATATAGGGCATTATGAATTTGATA  334

seq1  TCTAAACAGCTCTAAACAAATCACTGGCATCCAATTAGTTTGTAAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAGCTCTAAACAAATCACTGGCATCCAATTAGTTTGTAAAATAG  384

seq1  TAAATTAAAATATTTTTCAAATAATGTAGGGAAGCCAAGAGAATCTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAATATTTTTCAAATAATGTAGGGAAGCCAAGAGAATCTGACT  434

seq1  AATTTGTAAACAGAGAACAATGCCTGAAACTGGATAACTCCTCACCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAAACAGAGAACAATGCCTGAAACTGGATAACTCCTCACCCCCA  484

seq1  TGCTATAGATGCTTAGCTGCTGTAGATGCAGGCATTCTTCAGAGTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAGATGCTTAGCTGCTGTAGATGCAGGCATTCTTCAGAGTGTGAC  534

seq1  CAACCTACCTGACTCGAACTTTTGTTCACTTGGTGGTGTGTCTGTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACCTGACTCGAACTTTTGTTCACTTGGTGGTGTGTCTGTCTTTT  584

seq1  TTCTATTCTGTCTTGGCATGGAGAGGAGTTCTGAGAAGAGCGCTGTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCTGTCTTGGCATGGAGAGGAGTTCTGAGAAGAGCGCTGTGTGG  634

seq1  AAGCAGCAAAAGGAAGGACTCATCCAATCGTGGATGCAAGCTAATGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAAAAGGAAGGACTCATCCAATCGTGGATGCAAGCTAATGATGA  684

seq1  TCTGTGTTCTGCTAAATATAGCTTTTCTATCTGCTTCTCTTTATGTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTCTGCTAAATATAGCTTTTCTATCTGCTTCTCTTTATGTTCTG  734

seq1  CATTCTCTCTGGAGATTTCCTTGTCTATATTCTGCTTGCTCACTACTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTCTGGAGATTTCCTTGTCTATATTCTGCTTGCTCACTACTCCA  784

seq1  AGAAATCTCTCTGTCCTGCTTGCTTGTGAGTGTGTCTCTGTCTGTTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTCTCTGTCCTGCTTGCTTGTGAGTGTGTCTCTGTCTGTTTGTC  834

seq1  TTTGTGTCTCTGTGTGTCTCTAGGTTGGTCATTTCTCCAAACAGTTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCTCTGTGTGTCTCTAGGTTGGTCATTTCTCCAAACAGTTCTCT  884

seq1  TTTAATCCTAAAAAGAAATCCGAATGGCTCACACATCCAGTCTTTTATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCTAAAAAGAAATCCGAATGGCTCACACATCCAGTCTTTTATTC  934

seq1  TACATATTAATCCAGTCTTTTACTCCTGGTTTCCTTTAGATTATCAAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTAATCCAGTCTTTTACTCCTGGTTTCCTTTAGATTATCAAAGA  984

seq1  ATCAGTATCATGTGATCCCAGCCCTTTGATCCTTAGGAGATAGCAACACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATCATGTGATCCCAGCCCTTTGATCCTTAGGAGATAGCAACACA  1034

seq1  CACAGTTTCTTTTAACATTGCAAAAGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  CACAGTTTCTTTTAACATTGCAAAAGAATTC  1065