BAC Information

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BAC

Clone NameB6Ng01-085O11
Chromosome5 (Build37)
Map Location 27,321,031 - 27,487,991
singlet/doubletdoublet
Overlap geneDpp6, B930011P16Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085O11.bB6Ng01-085O11.g
ACCDH899448DH899449
length1,020805
definitionDH899448|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O11, 5' end.DH899449|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,486,967 - 27,487,991)(27,321,031 - 27,321,839)
sequence
gaattccttccttggtgtatctgagactaaaaagtaatttgcacagggtt
ctgccatccggcggggagagccaaaaggtgagactccagaagctgcctgt
ggtgagaagctcggtgccaatggcacagaagaatgggggttactacagtg
tgagtgagcacatccctcactggagcgcttggcaaccaacccctgccgcg
ctcagctctgggagagcaacccaaaacttcagcttcctcagcttccctcc
ttctggtcaatcagggcgtctgaagaagcagaccgccagaaggaggcctg
tgcactttatctgcaggaccctctctgagccctcacccactacacacagg
tctgctccagagactgtgatcaggtcgtggcatctggttccccagtgacc
aggtaacgctgtggctaaaggctaacctgtcatttccagaaaacttctgc
tctgagtaaatatcaaagctaagctggctgctgactgcatctgctacaga
ttagttaaaattaaatcccaaacctttggcaaggcatcaaacatagccag
gaaaatctccagcgggagccttgtaagataatgaactcttaggctacctc
tcacccaacggttaactgctttccgtttctccccctttcaaaattaaaca
tttatttttcaataaattgatttgtgtctgtctactcaccctccaaaatt
gttttatcctgttcatccgggacagcttggaggcattcatccctgtgagc
tgatctcagtgaggcacaccactacagctgccaccaagtctactgtgcaa
gcagagatgcccagagctctctcagcaggacactccctggcttttaagct
gcttaccaacaaccacagagtttgctgtgagcacaaacagccaatagctt
aacaggatagtagcctctggggactacaggcagtagagctgccctagcat
gctgagcttttgacccaggaaggatctttccccataggaggaatggggtt
tttctggattgtctggccat
gaattcctaatttgattgacagcagattctccctacaggagtttgcctca
tctatgtgtctacatactctccagcttgggttgaacatctcagccctccc
ctgtgagaagcactggctgtcatgtaagtcctgtgaccccagggactaag
atgcatagccttgcgacatgcacggactctctccaatgagaccaatgttg
tagctgtgagggaaaggatggaactagcctgggcagacttactgggtttg
tattcatctgaagtctcagaatccattcccagggctcatctgcctacact
tgcaggcagcacaggaccccggacccatgaaattgttgtttactctatga
aatattgcctccacagtctatccacctacccagtactccttatccccact
ggacccacaggctcagcttggtcttgagggctcagtggttgtgtttgtta
tgcatcagtaccatctactgtaaaagtctggactgtcttagagcacatgc
cctgagtgctcagtgcacttactgtgacagcatgtgtgagtactcactgt
acctattgtgacaacttgtctgagtgctcgctacacctgtgtgacagcat
attaggtacttttgctgtcctaaaatatatactgacaaatcagcttaaag
ggaaaaaggattttttgtttggttttttagttcatagttcaagtgtacag
tccatcatggcagtgcagcatggcagcagtagcctgaggcagggttgtca
catttcacatccatagtcaagaaggagagagggagagggagaggggagag
ggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27486967_27487991
seq2: B6Ng01-085O11.b_44_1063 (reverse)

seq1  ATGGCCAGACAATTCAGAAAAACCCCATTCTCCCTATGGGGGAAAGATCC  50
      ||||||||||||| ||||||||||||||||  ||||| ||||||||||||
seq2  ATGGCCAGACAATCCAGAAAAACCCCATTCCTCCTAT-GGGGAAAGATCC  49

seq1  TTCCTGGGTCAGAGGCTCAGCCTGCTTGGGGCAGCTCTACTGCCTGTAGT  100
      ||||||||||| | ||||||| ||| | ||||||||||||||||||||||
seq2  TTCCTGGGTCAAAAGCTCAGCATGC-TAGGGCAGCTCTACTGCCTGTAGT  98

seq1  CCCCAGAGGCTAACTATCCTGTTCAGCTATTGGCTGTTTGTGCTCACAGC  150
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  CCCCAGAGGCT-ACTATCCTGTTAAGCTATTGGCTGTTTGTGCTCACAGC  147

seq1  AAACTCTGTGGTTGTTGGTAAGCAGCCTTAAAAGCCAGGGAGTGTCCCTG  200
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  AAACTCTGTGGTTGTTGGTAAGCAG-CTTAAAAGCCAGGGAGTGT-CCTG  195

seq1  CTGAGAGAGCTCTGGGCATCTCTGCTTGCACAGTAGACTTGGTGGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGCTCTGGGCATCTCTGCTTGCACAGTAGACTTGGTGGCAGCT  245

seq1  GTAGTGGTGTGCCTCACCTGAGATCAGCTCACAGGGATGAATGCCTCCAA  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTAGTGGTGTGCCTCA-CTGAGATCAGCTCACAGGGATGAATGCCTCCAA  294

seq1  GCTGTCCCGGATGAACAGGATAAAACAATTTTGGAGGGTGAGTAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCGGATGAACAGGATAAAACAATTTTGGAGGGTGAGTAGACAGA  344

seq1  CACAAATCAATTTATTGAAAAATAAATGTTTAATTTTG-AAGGGGGAGAA  399
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACAAATCAATTTATTGAAAAATAAATGTTTAATTTTGAAAGGGGGAGAA  394

seq1  ACGGAAAGCAGTTAACCGTTGGGTGAGAGGTAGCCTAAGAGTTCATTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAAGCAGTTAACCGTTGGGTGAGAGGTAGCCTAAGAGTTCATTATC  444

seq1  TTACAAGGCTCCCGCTGGAGATTTTCCTGGCTATGTTTGATGCCTTGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGCTCCCGCTGGAGATTTTCCTGGCTATGTTTGATGCCTTGCCA  494

seq1  AAGGTTTGGGATTTAATTTTAACTAATCTGTAGCAGATGCAGTCAGCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTGGGATTTAATTTTAACTAATCTGTAGCAGATGCAGTCAGCAGC  544

seq1  CAGCTTAGCTTTGATATTTACTCAGAGCAGAAGTTTTCTGGAAATGACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGCTTTGATATTTACTCAGAGCAGAAGTTTTCTGGAAATGACAG  594

seq1  GTTAGCCTTTAGCCACAGCGTTACCTGGTCACTGGGGAACCAGATGCCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCTTTAGCCACAGCGTTACCTGGTCACTGGGGAACCAGATGCCAC  644

seq1  GACCTGATCACAGTCTCTGGAGCAGACCTGTGTGTAGTGGGTGAGGGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGATCACAGTCTCTGGAGCAGACCTGTGTGTAGTGGGTGAGGGCTC  694

seq1  AGAGAGGGTCCTGCAGATAAAGTGCACAGGCCTCCTTCTGGCGGTCTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGTCCTGCAGATAAAGTGCACAGGCCTCCTTCTGGCGGTCTGCT  744

seq1  TCTTCAGACGCCCTGATTGACCAGAAGGAGGGAAGCTGAGGAAGCTGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACGCCCTGATTGACCAGAAGGAGGGAAGCTGAGGAAGCTGAAG  794

seq1  TTTTGGGTTGCTCTCCCAGAGCTGAGCGCGGCAGGGGTTGGTTGCCAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTGCTCTCCCAGAGCTGAGCGCGGCAGGGGTTGGTTGCCAAGC  844

seq1  GCTCCAGTGAGGGATGTGCTCACTCACACTGTAGTAACCCCCATTCTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTGAGGGATGTGCTCACTCACACTGTAGTAACCCCCATTCTTCT  894

seq1  GTGCCATTGGCACCGAGCTTCTCACCACAGGCAGCTTCTGGAGTCTCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTGGCACCGAGCTTCTCACCACAGGCAGCTTCTGGAGTCTCACC  944

seq1  TTTTGGCTCTCCCCGCCGGATGGCAGAACCCTGTGCAAATTACTTCTTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTGGCTCTCCCCGCCGGATGGCAGAACCCTGTGCAAATTACTTTTTAG  994

seq1  TCTCAGATACACCAAGGAAGGAATTC  1025
      ||||||||||||||||||||||||||
seq2  TCTCAGATACACCAAGGAAGGAATTC  1020

seq1: chr5_27321031_27321839
seq2: B6Ng01-085O11.g_68_872

seq1  GAATTCCTAATTTGATTGACAGCAGATTCTCCCTACAGGAGTTTGCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATTTGATTGACAGCAGATTCTCCCTACAGGAGTTTGCCTCA  50

seq1  TCTATGTGTCTACATACTCTCCAGCTTGGGTTGAACATCTCAGCCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGTCTACATACTCTCCAGCTTGGGTTGAACATCTCAGCCCTCCC  100

seq1  CTGTGAGAAGCACTGGCTGTCATGTAAGTCCTGTGACCCCAGGGACTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAAGCACTGGCTGTCATGTAAGTCCTGTGACCCCAGGGACTAAG  150

seq1  ATGCATAGCCTTGCGACATGCACGGACTCTCTCCAATGAGACCAATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGCCTTGCGACATGCACGGACTCTCTCCAATGAGACCAATGTTG  200

seq1  TAGCTGTGAGGGAAAGGATGGAACTAGCCTGGGCAGACTTACTGGGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGAGGGAAAGGATGGAACTAGCCTGGGCAGACTTACTGGGTTTG  250

seq1  TATTCATCTGAAGTCTCAGAATCCATTCCCAGGGCTCATCTGCCTACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCTGAAGTCTCAGAATCCATTCCCAGGGCTCATCTGCCTACACT  300

seq1  TGCAGGCAGCACAGGACCCCGGACCCATGAAATTGTTGTTTACTCTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAGCACAGGACCCCGGACCCATGAAATTGTTGTTTACTCTATGA  350

seq1  AATATTGCCTCCACAGTCTATCCACCTACCCAGTACTCCTTATCCCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCCTCCACAGTCTATCCACCTACCCAGTACTCCTTATCCCCACT  400

seq1  GGACCCACAGGCTCAGCTTGGTCTTGAGGGCTCAGTGGTTGTGTTTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACAGGCTCAGCTTGGTCTTGAGGGCTCAGTGGTTGTGTTTGTTA  450

seq1  TGCATCAGTACCATCTACTGTAAAAGTCTGGACTGTCTTAGAGCACATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGTACCATCTACTGTAAAAGTCTGGACTGTCTTAGAGCACATGC  500

seq1  CCTGAGTGCTCAGTGCACTTACTGTGACAGCATGTGTGAGTACTCACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGCTCAGTGCACTTACTGTGACAGCATGTGTGAGTACTCACTGT  550

seq1  ACCTATTGTGACAACTTGTCTGAGTGCTCGCTACACCTGTGTGACAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGTGACAACTTGTCTGAGTGCTCGCTACACCTGTGTGACAGCAT  600

seq1  ATTAGGTACTTTTGCTGTCCTAAAATATATACTGACAAATCAGCTT-AAG  649
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTAGGTACTTTTGCTGTCCTAAAATATATACTGACAAATCAGCTTAAAG  650

seq1  GGAAAAAGGATTTTTTGTTTGGTTTTTTAGTTCATAGTTCAAGTGTACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGGATTTTTTGTTTGGTTTTTTAGTTCATAGTTCAAGTGTACAG  700

seq1  TCCATCATGGCAGTGCAGGCATGGCAGCAGTAGCCTGAGGCAGGG-TGTC  748
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  TCCATCATGGCAGTGCA-GCATGGCAGCAGTAGCCTGAGGCAGGGTTGTC  749

seq1  ACATTTCACATCCATAGTCAGGAAGGAGAGAGGGAGAGGGAGAGGGAGAG  798
      |||||||||||||||||||| |||||||||||||||||||||||     |
seq2  ACATTTCACATCCATAGTCAAGAAGGAGAGAGGGAGAGGGAGAG-----G  794

seq1  GGAGAGGGAGA  809
      |||||||||||
seq2  GGAGAGGGAGA  805