BAC Information

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BAC

Clone NameB6Ng01-085O12
Chromosome5 (Build37)
Map Location 18,605,183 - 18,763,018
singlet/doubletdoublet
Overlap gene4921504A21Rik, Magi2
Upstream geneGnai1, LOC100041818, LOC668167
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085O12.bB6Ng01-085O12.g
ACCDH899450DH899451
length1,1111,105
definitionDH899450|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O12, 5' end.DH899451|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,761,908 - 18,763,018)(18,605,183 - 18,606,294)
sequence
gaattccaatacatgttcactcttacaatcgacactgttatttcttcctg
aacttacaagacaatagaactgatatgagtgattttcatctgcattctga
aatgacatgcttccatttcatctaatatggaatattttacctctagtaat
acctgctattaatgattttggatgtttgtttttattatttgtattttagg
aaccagaagaaaagttacagacagatgtacaaatgaacagatatacaaaa
agactggtgtacataaagtcatataaaaataaagttcaaaagaataactt
ttattggttgatttcattatatgacaatttcatacttgtttataattttt
aaggataaaatcatttaggttacttgtcaagtggagtgagatgatgcagc
acagaaacttttctctcttgcttttaaagtacatgcgatgcagaattaaa
gtcctgcaaagcaccgcccatagaatctgaccacagcagtgcagttctcc
ctgacatagtcagtcctaatctgaagaagatatgaaatgttttaaaggaa
gttcagaccactattctgaaagccatatatttaaaaacacttacagcaca
gattaaaacagcttttatggctacatagttagggaacgaagacaaaacaa
agatacattttcatttctaattatttggcatatgcctttatacatcccca
gtctgttggttgctaatttctgccttttatacccggtgcaaatactcctt
tatttctttctatttgaatccctgtgctttctctaaaattcaaataaatg
ggaatattttactgctgtatggtctggccccatttatccccatttcaatt
gactaggcagctgtggggaaattcagtaggaagagaatgatgtcaaagta
aacaaaacaagctggaggaactcatcccactgtagaaacaactggatatt
ctgaaatagcaggataatgataatattagctagtgatgacatacaaatga
gtgtttcatgacaacataggcaatagtataagaaatacttaaaactacat
tcaatttctgccttattgtctgccacctcaactgtcctagcctataatgg
agttgtgtttg
gaattcagttgagttagtgcagtcagtgccatccgtccagtttgtgcagt
ttagttcatggaacagagcagcagattttttccaagcagagcaattaggt
tagaagtcaagtgaaaccagtttgaatgagtcaacttggagcagaatttt
gagccagaacagctgaattaaaccagcctgtcagagttcagaaagaacta
aagtggggaagcttacaaaggagtaagcctccaagatgataatgaaatct
ggtgaactaagttacattgacatgcaggaattgattatcttcttctatgt
gtgatcagaaatagaacttgggtcgtaagattggttcagacaccatttgc
ttgctgaatcatctccatggattttaccatactaacttaagtaccacttt
aataaggagaattgaatagttttgccactaaaatattatagataaaatta
ataagatttcatgacaaaacttggaaaatagtagtttattttccattatt
catcttgaaataatcattgttacctctatttttatcactattcatcaatg
cttaatcaataatttgaaaattttccattcttatattaacccccaagaaa
catttatttcatgttgccaatgtatatccagaagatgtcccaaccggtaa
gaaggacacatgctccactatgtttcatagcagccttgtttataatagcc
aggaagctggaaagaacccagatgcccctcaacagaggaatggatacaga
aatgtggtacatttccacaatggaatactactcagctattaaaaaaataa
atttatgaaattcctaggcaatggatggacctagggggtatcatcttgag
tgaggtaacccaatcacaaggaactcacacaatatgtactcactgataag
tggatattagcccagaaacttagatacccaagatataagatacacttgcc
aacgcatgaaattcagaagacgagaccaaagtgttgacactttacccttt
cttagaatgggaacaaaacacccatggaaggagttacgagacaaaatttg
gagctgtgaagaaggatggaccattctagtgatggcatatgcaggatcta
tccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18761908_18763018
seq2: B6Ng01-085O12.b_48_1158 (reverse)

seq1  CAAACACAACT-CATTATTAGGCTAAGACAGTTTGAGTGGCAGAC-ATAA  48
      ||||||||||| ||||| ||||||| |||||||   ||||||||| ||||
seq2  CAAACACAACTCCATTA-TAGGCTAGGACAGTTGAGGTGGCAGACAATAA  49

seq1  GGCAGAAATTGAATGTAGTTTTAAGTATTTC-TATACTATTGCCTATGTT  97
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCAGAAATTGAATGTAGTTTTAAGTATTTCTTATACTATTGCCTATGTT  99

seq1  GTCATGAAACACTCATTTGTATGTCATCACTAGCTAATATTATCATTATC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAAACACTCATTTGTATGTCATCACTAGCTAATATTATCATTATC  149

seq1  CTGCTATTTCAGAATTATCCAGTTGTTTTCTACAGTGGGATGAGTTCCTC  197
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  CTGCTATTTCAGAA-TATCCAGTTG-TTTCTACAGTGGGATGAGTTCCTC  197

seq1  CAGCTTGTTTTGTTTACTTTGACATCATTCTCTTCCTACTGAATTTCCCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTTTTGTTTACTTTGACATCATTCTCTTCCTACTGAATTTCCCC  247

seq1  ACAGCTGCCTAGTCAATTGAAATGGGGATAAATGGGGCCAGACCATACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCCTAGTCAATTGAAATGGGGATAAATGGGGCCAGACCATACAG  297

seq1  CAGTAAAATATTCCCATTTATTTGAATTTTAGAGAAAGCACAGGGATTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAATATTCCCATTTATTTGAATTTTAGAGAAAGCACAGGGATTCA  347

seq1  AATAGAAAGAAATAAAGGAGTATTTGCACCGGGTATAAAAGGCAGAAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGAAATAAAGGAGTATTTGCACCGGGTATAAAAGGCAGAAATT  397

seq1  AGCAACCAACAGACTGGGGATGTATAAAGGCATATGCCAAATAATTAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCAACAGACTGGGGATGTATAAAGGCATATGCCAAATAATTAGAA  447

seq1  ATGAAAATGTATCTTTGTTTTGTCTTCGTTCCCTAACTATGTAGCCATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGTATCTTTGTTTTGTCTTCGTTCCCTAACTATGTAGCCATAA  497

seq1  AAGCTGTTTTAATCTGTGCTGTAAGTGTTTTTAAATATATGGCTTTCAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTTAATCTGTGCTGTAAGTGTTTTTAAATATATGGCTTTCAGA  547

seq1  ATAGTGGTCTGAACTTCCTTTAAAACATTTCATATCTTCTTCAGATTAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGTCTGAACTTCCTTTAAAACATTTCATATCTTCTTCAGATTAGG  597

seq1  ACTGACTATGTCAGGGAGAACTGCACTGCTGTGGTCAGATTCTATGGGCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTATGTCAGGGAGAACTGCACTGCTGTGGTCAGATTCTATGGGCG  647

seq1  GTGCTTTGCAGGACTTTAATTCTGCATCGCATGTACTTTAAAAGCAAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGCAGGACTTTAATTCTGCATCGCATGTACTTTAAAAGCAAGAG  697

seq1  AGAAAAGTTTCTGTGCTGCATCATCTCACTCCACTTGACAAGTAACCTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTTCTGTGCTGCATCATCTCACTCCACTTGACAAGTAACCTAA  747

seq1  ATGATTTTATCCTTAAAAATTATAAACAAGTATGAAATTGTCATATAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTATCCTTAAAAATTATAAACAAGTATGAAATTGTCATATAATG  797

seq1  AAATCAACCAATAAAAGTTATTCTTTTGAACTTTATTTTTATATGACTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACCAATAAAAGTTATTCTTTTGAACTTTATTTTTATATGACTTT  847

seq1  ATGTACACCAGTCTTTTTGTATATCTGTTCATTTGTACATCTGTCTGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACCAGTCTTTTTGTATATCTGTTCATTTGTACATCTGTCTGTAA  897

seq1  CTTTTCTTCTGGTTCCTAAAATACAAATAATAAAAACAAACATCCAAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCTGGTTCCTAAAATACAAATAATAAAAACAAACATCCAAAAT  947

seq1  CATTAATAGCAGGTATTACTAGAGGTAAAATATTCCATATTAGATGAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAGCAGGTATTACTAGAGGTAAAATATTCCATATTAGATGAAAT  997

seq1  GGAAGCATGTCATTTCAGAATGCAGATGAAAATCACTCATATCAGTTCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATGTCATTTCAGAATGCAGATGAAAATCACTCATATCAGTTCTA  1047

seq1  TTGTCTTGTAAGTTCAGGAAGAAATAACAGTGTCGATTGTAAGAGTGAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGTAAGTTCAGGAAGAAATAACAGTGTCGATTGTAAGAGTGAAC  1097

seq1  ATGTATTGGAATTC  1111
      ||||||||||||||
seq2  ATGTATTGGAATTC  1111

seq1: chr5_18605183_18606294
seq2: B6Ng01-085O12.g_72_1176

seq1  GAATTCAGTTGAGTTAGTGCAGTCAGTGCCATCCGTCCAGTTTGTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGAGTTAGTGCAGTCAGTGCCATCCGTCCAGTTTGTGCAGT  50

seq1  TTAGTTCATGGAACAGAGCAGCAGATTTTTTCCAAGCAGAGCAATTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCATGGAACAGAGCAGCAGATTTTTTCCAAGCAGAGCAATTAGGT  100

seq1  TAGAAGTCAAGTGAAACCAGTTTGAATGAGTCAACTTGGAGCAGAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCAAGTGAAACCAGTTTGAATGAGTCAACTTGGAGCAGAATTTT  150

seq1  GAGCCAGAACAGCTGAATTAAACCAGCCTGTCAGAGTTCAGAAAGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAACAGCTGAATTAAACCAGCCTGTCAGAGTTCAGAAAGAACTA  200

seq1  AAGTGGGGAAGCTTACAAAGGAGTAAGCCTCCAAGATGATAATGAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGAAGCTTACAAAGGAGTAAGCCTCCAAGATGATAATGAAATCT  250

seq1  GGTGAACTAAGTTACATTGACATGCAGGAATTGATTATCTTCTTCTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACTAAGTTACATTGACATGCAGGAATTGATTATCTTCTTCTATGT  300

seq1  GTGATCAGAAATAGAACTTGGGTCGTAAGATTGGTTCAGACACCATTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGAAATAGAACTTGGGTCGTAAGATTGGTTCAGACACCATTTGC  350

seq1  TTGCTGAATCATCTCCATGGATTTTACCATACTAACTTAAGTACCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAATCATCTCCATGGATTTTACCATACTAACTTAAGTACCACTTT  400

seq1  AATAAGGAGAATTGAATAGTTTTGCCACTAAAATATTATAGATAAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGAGAATTGAATAGTTTTGCCACTAAAATATTATAGATAAAATTA  450

seq1  ATAAGATTTCATGACAAAACTTGGAAAATAGTAGTTTATTTTCCATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTTCATGACAAAACTTGGAAAATAGTAGTTTATTTTCCATTATT  500

seq1  CATCTTGAAATAATCATTGTTACCTCTATTTTTATCACTATTCATCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGAAATAATCATTGTTACCTCTATTTTTATCACTATTCATCAATG  550

seq1  CTTAATCAATAATTTGAAAA-TTTCCATTCTTATATTAACCCCCAAGAAA  599
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTAATCAATAATTTGAAAATTTTCCATTCTTATATTAACCCCCAAGAAA  600

seq1  CATTTATTTCATGTTGCCAATGTATATCCAGAAGATGTCCCAACCGGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTCATGTTGCCAATGTATATCCAGAAGATGTCCCAACCGGTAA  650

seq1  GAAGGACACATGCTCCACTATG-TTCATAGCAGCCTTGTTTATAATAGCC  698
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAGGACACATGCTCCACTATGTTTCATAGCAGCCTTGTTTATAATAGCC  700

seq1  AGGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG-  749

seq1  AAATGTGGTACATTTCCACAATGGAATACTACTCAGCTATTAAAAAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTACATTTCCACAATGGAATACTACTCAGCTATTAAAAAAATA  799

seq1  AATTTATGAAATTCCTAGGCAAATGGATGGACCTAGGGGGTATCATCCTG  848
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  AATTTATGAAATTCCTAGGC-AATGGATGGACCTAGGGGGTATCATCTTG  848

seq1  AGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGAT  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTGAGGTAACCCAATCAC-AAGGAACTCACACAATATGTACTCACTGAT  897

seq1  AAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAAC  948
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  AAGTGGATATTAGCCCAGAAACTTAG-ATACCCAAGATATAAGATAC-AC  945

seq1  TTGCCAAACGCATGAAATTCAAGAAGAACGAAGACCAAAGTGTGGACACT  998
      ||||| |||||||||||||| ||||| ||| |||||||||||| ||||||
seq2  TTGCC-AACGCATGAAATTC-AGAAG-ACG-AGACCAAAGTGTTGACACT  991

seq1  TTACCCTTTCTTAGAAATGGGAACAAAACACCCATGGAAGGAGTTACAGA  1048
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  TTACCCTTTCTTAG-AATGGGAACAAAACACCCATGGAAGGAGTTAC-GA  1039

seq1  GACAAAATTTGGAGCTGTGAAGAAAGGATGGACCA-TCTAGTGATTGCCA  1097
      |||||||||||||||||||||| |||||||||||| |||||||| || ||
seq2  GACAAAATTTGGAGCTGTGAAG-AAGGATGGACCATTCTAGTGA-TGGCA  1087

seq1  TATGCAGG---GATCCAT  1112
      ||||||||    ||||||
seq2  TATGCAGGATCTATCCAT  1105