BAC Information

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BAC

Clone NameB6Ng01-086B09
Chromosome5 (Build37)
Map Location 59,238,464 - 59,383,640
singlet/doubletdoublet
Overlap geneLOC100041396
Upstream geneLOC100041385
Downstream geneLOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B09.bB6Ng01-086B09.g
ACCDH899579DH899580
length1,156863
definitionDH899579|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B09, 5' end.DH899580|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,238,464 - 59,239,639)(59,382,779 - 59,383,640)
sequence
gaattctttaggttagcaagctcataattaaaagtcttcactaatgacat
ggtaattgttttaatggatttccaatgaagtgtgaagttccctgctgata
tgtcaacacaatatgaggcattgtgaaaggagcagcatagagcttcatag
aatttttgagttagaagagaccttaaaattatcaaaggtaacctttccgt
atttaaaaaaaaaaaaaaatgaaatcatccctggagctccggagaaggga
agtgagttgctgaaggtcaacactctgaatggaaattgtaggtgacctgt
acagcaaattgtttccatctcagtggtcattcattttgacctgcttttta
tttatatggtacctatatttttaaaaattgtttttatatttttcattata
tcaacagaaatatttatttattctctaataaaatggtgcatatgaaaaca
attttattccattagttctatgagaagattgcaaaggtgactttgaggat
caaaataaactgggctgagcatttcttggtccaatgctttcagaataaat
cttttgggaagtcaacgcaccaaaagttccgagggaatctcagcataatt
gaatgcatggcaagttaaatacctaaaatttgtttatgcttgtgtaagat
taaaatgcctaaaatatttcttcttattttggtttcagtagtacaaaaga
gagttgagcatatgacaaaatgtgttaaaaaggaaaatgaagggacaaaa
taagaagcttaaactacaaaaccaaaactatatcagagccaagtcaaaca
aagaagaaaaggttgcagacatttgaagaatcactggcagatctactttg
aatatattatcactacgaaaggaatagaaaattcatccattctgaaacct
gaatatactcactagaaataaaaggtacctgagaattttattttagtttt
tttcaattatcatattagaggtaccttgaaaatataggatagtttagctt
tttgagtatgagaaatataattagtgacagactcttgcttgtgtttactc
attcaaagtagtagtacagtattcatagaatactgatcttgaagttgttt
gctttgtgtactggggagaatacagagatgagtaaataaagggagtagac
agattt
gaattctatacactttaaaaatagtgatagagaaaaatgaaattgttaca
tttttataaacaggggatgaatatatctataaaaatgctttacttggaac
aagatatcattagtgtcctttagtgatgttacaagtacttccaaatatat
tttatatctaaaccacagaaatctcagttatttaaaatctatgatcatat
ggatattccattctctgtgatagttgttcattatgtggagagagataaaa
tgtaacaggctgtgttacttctcagaaaataattctgcattaaaggtaaa
ccctgaaagtagcgtgtaacctccttttaacctccatctaatcctgtcat
gctcttactgtaaactgtatccattgtatttactcttgatattgggttaa
ccaacatcattctttggtagttcatacaaaagaagatgaacttgtgtatt
acgcttgactaagtatttattttcagcagacattattctaaatcccagag
gcattgttatatttagattttgggtggagactgggaagagtggagatagg
gtaaaatgtggttgtgatgtatatagagaaaaaaacaagacagactttat
agaagttcaacacatcatttggatataagcattctggaattaaaacttac
agcatactaagggagaatttttaaattccagttggttattggcaatgcta
ggaagtgagacaatgtagtatattagctatatttaagtgaaatggctact
atctatataagaaggttaatgccatagtcatttcaaaagatatattgggc
taagatgaaaaaaatcagtgaaaacctaaaaacaatacaggatttttgag
ttaaggtctataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59238464_59239639
seq2: B6Ng01-086B09.b_50_1205

seq1  GAATTCTTTAGGTTAGCAAGCTCATAATTAAAAGTCTTCACTAATGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGTTAGCAAGCTCATAATTAAAAGTCTTCACTAATGACAT  50

seq1  GGTAATTGTTTTAATGGATTTCCAATGAAGTGTGAAGTTCCCTGCTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTGTTTTAATGGATTTCCAATGAAGTGTGAAGTTCCCTGCTGATA  100

seq1  TGTCAACACAATATGAGGCATTGTGAAAGGAGCAGCATAGAGCTTCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACACAATATGAGGCATTGTGAAAGGAGCAGCATAGAGCTTCATAG  150

seq1  AATTTTTGAGTTAGAAGAGACCTTAAAATTATCAAAGGTAACCTTTCCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGAGTTAGAAGAGACCTTAAAATTATCAAAGGTAACCTTTCCGT  200

seq1  ATTTAAAAAAAAAAAAAAATGAAATCATCCCTGGAGCTCCGGAGAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAAAAAAAAAATGAAATCATCCCTGGAGCTCCGGAGAAGGGA  250

seq1  AGTGAGTTGCTGAAGGTCAACACTCTGAATGGAAATTGTAGGTGACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTGCTGAAGGTCAACACTCTGAATGGAAATTGTAGGTGACCTGT  300

seq1  ACAGCAAATTGTTTCCATCTCAGTGGTCATTCATTTTGACCTGCTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATTGTTTCCATCTCAGTGGTCATTCATTTTGACCTGCTTTTTA  350

seq1  TTTATATGGTACCTATATTTTTAAAAATTGTTTTTATATTTTTCATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGGTACCTATATTTTTAAAAATTGTTTTTATATTTTTCATTATA  400

seq1  TCAACAGAAATATTTATTTATTCTCTAATAAAATGGTGCATATGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAAATATTTATTTATTCTCTAATAAAATGGTGCATATGAAAACA  450

seq1  ATTTTATTCCATTAGTTCTATGAGAAGATTGCAAAGGTGACTTTGAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCCATTAGTTCTATGAGAAGATTGCAAAGGTGACTTTGAGGAT  500

seq1  CAAAATAAACTGGGCTGAGCATTTCTTGGTCCAATGCTTTCAGAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAACTGGGCTGAGCATTTCTTGGTCCAATGCTTTCAGAATAAAT  550

seq1  CTTTTGGGAAGTCAACGCACCAAAAGTTCCGAGGGAATCTCAGCATAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGAAGTCAACGCACCAAAAGTTCCGAGGGAATCTCAGCATAATT  600

seq1  GAATGCATGGCAAGTTAAATACCTAAAATTTGTTTATGCTTGTGTAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATGGCAAGTTAAATACCTAAAATTTGTTTATGCTTGTGTAAGAT  650

seq1  TAAAATGCCTAAAATATTTCTTCTTATTTTGGTTTCAGTAGTACAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCCTAAAATATTTCTTCTTATTTTGGTTTCAGTAGTACAAAAGA  700

seq1  GAGTTGAGCATATGACAAAATGTGTTAAAAAGGAAAATGAAGGGACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGCATATGACAAAATGTGTTAAAAAGGAAAATGAAGGGACAAAA  750

seq1  TAAGAAGCTTAAACTACAAAACCAAAACTATATCAGAGCCAAGTCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCTTAAACTACAAAACCAAAACTATATCAGAGCCAAGTCAAACA  800

seq1  AAGAAGAAAAGGTTGCAGACATTTGAAGAATCACTGGCAGATCTACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAGGTTGCAGACATTTGAAGAATCACTGGCAGATCTACTTTG  850

seq1  AATATATTATCACTACGAAAGGAATAGAAAATTCATCCATTCTGAAACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTATCACTACGAAAGGAATAGAAAATTCATCCATTCTGAAACCT  900

seq1  GAATATACTCACTAGAAATAAAAGGTACCTGAGAATTTTATTTTAGTTTT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAATATACTCACTAGAAATAAAAGGTACCTGAGAATTTTATTTTAG-TTT  949

seq1  TTTTCAATTATCATATTAGAGGTACCTTGAAAATATAGGATAGTTTTAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTCAATTATCATATTAGAGGTACCTTGAAAATATAGGATAG-TTTAGC  998

seq1  TTTTTGAGTATGAGAAATATAAATTAGTGACAGAACTCTTGCTTGTGTTT  1050
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TTTTTGAGTATGAGAAATAT-AATTAGTGACAG-ACTCTTGCTTGTGTTT  1046

seq1  ACTCATTCCAAAGTAGGTAGTAACAGGTATTCATAAGGAATTACTGATTC  1100
      ||||||| ||||||| ||||| ||| |||||||||  ||| |||||||  
seq2  ACTCATT-CAAAGTA-GTAGT-ACA-GTATTCATA--GAA-TACTGAT--  1087

seq1  CTTTGAAGTTGTCTGCTTTGTGTTACTGTGAGAAATAACAGAAGATGGAG  1150
        |||||||||| ||||||||| ||||| | || |  |||| |||| |||
seq2  -CTTGAAGTTGTTTGCTTTGTG-TACTG-GGGAGAATACAG-AGAT-GAG  1132

seq1  TAAATTACAGGGAGTAGACAGTATTT  1176
      |||| || ||||||||||||| ||||
seq2  TAAA-TAAAGGGAGTAGACAG-ATTT  1156

seq1: chr5_59382779_59383640
seq2: B6Ng01-086B09.g_68_930 (reverse)

seq1  TCATAGACCTAAACTCAAAATTCCTGTATTGTTTCTA-GTTTTCACTGAT  49
      | |||||||| ||||||||| ||||||||||||| || ||||||||||||
seq2  TTATAGACCTTAACTCAAAAATCCTGTATTGTTTTTAGGTTTTCACTGAT  50

seq1  TTTTTTCATCTTAGCCCAATATATCTTTTGAAATGACTATGGCATTAATC  99
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTTCATCTTAGCCCAATATATCTTTTGAAATGACTATGGCATTAACC  100

seq1  TTCTTATATAGATAGTAGCCATTTCACTTAAATATAGCTAATATACTACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATAGATAGTAGCCATTTCACTTAAATATAGCTAATATACTACA  150

seq1  TTGTCTCACTTCCTAGCATTGCCAATAACCAACTGGAATTT-AAAATTCT  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTCTCACTTCCTAGCATTGCCAATAACCAACTGGAATTTAAAAATTCT  200

seq1  CCCTTAGTATGCTGTAAGTTTTAATTCCAGAATGCTTATTATCCAAATGA  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCTTAGTATGCTGTAAGTTTTAATTCCAGAATGCTTA-TATCCAAATGA  249

seq1  TGTGTTGAACTTCTATAAAGTCTGTCTTGTTTTTTTCTCTATATACATCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAACTTCTATAAAGTCTGTCTTGTTTTTTTCTCTATATACATCA  299

seq1  CAACCACATTTTACCCTATCTCCACTCTTCCCAGTCTCCACCCAAAATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATTTTACCCTATCTCCACTCTTCCCAGTCTCCACCCAAAATCT  349

seq1  AAATATAACAATGCCTCTGGGATTTAGAATAATGTCTGCTGAAAATAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAACAATGCCTCTGGGATTTAGAATAATGTCTGCTGAAAATAAAT  399

seq1  ACTTAGTCAAGCGTAATACACAAGTTCATCTTCTTTTGTATGAACTACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCAAGCGTAATACACAAGTTCATCTTCTTTTGTATGAACTACCA  449

seq1  AAGAATGATGTTGGTTAACCCAATATCAAGAGTAAATACAATGGATACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGATGTTGGTTAACCCAATATCAAGAGTAAATACAATGGATACAG  499

seq1  TTTACAGTAAGAGCATGACAGGATTAGATGGAGGTTAAAAGGAGGTTACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTAAGAGCATGACAGGATTAGATGGAGGTTAAAAGGAGGTTACA  549

seq1  CGCTACTTTCAGGGTTTACCTTTAATGCAGAATTATTTTCTGAGAAGTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACTTTCAGGGTTTACCTTTAATGCAGAATTATTTTCTGAGAAGTAA  599

seq1  CACAGCCTGTTACATTTTATCTCTCTCCACATAATGAACAACTATCACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTGTTACATTTTATCTCTCTCCACATAATGAACAACTATCACAG  649

seq1  AGAATGGAATATCCATATGATCATAGATTTTAAATAACTGAGATTTCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAATATCCATATGATCATAGATTTTAAATAACTGAGATTTCTGT  699

seq1  GGTTTAGATATAAAATATATTTGGAAGTACTTGTAACATCACTAAAGGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGATATAAAATATATTTGGAAGTACTTGTAACATCACTAAAGGAC  749

seq1  ACTAATGATATCTTGTTCCAAGTAAAGCATTTTTATAGATATATTCATCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGATATCTTGTTCCAAGTAAAGCATTTTTATAGATATATTCATCC  799

seq1  CCTGTTTATAAAAATGTAACAATTTCATTTTTCTCTATCACTATTTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTATAAAAATGTAACAATTTCATTTTTCTCTATCACTATTTTTAA  849

seq1  AGTGTATAGAATTC  862
      ||||||||||||||
seq2  AGTGTATAGAATTC  863