BAC Information

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BAC

Clone NameB6Ng01-086G19
Chromosome5 (Build37)
Map Location 151,689,691 - 151,837,689
singlet/doubletdoublet
Overlap geneLOC100040180, Kl, LOC667510
Upstream geneLOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin
Downstream geneStard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G19.bB6Ng01-086G19.g
ACCDH899829DH899830
length8931,152
definitionDH899829|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G19, 5' end.DH899830|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,836,793 - 151,837,689)(151,689,691 - 151,690,443)
sequence
gaattcaaaaggtcgcttgaggacacttttattagttaaaacaaaaaaca
aaaacaacaaaaaacaaggaggcagcagctctgccccagaggtagaaggt
aagaaagtagagaggggggaaaaaaaaagagagaaaacatcatggctttc
taaagccagcttggaggtcagccacatggcagacaagcagccacatggtg
gggtgggaagctttagagaaaaggggttggggggaagggtaccagagaaa
gcacaatgaggctctggccagctcctggagagctagaagaggagcaagtt
cagttttctgaaagacaccgtggtgacgttggaggaactgtgctaggagc
caggaattcttggtttaaagaaaatacagtatctccttaagcaatagtga
ctcatcctgtctgtttagcatggctagaggtggccctgcttccttgcagg
gtcccttagccaggtgactgactttgcccaactagaatgtcaggccccga
cctgaccattctgattactggagggaggtattttccccctgttcggcctc
tgctgctttaccagaaccatagcattaaagccagcttggctgcagaaaac
atgggttcgtctgcattatacccaccactcaacactgaaggggagtggaa
atgtaaggtttgtggtagttcaaaatgaccacggttgtaaaaagttaagt
aaatgtgttctttttcccagaatttgcgtcactgcaaggtgggctaagag
atagtcctctgattgttttgaaaggcccacacaatgtctccagtccttaa
gtttgcccccttatgtcgttaaaggttaacgaatgataaactgccagccc
taacagtacagaaaattgctcttaaaaatgtaaaaaggttggg
gaattctctgttgaggaattgcatctgtcagattgacctatgactttgtc
tatggggaatttcctgatttctaattgatgtaggagggcccagcccactg
tgggcggtgcaatccctaggctgacatcctgagctgtttaagaaaggtgg
ctgagcaagccagtcaatggcactcctccagggtgctccttcagtttcta
ctgtagcaatacccaattattgctattcaaattgatcctggcagtggcat
gtgttcctcgttacccaaccaatgttttgggttcctgaatgaaagacaca
cacacacacacacacacacacacacacacacaccctttataccttagctc
aatggctgggccacttcctaacctccacatggctgatgtatcttcctctg
aaattcccaagttattacttattaaaatctattttccgtctttgctgcct
cggacccagaactgctaccccttcagttgcatttcctggcacctgcatga
tggctatctctctggcttctgcatctctcaggactggtgtctatctctct
tccttcaatggcatgatggctatctctcctcttgtttcttcctcaatccc
ttgtgcaagaatcctgaaagtcccatctctgtctccctgatcagccattg
gcctccagcaactttgtcaatcaaaatcagctagagtcagggttcttcag
tgtcttttgtgtgagtgtaagagttcttgagcaattttgtggactgatta
acacaatacaagcagcattagaccaaacctacaacatcctctctccatgt
tcctgccttgactttactcaatgatggactgtgacatggaattataagcc
aaataagccctttctctctcaagttggttctggtcagtgttttatgacag
cacaggaagcaactagaacagggagggagggcaggatttcaacacagata
caggggacacaaatggtcaagatgggaccccaagcagactggatgccaat
tcctgtgctttctactttcattttcactctctaccagataggaatggctt
cagtgcattgtcagagcatgctcaagtaaactacctagaactgagtgacc
ttccaaagatctgtgttataatttcaattgcaggacctacttgggtgcaa
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_151836793_151837689
seq2: B6Ng01-086G19.b_45_937 (reverse)

seq1  CCCAGCCTTTTATACATTTTTTAAGAGCAGTTTTCTGTTACTGTTTAGGG  50
      |||| |||||| |||| |||||||||||| ||||||| ||||| ||||||
seq2  CCCAACCTTTT-TACA-TTTTTAAGAGCAATTTTCTG-TACTG-TTAGGG  46

seq1  CTGGCAGTTTATCATTCGTTAACCTTTAACGACATTAAGGGGGCAAACTT  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGGCAGTTTATCATTCGTTAACCTTTAACGACA-TAAGGGGGCAAACTT  95

seq1  AAGGACTGGAGACATTGTGTGGGCCTTTCAAAACAATCAGAGGACTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGGAGACATTGTGTGGGCCTTTCAAAACAATCAGAGGACTATCT  145

seq1  CTTAGCCCACCTTGCAGTGACGCAAATTCTGGG-AAAAGAACACATTTAC  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTAGCCCACCTTGCAGTGACGCAAATTCTGGGAAAAAGAACACATTTAC  195

seq1  TTAACTTTTTACAACCGTGGTCATTTTGAACTACCACAAACCTTACATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTTACAACCGTGGTCATTTTGAACTACCACAAACCTTACATTT  245

seq1  CCACTCCCCTTCAGTGTTGAGTGGTGGGTATAATGCAGACGAACCCATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCCTTCAGTGTTGAGTGGTGGGTATAATGCAGACGAACCCATGT  295

seq1  TTTCTGCAGCCAAGCTGGCTTTAATGCTATGGTTCTGGTAAAGCAGCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAGCCAAGCTGGCTTTAATGCTATGGTTCTGGTAAAGCAGCAGA  345

seq1  GGCCGAACAGGGGGAAAATACCTCCCTCCAGTAATCAGAATGGTCAGGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAACAGGGGGAAAATACCTCCCTCCAGTAATCAGAATGGTCAGGTC  395

seq1  GGGGCCTGACATTCTAGTTGGGCAAAGTCAGTCACCTGGCTAAGGGACCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGACATTCTAGTTGGGCAAAGTCAGTCACCTGGCTAAGGGACCC  445

seq1  TGCAAGGAAGCAGGGCCACCTCTAGCCATGCTAAACAGACAGGATGAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGAAGCAGGGCCACCTCTAGCCATGCTAAACAGACAGGATGAGTC  495

seq1  ACTATTGCTTAAGGAGATACTGTATTTTCTTTAAACCAAGAATTCCTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCTTAAGGAGATACTGTATTTTCTTTAAACCAAGAATTCCTGGC  545

seq1  TCCTAGCACAGTTCCTCCAACGTCACCACGGTGTCTTTCAGAAAACTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCACAGTTCCTCCAACGTCACCACGGTGTCTTTCAGAAAACTGAA  595

seq1  CTTGCTCCTCTTCTAGCTCTCCAGGAGCTGGCCAGAGCCTCATTGTGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCTCTTCTAGCTCTCCAGGAGCTGGCCAGAGCCTCATTGTGCTT  645

seq1  TCTCTGGTACCCTTCCCCCCAACCCCTTTTCTCTAAAGCTTCCCACCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTACCCTTCCCCCCAACCCCTTTTCTCTAAAGCTTCCCACCCCA  695

seq1  CCATGTGGCTGCTTGTCTGCCATGTGGCTGACCTCCAAGCTGGCTTTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGCTGCTTGTCTGCCATGTGGCTGACCTCCAAGCTGGCTTTAGA  745

seq1  AAGCCATGATGTTTTCTCTCTTTTTTTTTCCCCCCTCTCTACTTTCTTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGATGTTTTCTCTCTTTTTTTTTCCCCCCTCTCTACTTTCTTAC  795

seq1  CTTCTACCTCTGGGGCAGAGCTGCTGCCTCCTTGTTTTTTGTTGTTTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCTCTGGGGCAGAGCTGCTGCCTCCTTGTTTTTTGTTGTTTTTG  845

seq1  TTTTTTGTTTTAACTAATAAAAGTGTCCTCAAGCGACCTTTTGAATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTAACTAATAAAAGTGTCCTCAAGCGACCTTTTGAATTC  893

seq1: chr5_151689691_151690443
seq2: B6Ng01-086G19.g_488_1218

seq1  TTAAAATCTATTTTCCGTCTTTGCTGCCTCGGACCCAGAACTGCTACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTATTTTCCGTCTTTGCTGCCTCGGACCCAGAACTGCTACCCC  50

seq1  TTCAGTTGCATTTCCTGGCACCTGCATGATGGCTATCTCTCTGGCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGCATTTCCTGGCACCTGCATGATGGCTATCTCTCTGGCTTCTG  100

seq1  CATCTCTCAGGACTGGTGTCTATCTCTCTTCCTTCAATGGCATGATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCAGGACTGGTGTCTATCTCTCTTCCTTCAATGGCATGATGGCT  150

seq1  ATCTCTCCTCTTGTTTCTTCCTCAATCCCTTGTGCAAGAATCCTGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCTCTTGTTTCTTCCTCAATCCCTTGTGCAAGAATCCTGAAAGT  200

seq1  CCCATCTCTGTCTCCCTGATCAGCCATTGGCCTCCAGCAACTTTGTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCTGTCTCCCTGATCAGCCATTGGCCTCCAGCAACTTTGTCAAT  250

seq1  CAAAATCAGCTAGAGTCAGGGTTCTTCAGTGTCTTTTGTGTGAGTGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAGCTAGAGTCAGGGTTCTTCAGTGTCTTTTGTGTGAGTGTAAG  300

seq1  AGTTCTTGAGCAATTTTGTGGACTGATTAACACAATACAAGCAGCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGAGCAATTTTGTGGACTGATTAACACAATACAAGCAGCATTAG  350

seq1  ACCAAACCTACAACATCCTCTCTCCATGTTCCTGCCTTGACTTTACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCTACAACATCCTCTCTCCATGTTCCTGCCTTGACTTTACTCAA  400

seq1  TGATGGACTGTGACATGGAATTATAAGCCAAATAAGCCCTTTCTCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGACTGTGACATGGAATTATAAGCCAAATAAGCCCTTTCTCTCTCA  450

seq1  AGTTGGTTCTGGTCAGTGTTTTATGACAGCAACAGGAAGCAACTAGAACA  500
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTTGGTTCTGGTCAGTGTTTTATGACAGC-ACAGGAAGCAACTAGAACA  499

seq1  GGGAGGGAGGGCAGGATTTCAACACAGATAACAGGGGACACAAATGGTCA  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGAGGGAGGGCAGGATTTCAACACAGAT-ACAGGGGACACAAATGGTCA  548

seq1  AGATGGGACCCCAAAGCAGACTGGATGCCAATTCCTGTGCTTTCTACTTT  600
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AGATGGGACCCC-AAGCAGACTGGATGCCAATTCCTGTGCTTTCTAC-TT  596

seq1  TCATTTCCAACTCCTCTAACCAAGATAGGAATGGCTTCAAGGTGGCATTG  650
      |||||| | ||| |||||  | |||||||||||||||||  || ||||||
seq2  TCATTTTC-ACT-CTCTA--CCAGATAGGAATGGCTTCA--GT-GCATTG  639

seq1  TCAAGAGCATGCTCGAGGTAGACTA-CTAGAAACCTGAGTGGCACTTCCA  699
      || ||||||||||| | ||| |||| ||||||  ||||||| | ||||||
seq2  TC-AGAGCATGCTC-AAGTAAACTACCTAGAA--CTGAGTGAC-CTTCCA  684

seq1  AAAGGAATCTGTGTACTAATTTCCCATTGTCAGCACCTACTTGGTGTGCC  749
      ||    ||||||||  |||||| | |||| ||| |||||||||| ||| |
seq2  AA---GATCTGTGTTATAATTT-CAATTG-CAGGACCTACTTGG-GTG-C  727

seq1  AATC  753
      ||||
seq2  AATC  731