BAC Information

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BAC

Clone NameB6Ng01-086L13
Chromosome5 (Build37)
Map Location 34,521,754 - 34,643,547
singlet/doubletdoublet
Overlap geneMxd4, Zfyve28
Upstream geneSpon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882
Downstream geneEG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086L13.bB6Ng01-086L13.g
ACCDH900043DH900044
length7951,247
definitionDH900043|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L13, 5' end.DH900044|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,521,754 - 34,522,548)(34,642,316 - 34,643,547)
sequence
gaattccctcctgacctagataatatttcccctccggagcagcctgccac
agatacctttatggatatggttgtccacagatccctcagggcctaagagc
ccagggaacaaatactgtatcacctattttgcactatatagtgtgctctt
gtcatcacaaaaacatgagttgataaggctaaaggggtgctgaggaccag
ctctctctgccgagtctgtgatctcgttagaaattgcattagtttaggtt
tttcttcctgtatccatttgtgtgaatctatttttttttttcacaaaact
ggaaccacattcctagtacttgttcatatggctgcaaagctttcctgcct
ggcctaaaggggtaactaagttcacctccagaggctatctctgacatcac
catgaatagcaggcactgctgctgtgtctgcatagttcacctgaccagtg
tctgcaggaaaccagtgctcttcccaagtaatgcccgagcatggagctag
ccaggccctatagaaagccaaggtggtttctaagtcagtatggcttgctt
tgggcagattcttaaaagtgtaactggcaagtcagagacagagatttttg
gttttttggttttgggtttttttgttttttgggttttgttttgttttgtt
ttttgaggatttagcctgctgcccaactgtcctctcatggtcagtgccca
cacacactcctttaacagtgttttattttttaatttgcctgtttgttttg
taaaaacagagaaaaaggaggtgtagagttgggtgggtagggagg
gaattcatataaaggctttcacatgaagaaacattatccagaagaaggct
gcacgattaagggaagtctgcgagaacttgtcctgaataaaaagcaggat
gggaagtgctgctagtaggtagcagcatgagttctgttccctcagccagg
catagtggttggtacacacctttaaccccagcgcttcgggtggaggcagg
ctgacttcaaggccaggcaggagtacaaaggaagaccttgtcctgggagt
cagaaccatcggggtccactcattgccccattacaccacctctaagcact
gctctgggagcaagacctttgccacaggagcctttgggggacaattcaga
cccaaatgatgagatgacccatgtgtgatacatgttaattgtttttaaaa
gtaattagggttttcaaagtaattaagttttggaggaaaaggaagatgag
ggtatctgctagtgccagtacaacacggacaaatttggtgggacacttga
tgctgagtctttccataaagaaatttggaaagtaagtttcaagagcttta
tttatatcacgaccctttaatagagctactgtacttctgggaagggaagg
aaagcttccacaacacaggaggtgtccatgtgcacacatctggagaggag
ggctgggcagcagtagaaacaggaaccagggtccaacagcagggtgaccc
aagggtcaagcatcattgctccgtcccacagaccagtatgacgtgaccat
taagacaacgtttatgttaagatttacacgacaacaaaatagcacaaacc
acaatgaaaccacgggctatggctctgtggccatcgaatacatctgcccc
ttctctctgcatttctgcacccacagttcactgactcttctctaataact
tcaaaattagtaactgtttccccacagttggccaccccttaaagttctcc
ctttctcctatgactgtgaacccagagctatcttgctgcttatgttcttg
aaaagtccagccctgtagcatcttttttatgctaatacccacttgtccac
cagtctgggcctccgacatgaaattttttccccctccccaaccaaccttc
cccatgggctagctaccaagaactggggaggccaggcctgaaggttagaa
cacacagacccgttggcttttctgtctactcaggtcagacctgggaacct
tggcctaaagtgctctctaatcttggtgtgccactgatggtccctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_34521754_34522548
seq2: B6Ng01-086L13.b_46_840

seq1  GAATTCCCTCCTGACCTAGATAATATTTCCCCTCCGGAGCAGCCTGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCTGACCTAGATAATATTTCCCCTCCGGAGCAGCCTGCCAC  50

seq1  AGATACCTTTATGGATATGGTTGTCCACAGATCCCTCAGGGCCTAAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTTTATGGATATGGTTGTCCACAGATCCCTCAGGGCCTAAGAGC  100

seq1  CCAGGGAACAAATACTGTATCACCTATTTTGCACTATATAGTGTGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAACAAATACTGTATCACCTATTTTGCACTATATAGTGTGCTCTT  150

seq1  GTCATCACAAAAACATGAGTTGATAAGGCTAAAGGGGTGCTGAGGACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACAAAAACATGAGTTGATAAGGCTAAAGGGGTGCTGAGGACCAG  200

seq1  CTCTCTCTGCCGAGTCTGTGATCTCGTTAGAAATTGCATTAGTTTAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGCCGAGTCTGTGATCTCGTTAGAAATTGCATTAGTTTAGGTT  250

seq1  TTTCTTCCTGTATCCATTTGTGTGAATCTATTTTTTTTTTTCACAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTGTATCCATTTGTGTGAATCTATTTTTTTTTTTCACAAAACT  300

seq1  GGAACCACATTCCTAGTACTTGTTCATATGGCTGCAAAGCTTTCCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCACATTCCTAGTACTTGTTCATATGGCTGCAAAGCTTTCCTGCCT  350

seq1  GGCCTAAAGGGGTAACTAAGTTCACCTCCAGAGGCTATCTCTGACATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAAGGGGTAACTAAGTTCACCTCCAGAGGCTATCTCTGACATCAC  400

seq1  CATGAATAGCAGGCACTGCTGCTGTGTCTGCATAGTTCACCTGACCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAGCAGGCACTGCTGCTGTGTCTGCATAGTTCACCTGACCAGTG  450

seq1  TCTGCAGGAAACCAGTGCTCTTCCCAAGTAATGCCCGAGCATGGAGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGAAACCAGTGCTCTTCCCAAGTAATGCCCGAGCATGGAGCTAG  500

seq1  CCAGGCCCTATAGAAAGCCAAGGTGGTTTCTAAGTCAGTATGGCTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCTATAGAAAGCCAAGGTGGTTTCTAAGTCAGTATGGCTTGCTT  550

seq1  TGGGCAGATTCTTAAAAGTGTAACTGGCAAGTCAGAGACAGAGATTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGATTCTTAAAAGTGTAACTGGCAAGTCAGAGACAGAGATTTTTG  600

seq1  GTTTTTTGGTTTTGGGTTTTTTTGTTTTTTGGGTTTTGTTTTGTTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGGTTTTGGGTTTTTTTGTTTTTTGGGTTTTGTTTTGTTTTGTT  650

seq1  TTTTGAGGATTTAGCCTGCTGCCCAACTGTCCTCTCATGGTCAGTGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGATTTAGCCTGCTGCCCAACTGTCCTCTCATGGTCAGTGCCCA  700

seq1  CACACACTCCTTTAACAGTGTTTTATTTTTTAATTTGCCTGTTTGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCCTTTAACAGTGTTTTATTTTTTAATTTGCCTGTTTGTTTTG  750

seq1  TAAAAACAGAGAAAAAGGAGGTGTAGAGTTGGGTGGGTAGGGAGG  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAGAGAAAAAGGAGGTGTAGAGTTGGGTGGGTAGGGAGG  795

seq1: chr5_34642316_34643547
seq2: B6Ng01-086L13.g_68_1314 (reverse)

seq1  AGAGGGACC-----TAG-GCACCAAGATGAGGAGACCCTAAGAGCCCAAG  44
      |||||||||     | |  ||||||||| | |||| |     || |||||
seq2  AGAGGGACCATCAGTGGCACACCAAGATTA-GAGAGCACTTTAGGCCAAG  49

seq1  GT--CCAGACCTGACACTGAGTAGACAGGAAGGCCAACGGGGTCTGTGTG  92
      ||  ||||  ||||| |||||||||||| || |||||| |||||||||||
seq2  GTTCCCAGGTCTGAC-CTGAGTAGACAGAAAAGCCAAC-GGGTCTGTGTG  97

seq1  -TCTAACCTTCAGACCTGG-CTTCCCAG-TCTGTGTAGCTAGCCCATGGA  139
       |||||||||||| ||||| || ||||| |||  ||||||||||||||| 
seq2  TTCTAACCTTCAGGCCTGGCCTCCCCAGTTCTTGGTAGCTAGCCCATGGG  147

seq1  G-AGGTTGGTT-GTGAGGAG--AAAAATGTCATGTCGGA-GCCCAGACT-  183
      | ||||||||| | |||| |  |||||| |||||||||| ||||||||| 
seq2  GAAGGTTGGTTGGGGAGGGGGAAAAAATTTCATGTCGGAGGCCCAGACTG  197

seq1  GTGGACAAGTGGGTATTAGCAT-AAAAAGATGCTACAGGGCTGGAC-TAT  231
      |||||||||||||||||||||| ||||||||||||||||||||||| | |
seq2  GTGGACAAGTGGGTATTAGCATAAAAAAGATGCTACAGGGCTGGACTTTT  247

seq1  CAAGAACATAAGCAGCCAGATAGCTCTGGGGTTCACAGTCATAGGAGAAA  281
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CAAGAACATAAGCAGCAAGATAGCTCT-GGGTTCACAGTCATAGGAGAAA  296

seq1  GGGAGAACTTTAAAGGGGTGGCCAACTGTGGGGAAACAGTTACTAATTTT  331
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAACTTT-AAGGGGTGGCCAACTGTGGGGAAACAGTTACTAATTTT  345

seq1  GAAGTTATTAGAGAAGAGTCAGTGAACTGTGGGTGCAGAAATGCAGAGAG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATTAGAGAAGAGTCAGTGAACTGTGGGTGCAGAAATGCAGAGAG  395

seq1  AAGGGGCAGATGTATTCGATGGCCACAGAGCCATAGCCCGTGGTTTCATT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCAGATGTATTCGATGGCCACAGAGCCATAGCCCGTGGTTTCATT  445

seq1  GTGGTTTGTGCTATTTTGTTGTCGTGTAAATCTTAACAT-AACGTTGTCT  480
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGGTTTGTGCTATTTTGTTGTCGTGTAAATCTTAACATAAACGTTGTCT  495

seq1  TAATGGTCACGTCATACTGGTCTGTGGGACGGAGCAATGATGCTTGACCC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTCACGTCATACTGGTCTGTGGGACGGAGCAATGATGCTTGACCC  545

seq1  TTGGGTCACCCTGCTGTTGGACCCTGGTTCCTGTTTCTACTGCTGCCCAG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCACCCTGCTGTTGGACCCTGGTTCCTGTTTCTACTGCTGCCCAG  595

seq1  CCCTCCTCTCCAGATGTGTGCACATGGACACCTCCTGTGTTGTGGAAGCT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTCCAGATGTGTGCACATGGACACCTCCTGTGTTGTGGAAGCT  645

seq1  TTCCTTCCCTTCCCAGAAGTACAGTAGCTCTATTAAAGGGTCGTGATATA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCTTCCCAGAAGTACAGTAGCTCTATTAAAGGGTCGTGATATA  695

seq1  AATAAAGCTCTTGAAACTTACTTTCCAAATTTCTTTATGGAAAGACTCAG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCTCTTGAAACTTACTTTCCAAATTTCTTTATGGAAAGACTCAG  745

seq1  CATCAAGTGTCCCACCAAATTTGTCCGTGTTGTACTGGCACTAGCAGATA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTGTCCCACCAAATTTGTCCGTGTTGTACTGGCACTAGCAGATA  795

seq1  CCCTCATCTTCCTTTTCCTCCAAAACTTAATTACTTTGAAAACCCTAATT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCTTCCTTTTCCTCCAAAACTTAATTACTTTGAAAACCCTAATT  845

seq1  ACTTTTAAAAACAATTAACATGTATCACACATGGGTCATCTCATCATTTG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAAACAATTAACATGTATCACACATGGGTCATCTCATCATTTG  895

seq1  GGTCTGAATTGTCCCCCAAAGGCTCCTGTGGCAAAGGTCTTGCTCCCAGA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAATTGTCCCCCAAAGGCTCCTGTGGCAAAGGTCTTGCTCCCAGA  945

seq1  GCAGTGCTTAGAGGTGGTGTAATGGGGCAATGAGTGGACCCCGATGGTTC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCTTAGAGGTGGTGTAATGGGGCAATGAGTGGACCCCGATGGTTC  995

seq1  TGACTCCCAGGACAAGGTCTTCCTTTGTACTCCTGCCTGGCCTTGAAGTC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCAGGACAAGGTCTTCCTTTGTACTCCTGCCTGGCCTTGAAGTC  1045

seq1  AGCCTGCCTCCACCCGAAGCGCTGGGGTTAAAGGTGTGTACCAACCACTA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCTCCACCCGAAGCGCTGGGGTTAAAGGTGTGTACCAACCACTA  1095

seq1  TGCCTGGCTGAGGGAACAGAACTCATGCTGCTACCTACTAGCAGCACTTC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTGAGGGAACAGAACTCATGCTGCTACCTACTAGCAGCACTTC  1145

seq1  CCATCCTGCTTTTTATTCAGGACAAGTTCTCGCAGACTTCCCTTAATCGT  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGCTTTTTATTCAGGACAAGTTCTCGCAGACTTCCCTTAATCGT  1195

seq1  GCAGCCTTCTTCTGGATAATGTTTCTTCATGTGAAAGCCTTTATATGAAT  1230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTCTTCTGGATAATGTTTCTTCATGTGAAAGCCTTTATATGAAT  1245

seq1  TC  1232
      ||
seq2  TC  1247