BAC Information

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BAC

Clone NameB6Ng01-086M18
Chromosome5 (Build37)
Map Location 15,205,727 - 15,380,083
singlet/doubletdoublet
Overlap geneSpeer7-ps1, 4930519H02Rik
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneLOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086M18.bB6Ng01-086M18.g
ACCDH900099DH900100
length1,2061,160
definitionDH900099|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M18, 5' end.DH900100|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,205,727 - 15,206,939)(15,378,919 - 15,380,083)
sequence
gaattcacatggaattagatttttcaaatttttcattttattaaaatgag
agaatcattgtctacaaattcttttatgtccaactatgcaaatacaactt
caaggactctggaaattctatgatggtgctaacaatttcaggaatttcca
acaggacacataacaagaaaaatccatatagtacaagtcttaggtgttag
ctgaattttcaaatcagaaagcagagataagaatttacattttaagtaac
tttaggatctgtgagtgttgttaatttaaataccgttatgaggagtccag
gtacagcaggatattaggccatgcaattgtataggaagatacagaagcta
catagtacttcaagtgttgctatcatatatgtctaagtgacattttacag
atcaatgccaagtaaaatcaaaatatagtcccctacccattacatcttaa
aacacaatgatctatcaacagttgtcatttcacagcagaaagaaagcagt
aggtataaattgaacacagaactgcttctcttgtaagaaatgaacacata
tagatatagatacatgtatacttatacattctctttgaaattcaaggtga
ttaatttgctttactaccatataaaaacaatctcgctgtggtcagggaaa
aaagctcattttccacatttaaaaagtacattggccgggtgtggtggcac
acgcctttaatcccagctctggggaggcagaagcaagcagatttctgagt
tggaggccagcctggtctacaaagtgagttccaggacagccagggctata
cagagaaaccctgtctagaaaaaccaaaaaaaagtacacattgtctctgg
caaggaatacatccatagaccacttagacctatgtgatttggctagaatg
cagacattccctaattacacacctttaatcccaaacaatgaaagtaatgt
tcatttatagaagaagagtcatgtttgtaagtgacatctaattgaggggc
aaagtgatgaatcagaagaaaataaccagaatgagtcagagaataggata
tgctcaattcttatgagacattcgaggaaagaaaggacttagagagttgg
gggagggagggcagtttacagagaacaggttacaggtgaggacgaacagc
ttagaaatagaagagactgatgaggtgaacgatgatagagttagtttgag
gtaaac
gaattctccaactgagcacaatgctctaaataactcaatagaattctctg
aaaagataaaaagcagctaattcagcttttggcacctcaatgtaaatcct
ttctaattttggagttttaagtgtattccaactgaaagctggttgtctga
ctcattacccttagagtcagccaaatttttattcggagaaaagaaagaac
tctttactcttatttataaactaataacaaagttttattcactttatctt
tataagtgacattcaagatatatgaaaataagaagtcaatataaaaaatt
aaaagtttgtcccaactgggaagcaaggagatttccaaaaaaaaaaaaaa
aaaaaaaaaccaaaataacattaaagtaaatagtgtactctctttagaca
ttcactatgatatttccaccacagaaataattacatgttaggtaaaagta
gcaattagaaaaaggcaagaaagctattggaaagaaaatgtataatcata
tcacatatatgaagtttggtagaaaaaaagcattacattttgagcaagaa
aaatccaagagaaaaatggttgagaggtatttgactgattataaagttta
aaccaagattaaagcatagaaatacataaaacattctgggaggaagaggg
acaaacaagtactgattaagggaagatgtggaccattcaagaaagaccca
ttggcatagactttgcttaggtcttgcttgtgcatctatttctgtaaaag
aatgcttcacagcagacatactgatactctgtctcttacaaactttcttc
cccatctttggggattatgctgatggaatgctcatggagtctcaactcta
gacaaagaccttcaggcaactgacacctgcctgagaaggaagcattgacc
tctgccaaggatgagattccaaacaggtcacccacaccagtgccaagtgg
tcaagtggtcggtcctgcatcatatgcacacaaacaagaaaggcccttct
cagcagctgcatgcataagaagaatggggaggctgattgggagggatggg
ttttactaaaggggagggattcacctaagcattactttctagaaaaggag
aatctggatcattgaacaaccaagggaagtcttcgttaactctgttacgc
atgtagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15205727_15206939
seq2: B6Ng01-086M18.b_46_1251

seq1  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAATGAG  50

seq1  AGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACTT  100

seq1  CAAGGACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCCA  150

seq1  ACAGGACACATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACACATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTAG  200

seq1  CTGAATTTTCAAATCAGAAAGCAGAGATAAGAATTTACATTTTAAGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTCAAATCAGAAAGCAGAGATAAGAATTTACATTTTAAGTAAC  250

seq1  TTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCAG  300

seq1  GTACAGCAGGATATTAGGCCATGCAATTGTATAGGAAGATACAGAAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCAGGATATTAGGCCATGCAATTGTATAGGAAGATACAGAAGCTA  350

seq1  CATAGTACTTCAAGTGTTGCTATCATATATGTCTAAGTGACATTTTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACTTCAAGTGTTGCTATCATATATGTCTAAGTGACATTTTACAG  400

seq1  ATCAATGCCAAGTAAAATCAAAATATAGTCCCCTACCCATTACATCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCCAAGTAAAATCAAAATATAGTCCCCTACCCATTACATCTTAA  450

seq1  AACACAATGATCTATCAACAGTTGTCATTTCACAGCAGAAAGAAAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATGATCTATCAACAGTTGTCATTTCACAGCAGAAAGAAAGCAGT  500

seq1  AGGTATAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACATA  550

seq1  TAGATATAGATACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAGATACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGA  600

seq1  TTAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGGAAA  650

seq1  AAAGCTCATTTTCCACATTTAAAAAGTACATTGGCCGGGTGTGGTGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATTTTCCACATTTAAAAAGTACATTGGCCGGGTGTGGTGGCAC  700

seq1  ACGCCTTTAATCCCAGCTCTGGGGAGGCAGAAGCAAGCAGATTTCTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCTCTGGGGAGGCAGAAGCAAGCAGATTTCTGAGT  750

seq1  TGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATA  800

seq1  CAGAGAAACCCTGTCTAGAAAAACCAAAAAAAAGTACACATTGTCTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTAGAAAAACCAAAAAAAAGTACACATTGTCTCTGG  850

seq1  CAAGGAATACATCCATAGACCACTTAGACCTATGTGATTTGGCTAGAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATACATCCATAGACCACTTAGACCTATGTGATTTGGCTAGAATG  900

seq1  CAGACATTCCCTAATTACACACCTTTAATCCCAAACAATGAAAGTAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTCCCTAATTACACACCTTTAATCCCAAACAATGAAAGTAATGT  950

seq1  TCATTTATAGAAGGAAGAGTCATGTTTGTAAGTGACATCTAATTGAGGGG  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATTTATAGAA-GAAGAGTCATGTTTGTAAGTGACATCTAATTGAGGGG  999

seq1  CAAAGTGATGAATCAGA--GAGATAA-CAGAATGAGTCAGAG-ATAGGAT  1046
      |||||||||||||||||   | |||| ||||||||||||||| |||||||
seq2  CAAAGTGATGAATCAGAAGAAAATAACCAGAATGAGTCAGAGAATAGGAT  1049

seq1  ATGCCCAATTCTTATGAGGACA-TCGAGGAAAGAAAGGACTTAAGAGAGT  1095
      |||| |||||||||||| |||| ||||||||||||||||||| |||||||
seq2  ATGCTCAATTCTTATGA-GACATTCGAGGAAAGAAAGGACTT-AGAGAGT  1097

seq1  T-GGGGAGGGAGGGCAGTTTACAGAG-ACAGGTTACAGGTGAGGACAGAA  1143
      | |||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  TGGGGGAGGGAGGGCAGTTTACAGAGAACAGGTTACAGGTGAGGAC-GAA  1146

seq1  CAAGCCAGAGAATAAGAAGAGACCAGATAGAAGGTTAGAACAGATTGATA  1193
      ||   |  ||||  |||||||| | |||   ||||  |||| || |||||
seq2  CA--GCTTAGAAATAGAAGAGA-CTGAT--GAGGT--GAAC-GA-TGATA  1187

seq1  GAGTTAGTTTGAGGGTAAAC  1213
      |||||||||||| |||||||
seq2  GAGTTAGTTTGA-GGTAAAC  1206

seq1: chr5_15378919_15380083
seq2: B6Ng01-086M18.g_71_1230 (reverse)

seq1  GTCTCTACATCTGCTGTACAGGAGTTACACGAAGACTTCCCTTTGTTTGT  50
      |||||||||  ||| |||   |||||| ||||||||||||||| |||  |
seq2  GTCTCTACA--TGC-GTAACAGAGTTA-ACGAAGACTTCCCTTGGTTGTT  46

seq1  CATTTGGCTCAGATTTCTCCCTTTTCTAG-AAGTAATGCTTTAGTGAAT-  98
      ||  ||   |||| |||| |||||||||| |||||||||||  |||||| 
seq2  CA-ATGATCCAGA-TTCT-CCTTTTCTAGAAAGTAATGCTTAGGTGAATC  93

seq1  CCTTCACTTTAGTAAAACCCATCC--TCCAATCAGCCT-CTCATTC-TCT  144
      ||| | ||||||||||||||||||   ||||||||||| | ||||| |||
seq2  CCTCCCCTTTAGTAAAACCCATCCCTCCCAATCAGCCTCCCCATTCTTCT  143

seq1  TATGCATGCAGGCTGCTGAG-AGGGCTTTTCTTGTTTGTGTGCATATGAT  193
      |||||||||| ||||||||| ||||| |||||||||||||||||||||| 
seq2  TATGCATGCA-GCTGCTGAGAAGGGCCTTTCTTGTTTGTGTGCATATGA-  191

seq1  TGCAGGACCGACCACTTGACCACTTGGCACTTGGTGTTGGGTGACCTGTT  243
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  TGCAGGACCGACCACTTGACCACTTGGCAC-TGGTG-TGGGTGACCTGTT  239

seq1  TGGAATCTCATCCTTGGCAGAGGTCAATGCTTCCTTTCTCAGGCAGGTGT  293
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGAATCTCATCCTTGGCAGAGGTCAATGCTTCC-TTCTCAGGCAGGTGT  288

seq1  CAGTTGCCTGAAGGTCTTTGTCTAGAGTTGAGACTCCATGAGCATTCCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCTGAAGGTCTTTGTCTAGAGTTGAGACTCCATGAGCATTCCAT  338

seq1  CAGCATAATCCCCAAAGATGGGGAAGAAAGTTTGTAAGAGACAGAGTATC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAATCCCCAAAGATGGGGAAGAAAGTTTGTAAGAGACAGAGTATC  388

seq1  AGTATGTCTGCTGTGAAGCATTCTTTTACAGAAATAGATGCACAAGCAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCTGCTGTGAAGCATTCTTTTACAGAAATAGATGCACAAGCAAG  438

seq1  ACCTAAGCAAAGTCTATGCCAATGGGTCTTTCTTGAATGGTCCACATCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGCAAAGTCTATGCCAATGGGTCTTTCTTGAATGGTCCACATCTT  488

seq1  CCCTTAATCAGTACTTGTTTGTCCCTCTTCCTCCCAGAATGTTTTATGTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATCAGTACTTGTTTGTCCCTCTTCCTCCCAGAATGTTTTATGTA  538

seq1  TTTCTATGCTTTAATCTTGGTTTAAACTTTATAATCAGTCAAATACCTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGCTTTAATCTTGGTTTAAACTTTATAATCAGTCAAATACCTCT  588

seq1  CAACCATTTTTCTCTTGGATTTTTCTTGCTCAAAATGTAATGCTTTTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTTTTCTCTTGGATTTTTCTTGCTCAAAATGTAATGCTTTTTTT  638

seq1  CTACCAAACTTCATATATGTGATATGATTATACATTTTCTTTCCAATAGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAACTTCATATATGTGATATGATTATACATTTTCTTTCCAATAGC  688

seq1  TTTCTTGCCTTTTTCTAATTGCTACTTTTACCTAACATGTAATTATTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCCTTTTTCTAATTGCTACTTTTACCTAACATGTAATTATTTCT  738

seq1  GTGGTGGAAATATCATAGTGAATGTCTAAAGAGAGTACACTATTTACTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAAATATCATAGTGAATGTCTAAAGAGAGTACACTATTTACTTT  788

seq1  AATGTTATTTTGGTTTTTTTTTTTTTTTTTTTTTTTGGAAATCTCCTTGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTTTGGTTTTTTTTTTTTTTTTTTTTTTTGGAAATCTCCTTGC  838

seq1  TTCCCAGTTGGGACAAACTTTTAATTTTTTATATTGACTTCTTATTTTCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTTGGGACAAACTTTTAATTTTTTATATTGACTTCTTATTTTCA  888

seq1  TATATCTTGAATGTCACTTATAAAGATAAAGTGAATAAAACTTTGTTATT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTGAATGTCACTTATAAAGATAAAGTGAATAAAACTTTGTTATT  938

seq1  AGTTTATAAATAAGAGTAAAGAGTTCTTTCTTTTCTCCGAATAAAAATTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAAATAAGAGTAAAGAGTTCTTTCTTTTCTCCGAATAAAAATTT  988

seq1  GGCTGACTCTAAGGGTAATGAGTCAGACAACCAGCTTTCAGTTGGAATAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTCTAAGGGTAATGAGTCAGACAACCAGCTTTCAGTTGGAATAC  1038

seq1  ACTTAAAACTCCAAAATTAGAAAGGATTTACATTGAGGTGCCAAAAGCTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAACTCCAAAATTAGAAAGGATTTACATTGAGGTGCCAAAAGCTG  1088

seq1  AATTAGCTGCTTTTTATCTTTTCAGAGAATTCTATTGAGTTATTTAGAGC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTGCTTTTTATCTTTTCAGAGAATTCTATTGAGTTATTTAGAGC  1138

seq1  ATTGTGCTCAGTTGGAGAATTC  1165
      ||||||||||||||||||||||
seq2  ATTGTGCTCAGTTGGAGAATTC  1160