BAC Information

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BAC

Clone NameB6Ng01-086N21
Chromosome5 (Build37)
Map Location 65,052,035 - 65,053,196
singlet/doubletsinglet
Overlap genenone
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198
Downstream geneKlf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086N21.bB6Ng01-086N21.g
ACCDH900152DH900153
length1,1911,177
definitionDH900152|Mus musculus domesticus DNA, BAC clone: B6Ng01-086N21, 5' end.DH900153|Mus musculus domesticus DNA, BAC clone: B6Ng01-086N21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaccagcaggagtgtcaagaaaagttctgggctgtgtctctct
cagtgaagctaagatcattgaagatgtgggatcaacaatagatgactcat
tgcaatgaacaaaccaagctttgcctccatcacggtccaaggagtcctat
ttatactctctccaaacatcatgtgtcctacactggacttgcttcaacac
ttgtcttgcctcagcacgtgagtctgtctcagctgacatcattctgccaa
ttgcccaagtccttggaaatgacaagaagccacagcacaccaccaaaaat
tttttggtgcatttctctctagagtcccaacaaatggagctcaacacaat
ggaaagcagaccaatacacgcatgttgatagcgaagactccttcaccaca
cttcagcagaacatcctttctcctgtgtctgcttcagcaaaatgttctgc
cttagcctttcacctgtgtcagattcagtgaaacttgccttcacatgtct
gctttagcaaaatgtccttttgcttgtatccatttcaggaaaacactcct
ttacatgtttgccccagcaaaacaccaaccaacacaactgactttcccaa
gaacccttaagtttccacttcaaggacccttggcagcaactggggccagg
accacctcatggcttcctcatatctgcctgttcctcaccactgtggagtc
tttggtttcacctttctccacagtgtttttcttctgtgctccccaggcca
ccaggacttaggtgtctttcttcaggtcatcccagccattggaggagacc
ctaggactatgcttttaaacagtgttgtgattatgaacgagtttggaact
tttaaaggtagaaaaaataaattatgctagtgtctgaagagtatagggac
agtcagtagaacaagatctttggaatgagatgtctttcatattcttggct
gtttgaatatttgggtttccagttgctgacacgtttaggagactggaggt
gtgggcttgctagggaaatatgtcactggggggtggttgggcttgaggcc
tcacagtctcctccaccactgttagattgctcttagtctgctgtgattta
gatgtgactcagtcgctgcttcagctccgggctctgctgcgatacttcag
ctggttggtaatggaaccgtttcctctctgggaacctttag
gaattctaagttcaaggccagcctaggacacatagtgagaccctgattca
aaacaaataataccaaaggaaaaacttggtcatctaatcctgccacttcc
ctggatgtttctatcttcaattatcatcctgacctagctgacttctacca
atgattagtcagttataggccaactccatgtaggtatttgaggtttcatt
ctctagcttaaacaatggctgctcttctgaccagtagcactaatatggaa
aatatacctgtcattaattgtaaaaatgcttgctgacatttactgcagtc
ttcccaagtccagtttgtatcaggtttacttttttattaataactgtcaa
aggacatcactttttcgtaggcatgttattattgtcaacaaatatgtcag
cagtcatactctcttgggcccaaatcaatcaacatcagacggcttaagga
cgtattctccatctaacttcgagtgctgcattgttaacgcaatgctgaaa
gacaacctctttctgaggtgcaaaaaagatgcttagactagaactcaact
ggttaaaaattacatcatattgcaatcacattggaagtaatgagtagaaa
gaagagacttagataggaaagcctttgttaaaacgtatcctgtctcatgt
catctaaccctgaggaaacaatataaaattaaataaacacatatcctcca
ccagctaatgaagttttatcctctcaggcttcagataaacagatcgctgt
tcataaattttgcaccttagaatcttccagctccagggctggagacccag
cttagctggtcgagagcttgtccattttgcatggaattcttggttgatag
atagcaccataagttggatgtggtggtcatgtaatcccaatcactccaaa
ggtgaagacagagaagagaagttcggggtcctcctctgctacatctaagg
ccagcttgtaatagatgatagatagatgtaatagtcctcgaaggaaaaca
aaaccaaaaccaaaccaaacaaaactctattttttactatccaccgcttt
ttttctattgtgtgggaaaaacctttttaatccttgcagaagttaattgt
ggttgaacatggctttctcaagcagggagccacctaagtaaattccaaag
gtgaatggcctccaaggaaaccaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_65052035_65053196
seq2: B6Ng01-086N21.g_68_1244

seq1  GAATTCTAAGTTCAAGGCCAGCCTAGGACACATAGTGAGACCCTGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTTCAAGGCCAGCCTAGGACACATAGTGAGACCCTGATTCA  50

seq1  AAACAAATAATACCAAAGGAAAAACTTGGTCATCTAATCCTGCCACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAATACCAAAGGAAAAACTTGGTCATCTAATCCTGCCACTTCC  100

seq1  CTGGATGTTTCTATCTTCAATTATCATCCTGACCTAGCTGACTTCTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTTTCTATCTTCAATTATCATCCTGACCTAGCTGACTTCTACCA  150

seq1  ATGATTAGTCAGTTATAGGCCAACTCCATGTAGGTATTTGAGGTTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGTCAGTTATAGGCCAACTCCATGTAGGTATTTGAGGTTTCATT  200

seq1  CTCTAGCTTAAACAATGGCTGCTCTTCTGACCAGTAGCACTAATATGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTTAAACAATGGCTGCTCTTCTGACCAGTAGCACTAATATGGAA  250

seq1  AATATACCTGTCATTAATTGTAAAAATGCTTGCTGACATTTACTGCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCTGTCATTAATTGTAAAAATGCTTGCTGACATTTACTGCAGTC  300

seq1  TTCCCAAGTCCAGTTTGTATCAGGTTTACTTTTTTATTAATAACTGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTCCAGTTTGTATCAGGTTTACTTTTTTATTAATAACTGTCAA  350

seq1  AGGACATCACTTTTTCGTAGGCATGTTATTATTGTCAACAAATATGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCACTTTTTCGTAGGCATGTTATTATTGTCAACAAATATGTCAG  400

seq1  CAGTCATACTCTCTTGGGCCCAAATCAATCAACATCAGACGGCTTAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATACTCTCTTGGGCCCAAATCAATCAACATCAGACGGCTTAAGGA  450

seq1  CGTATTCTCCATCTAACTTCGAGTGCTGCATTGTTAACGCAATGCTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTCTCCATCTAACTTCGAGTGCTGCATTGTTAACGCAATGCTGAAA  500

seq1  GACAACCTCTTTCTGAGGTGCAAAAAAGATGCTTAGACTAGAACTCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTCTTTCTGAGGTGCAAAAAAGATGCTTAGACTAGAACTCAACT  550

seq1  GGTTAAAAATTACATCATATTGCAATCACATTGGAAGTAATGAGTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAATTACATCATATTGCAATCACATTGGAAGTAATGAGTAGAAA  600

seq1  GAAGAGACTTAGATAGGAAAGCCTTTGTTAAAACGTATCCTGTCTCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACTTAGATAGGAAAGCCTTTGTTAAAACGTATCCTGTCTCATGT  650

seq1  CATCTAACCCTGAGGAAACAATATAAAATTAAATAAACACATATCCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAACCCTGAGGAAACAATATAAAATTAAATAAACACATATCCTCCA  700

seq1  CCAGCTAATGAAGTTTTATCCTCTCAGGCTTCAGATAAACAGATCGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAATGAAGTTTTATCCTCTCAGGCTTCAGATAAACAGATCGCTGT  750

seq1  TCATAAATTTTGCACCTTAGAATCTTCCAGCTCCAGGGCTGGAGACCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTTTGCACCTTAGAATCTTCCAGCTCCAGGGCTGGAGACCCAG  800

seq1  CTTAGCTGGTCGAGAGCTTGTCCATTTTGCATGGAATTCTTGGTTGATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGGTCGAGAGCTTGTCCATTTTGCATGGAATTCTTGGTTGATAG  850

seq1  ATAGCACCATAAGTTGGATGTGGTGGTCATGTAATCCCAATCACTCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACCATAAGTTGGATGTGGTGGTCATGTAATCCCAATCACTCCAAA  900

seq1  GGTGAAGACAAGAGAAGAGAAGTTCGGGGTCCTCCTCTGCTACATCTAAG  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAC-AGAGAAGAGAAGTTCGGGGTCCTCCTCTGCTACATCTAAG  949

seq1  GCCAGCTTGTAATAGATGATAGATAGATGTAATAGT-CTCGAAAGAAAAC  999
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GCCAGCTTGTAATAGATGATAGATAGATGTAATAGTCCTCGAAGGAAAAC  999

seq1  AAAA-CAAAACAAAACAAAACAAAACTCTA--TTTTACTA-CCACCGC--  1043
      |||| |||||| |||| |||||||||||||  |||||||| |||||||  
seq2  AAAACCAAAACCAAACCAAACAAAACTCTATTTTTTACTATCCACCGCTT  1049

seq1  TTTTTCTAT--TGTTGGAAATAC--TTTTAAACCCTGCAAGAGTTAATTG  1089
      |||||||||  ||| ||||| ||  |||||| || ||||  |||||||||
seq2  TTTTTCTATTGTGTGGGAAAAACCTTTTTAATCCTTGCAGAAGTTAATTG  1099

seq1  TG--TG-ACATG--CTTCTC-AGCAGGGAGCCACCCAAGTAAAAATCCAA  1133
      ||  || |||||   ||||| |||||||||||||| |||||||   | ||
seq2  TGGTTGAACATGGCTTTCTCAAGCAGGGAGCCACCTAAGTAAATTCCAAA  1149

seq1  GGTG-ATGGCTTCACAAGGAGACACAGGAA  1162
      |||| ||||| || |||||| || ||||||
seq2  GGTGAATGGCCTC-CAAGGAAAC-CAGGAA  1177