BAC Information

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BAC

Clone NameB6Ng01-087A10
Chromosome5 (Build37)
Map Location 86,078,171 - 86,079,272
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087A10.bB6Ng01-087A10.g
ACCDH900267DH900268
length1,2861,099
definitionDH900267|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A10, 5' end.DH900268|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacctgacagctgagaagcacctgaaaaatgt
tcaatatccttaatcatcagggaaatgcaaatcaaaacaaccttgagatt
ccacctcacaccatcagaataactaggatcaaaaattcaggtgacagcag
atgctggtgaggatgtggagaaagaggaatactcctccattgctggtggg
attgcaagctggtacaagcactctggaaatcagtttcgtatttcctcaga
aaactggacatagtattaccgctagatccagcaatacttctcctgggtat
atacccagaagatgttccaactggtaataaggacacatgcttcactatgt
tcatagcaaccctatttataatagccagaagctggaaagaacccagatat
tcctcaacagaggaatggatgcagaaaatgtggtacaattacacaatgga
gtattactcagctattaaaaataatgaatttggggactcagcagaactta
ggaaattagtctgaacaggttagagggtgcgccagagaaccggacagctt
ctgggacgggcagaagcacagagcccctgaggcagcacccttggcgggcc
acagacagccagccactgtccggaccagaggacaggtgtcctcctggctc
gggaggcggcctcagcctcaggagcagaggtcgccatcttggttccagga
ctccctggaacttaggaatttagtctgcacaggtgagagtctgcaccaca
gaagctgacagcttctgggaactgccaaagcaacacagcttctgagagag
gccctgttttggaccttcttcttcgaccaggaggaggtccaaaaacaaga
tatctgcgcaccttccctgtaagagagcttgccagcagagaatgctctga
gcactgaaactcagaggaaaaatctgtttcccaggtctgctgagagacgg
taacagaatcaccagaagaacatctctaaacagagtcactataactacta
actccagagataccagatggcgaaaggtaaacgtaggaatcctactaaca
ggaggagaccactcaccatcatcagacccagcacttcccactttcgtcag
ttcaggcaccccacacacccgaaaacctagaactagatttaaagcatatc
ctcatgatgaatgttagagaactcagaggactttataattaccttaagga
aataggaacctgctaagagtcaagtcctaaagaaaacggggaaacacact
attaacacgggtatgagagtctcttctatgcgggat
gaattccacagtgcattaggtataatttaatatatacatgaacatatatg
tatgtgtatatctatgtgtatatgtatataaacatagaatcttctcaatt
ttatagagtaggagacatcacacacacggagttacttatggaggataacg
caattatttacacagcagggaattgactgccattcagtacgacccaagag
cacatttcctgagacactaatctgcaatggcgctctgactagctttgctt
gattatgcccgtcaccgaaactatatattcatttgacactgacatgaatt
acctaactaaattcttactgctttgcacaattgtagtttgtgttctcaac
taactaaagaggttgtttgagacaaagctgtatgttatgttcctggtgca
tactatttccatgtatagcatgcctcttgcttatttctttaaggaaacgc
ttctggatccagacactactcagtcacatgtgggtgtatgcaatatatat
atatgtatgtatacacacacacacacacacacacacacacacacacacac
acacacacacacacatatatatatatatatatatatatatatatatgcgt
gcatgcatgcaagtacacacacacacacacacacacacacacacacatca
tataaattcatctccagactcttttgcaaacattattctgttttatgatt
tcatgactttgaatagctgatatactttaaggagagtcagatattttgtc
ttctgtcacgagacttttcacttttgaatgataatttcatgtcatcatga
tcaagatatcagtttcatgatgcttagattacttccacttcttacctgtt
gttttttttttttaaataccagttacttaagaaatgtgaatgtccctttt
ctgatatcaattaaatattttttgaataaacttttctgacagaagatttt
ctgtattcattataataacatttttcttttttttgaatacagggtttctt
gacatcaccacaaacatttatcatcattacagttttgttttgagtattgg
acatctcagtgacagaatgattcattttactttgactagcctttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86078171_86079272
seq2: B6Ng01-087A10.g_69_1167 (reverse)

seq1  AAAAAAAAGGCTAGTCAAAGTTAAAATGAACCATTCTGTCACATGAGGAT  50
      |||||||||||||||||||| ||||||||| ||||||||||| ||| |||
seq2  AAAAAAAAGGCTAGTCAAAG-TAAAATGAATCATTCTGTCAC-TGA-GAT  47

seq1  GTCCATTACTCAAAAACAAAACTGTAATGATGATAAATGTTTGTGGTGAT  100
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATACTC-AAAACAAAACTGTAATGATGATAAATGTTTGTGGTGAT  96

seq1  GTCAAGGAAACCTTTGTATTCAAAAAGAAAGAAAAATGTTATTATAATGA  150
      |||||| || ||  |||||||||||| |||||||||||||||||||||||
seq2  GTCAAGAAACCC--TGTATTCAAAAA-AAAGAAAAATGTTATTATAATGA  143

seq1  ATACAG-AAATCTCTTGTCAG-AAAGTTTATTCAAAAAATATATAAATTG  198
      |||||| ||||||  |||||| |||||||||||||||||||| | |||||
seq2  ATACAGAAAATCTTCTGTCAGAAAAGTTTATTCAAAAAATAT-TTAATTG  192

seq1  ATATCAG-AAAGGGACATTCACATTTCTAAGTTAACTGGTATTTAAAAAA  247
      ||||||| |||||||||||||||||||| |  ||||||||||||||||||
seq2  ATATCAGAAAAGGGACATTCACATTTCTTAAGTAACTGGTATTTAAAAAA  242

seq1  AAAAAACAACAGGTAAGAAGTGGAAGTAATCTAAGCATCATGAAACTGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAACAGGTAAGAAGTGGAAGTAATCTAAGCATCATGAAACTGAT  292

seq1  ATCATGATCATGATGACATGAAATTATCATTC-AAAGTGAAAAAGTCTCG  346
      ||| |||||||||||||||||||||||||||| |||||| ||||||||||
seq2  ATCTTGATCATGATGACATGAAATTATCATTCAAAAGTG-AAAAGTCTCG  341

seq1  TGACAGAAGAC-AAATATCTGACTCTCCTTAAAGTATATCAGCTATTCAA  395
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAGACAAAATATCTGACTCTCCTTAAAGTATATCAGCTATTCAA  391

seq1  AGTCATGAAATCATAAAACAGAATAATGTTTGC-AAAGAGTCTGGAGATG  444
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTCATGAAATCATAAAACAGAATAATGTTTGCAAAAGAGTCTGGAGATG  441

seq1  AATTTATATGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTGC  491

seq1  ATGCATGCACGCATATATATATATATATATATATATATATATATGTGTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCACGCATATATATATATATATATATATATATATATATGTGTGT  541

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAC  591

seq1  ATACATATATATATATTGCATACACCCACATGTGACTGAGTAGTGTCTGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATATATATATTGCATACACCCACATGTGACTGAGTAGTGTCTGG  641

seq1  ATCCAGAAGCGTTTCCTTAAAGAAATAAGCAAGAGGCATGCTATACATGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAAGCGTTTCCTTAAAGAAATAAGCAAGAGGCATGCTATACATGG  691

seq1  AAATAGTATGCACCAGGAACATAACATACAGCTTTGTCTCAAACAACCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTATGCACCAGGAACATAACATACAGCTTTGTCTCAAACAACCTC  741

seq1  TTTAGTTAGTTGAGAACACAAACTACAATTGTGCAAAGCAGTAAGAATTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAGTTGAGAACACAAACTACAATTGTGCAAAGCAGTAAGAATTT  791

seq1  AGTTAGGTAATTCATGTCAGTGTCAAATGAATATATAGTTTCGGTGACGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGTAATTCATGTCAGTGTCAAATGAATATATAGTTTCGGTGACGG  841

seq1  GCATAATCAAGCAAAGCTAGTCAGAGCGCCATTGCAGATTAGTGTCTCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATCAAGCAAAGCTAGTCAGAGCGCCATTGCAGATTAGTGTCTCAG  891

seq1  GAAATGTGCTCTTGGGTCGTACTGAATGGCAGTCAATTCCCTGCTGTGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGCTCTTGGGTCGTACTGAATGGCAGTCAATTCCCTGCTGTGTA  941

seq1  AATAATTGCGTTATCCTCCATAAGTAACTCCGTGTGTGTGATGTCTCCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGCGTTATCCTCCATAAGTAACTCCGTGTGTGTGATGTCTCCTA  991

seq1  CTCTATAAAATTGAGAAGATTCTATGTTTATATACATATACACATAGATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAAAATTGAGAAGATTCTATGTTTATATACATATACACATAGATA  1041

seq1  TACACATACATATATGTTCATGTATATATTAAATTATACCTAATGCACTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACATATATGTTCATGTATATATTAAATTATACCTAATGCACTG  1091

seq1  TGGAATTC  1102
      ||||||||
seq2  TGGAATTC  1099