BAC Information

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BAC

Clone NameB6Ng01-087A12
Chromosome9 (Build37)5 (Build37)
Map Location 55,158,444 - 55,158,710138,128,627 - 138,129,020
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4
Downstream geneAI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087A12.bB6Ng01-087A12.g
ACCDH900271DH900272
length267191
definitionDH900271|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A12, 5' end.DH900272|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,158,444 - 55,158,710)(138,128,627 - 138,129,020)
sequence
ctagtgcagatgaagggatcagggctgaaagatcctaatatggattatat
ttgggacagactgggcatggggaaagggatgtgtagctgctggcactgca
atccttattagctgccttgcaaaagaggaaagctgtcctctgaaggggtg
ggatggctttctctcttccttgagtttctggagcaagtgcatgatgggag
aatgtgtctggataaaaaggggtgtggatggaaagagatctttggaggag
gaaggagaggaggagaa
gaattcaggaggggggtggtggtgcatgcctttaatcccagcactcggga
ggcagaggcaggcagatttctgagtttgaggccagcctggtttacagagt
gagttccagggcagccagggctatacagagaaaccctgtctcgaaaaaca
aaaaaaaaaaaaaacaaaaccctgtctagaaaaaacaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_55158444_55158710
seq2: B6Ng01-087A12.b_51_317 (reverse)

seq1  TTCTCCTCCTCTCCTTCCTCCTCCAAAGATCTCTTTCCATCCACACCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCTCTCCTTCCTCCTCCAAAGATCTCTTTCCATCCACACCCCT  50

seq1  TTTTATCCAGACACATTCTCCCATCATGCACTTGCTCCAGAAACTCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCAGACACATTCTCCCATCATGCACTTGCTCCAGAAACTCAAGG  100

seq1  AAGAGAGAAAGCCATCCCACCCCTTCAGAGGACAGCTTTCCTCTTTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAAGCCATCCCACCCCTTCAGAGGACAGCTTTCCTCTTTTGCA  150

seq1  AGGCAGCTAATAAGGATTGCAGTGCCAGCAGCTACACATCCCTTTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTAATAAGGATTGCAGTGCCAGCAGCTACACATCCCTTTCCCCA  200

seq1  TGCCCAGTCTGTCCCAAATATAATCCATATTAGGATCTTTCAGCCCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTCTGTCCCAAATATAATCCATATTAGGATCTTTCAGCCCTGAT  250

seq1  CCCTTCATCTGCACTAG  267
      |||||||||||||||||
seq2  CCCTTCATCTGCACTAG  267

seq1: chr5_138128627_138129020
seq2: B6Ng01-087A12.g_84_259

seq1  GTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGG  50
      ||||||| |||||||||||||||||||||| ||||||||||||||||| |
seq2  GTGGTGGTGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAG  50

seq1  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  100
      ||||||||||| |||||||||||||| |||||||||||||||||| ||||
seq2  ATTTCTGAGTTTGAGGCCAGCCTGGTTTACAGAGTGAGTTCCAGGGCAGC  100

seq1  CAGGACTACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAGGCTGGA  150
      |||| ||| |||||||||||||||||||||||| |||||||||       
seq2  CAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAAAAAA-------  143

seq1  GAGATGGCTCAGCGGTTAAGAGCACCAGACTGCTCTTCCAAAGGTCCAGA  200
                       || | ||  |  ||| |||   |||     | |
seq2  ----------------AAAAAACAAAACCCTG-TCTAGAAAAAACAAAAA  176

seq1  GTTTAAATCCCAGCAACCACATGGTAGCTCAAAACCATCCATAACGAGAT  250
                                                        
seq2  --------------------------------------------------  176

seq1  CTGACGCCCTCTTCTGGTGTGTCTGAAGACAACTATGGTGTACTTACATA  300
                                                        
seq2  --------------------------------------------------  176

seq1  TAATAAATAATAAATAAATAAATAAATCTTTAAAAAAGAAAAACAAAAAA  350
                                                        
seq2  --------------------------------------------------  176

seq1  AAACAACCAAACAAAAAAAAAAAACAAAACCAACCAAACAAAAA  394
                                                  
seq2  --------------------------------------------  176