BAC Information

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BAC

Clone NameB6Ng01-087B12
Chromosome5 (Build37)
Map Location 123,889,694 - 124,041,038
singlet/doubletdoublet
Overlap geneMlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1
Upstream geneAnapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
Downstream geneZcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087B12.bB6Ng01-087B12.g
ACCDH900317DH900318
length1,1181,144
definitionDH900317|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B12, 5' end.DH900318|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,889,694 - 123,890,819)(124,039,869 - 124,041,038)
sequence
gaattcagtcctctgcctctacctcctgagtgtagggattaaagatgtgt
gctgccatgcctggcaacatagcttttcatgttgaattataagaaatttt
aagagtatgcaggttcccaaagaatacaggaaatacatgtctgatcaccc
tcttagcatgtcttctaagcccaaatattgtcacaccccactgtccccat
atgctctaaagaaatcccagaatgactgttctgtcaagcctggcctataa
atggttcaattcagggctctccagtctggaatgatttggtttgcatttta
ttttctgaagagccactgactctttctctctttctttgtcttgttttcca
gtgggaaattagtgtctccaaagtggaaaaatttcaagggcctgaagctc
cagtggcgggacaagatccggctcaacaacgccatctggagggcatggta
tatgcagtgtaagtgtgttgcctgccaggcagatggtgtgttatgctcca
agggacctcagttctgtggcatcagagcgctacatcttggagcatcttgg
gtccatagcctgctcttttcagtagaatctttcatacatagtctatgtga
tgagaaatcaagctacaacacatcccaggaagcagggcagtcaccagcca
tcaggcagtcacctaacagagagtcttgaagggcagacatgagagcctcc
ctgaccacaaatacatgctgggtacttggccctcaggtgtaatgggttct
ttttaggagagatgggagaatgtagccaagaggtgacatttgaagagcca
aagaacagtttctatttccagcagtttaagaagacatagacactgctgta
cagctcttgtccttggttaggttgagaataggaggatgcagcttcaggag
caggtgggctcttccacttattggctgcctttgtgtgatgagcactttat
ttcttactcagatatactgccattcgttgccttgggcctgcatgctttta
tttctcagactctacatttcttcagtggtagaagaaataacattccaggg
tgtagcagtttgggtagagctccatcaggatcttggtacagttatgatgt
ctctcttctctccaaccc
gaattctcgggcttatccagaaggggttaagccctcagatgtacgcaatg
tttaaaggagaagccaccctcttggtggtaacttcatgctaattcactgc
ttgagagacgagcagcggcatggagcagtggatctctgcagaaggccgtc
gactgaagcaactctctctgtttttgtttttcagctggaagaagaacgat
ctgtactcaataatcagttgttagaaatgaaaaagaggtaggctctctct
gtgtattgctgtgtgtgtttaacaaggaaagcttccgaatgtagtgtgtg
tgctagcttgtggaaaacagtcaacgccttttattcagacaatgacgtat
tttagtgctcgcaactggcaacctatgaaggtccatttgtgcaggtttca
gatatttaaaattttaagccattttcaattgtgtttactcagaagagctc
tatactcagattgcttcatactaatgctactgcccagtctgagaaatgaa
caatattacaattgcatttatactgtagatataaatactgatttcactta
taggaaagtttgatttttgtcagtagtaagtactttgtatctattattta
ttatctctccataacattatataattttccaactacttttgagtagaggt
aaacgtgggccataaaaattaaatatttaggccaggtcagggtaggatat
gccggcaattctaacactcaagaggccaaaactggagatttgaatccaac
ctgtgctatatagcaaaatccagttttaaaaaaataaaatagttgccggg
cgtggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcg
gatttctgagttcagggttaacctggtctacaaagtgagttccaggacag
ccaggctacacagagaaaccctgtctcaaataaataataaataaaataaa
tagagccaagaatagtgtgcacattttattcctaaactccggagagagca
ggtggatctctggttttggcagctgtctacgagtgagttcagatagccga
actacccgagaaaacttaccacaaacaacaactctcaccacaatacaatc
ttaaataaaagaagaaactgtccccaagtctgatgcctattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123889694_123890819
seq2: B6Ng01-087B12.b_48_1165

seq1  GAATTCAGTCCTCTGCCTCTACCTCCTGAGTGTAGGGATTAAAGATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTCTGCCTCTACCTCCTGAGTGTAGGGATTAAAGATGTGT  50

seq1  GCTGCCATGCCTGGCAACATAGCTTTTCATGTTGAATTATAAGAAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGCCTGGCAACATAGCTTTTCATGTTGAATTATAAGAAATTTT  100

seq1  AAGAGTATGCAGGTTCCCAAAGAATACAGGAAATACATGTCTGATCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATGCAGGTTCCCAAAGAATACAGGAAATACATGTCTGATCACCC  150

seq1  TCTTAGCATGTCTTCTAAGCCCAAATATTGTCACACCCCACTGTCCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATGTCTTCTAAGCCCAAATATTGTCACACCCCACTGTCCCCAT  200

seq1  ATGCTCTAAAGAAATCCCAGAATGACTGTTCTGTCAAGCCTGGCCTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTAAAGAAATCCCAGAATGACTGTTCTGTCAAGCCTGGCCTATAA  250

seq1  ATGGTTCAATTCAGGGCTCTCCAGTCTGGAATGATTTGGTTTGCATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAATTCAGGGCTCTCCAGTCTGGAATGATTTGGTTTGCATTTTA  300

seq1  TTTTCTGAAGAGCCACTGACTCTTTCTCTCTTTCTTTGTCTTGTTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAGAGCCACTGACTCTTTCTCTCTTTCTTTGTCTTGTTTTCCA  350

seq1  GTGGGAAATTAGTGTCTCCAAAGTGGAAAAATTTCAAGGGCCTGAAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAATTAGTGTCTCCAAAGTGGAAAAATTTCAAGGGCCTGAAGCTC  400

seq1  CAGTGGCGGGACAAGATCCGGCTCAACAACGCCATCTGGAGGGCATGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCGGGACAAGATCCGGCTCAACAACGCCATCTGGAGGGCATGGTA  450

seq1  TATGCAGTGTAAGTGTGTTGCCTGCCAGGCAGATGGTGTGTTATGCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTGTAAGTGTGTTGCCTGCCAGGCAGATGGTGTGTTATGCTCCA  500

seq1  AGGGACCTCAGTTCTGTGGCATCAGAGCGCTACATCTTGGAGCATCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCTCAGTTCTGTGGCATCAGAGCGCTACATCTTGGAGCATCTTGG  550

seq1  GTCCATAGCCTGCTCTTTTCAGTAGAATCTTTCATACATAGTCTATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAGCCTGCTCTTTTCAGTAGAATCTTTCATACATAGTCTATGTGA  600

seq1  TGAGAAATCAAGCTACAACACATCCCAGGAAGCAGGGCAGTCACCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATCAAGCTACAACACATCCCAGGAAGCAGGGCAGTCACCAGCCA  650

seq1  TCAGGCAGTCACCTAACAGAGAGTCTTGAAGGGCAGACATGAGAGCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGTCACCTAACAGAGAGTCTTGAAGGGCAGACATGAGAGCCTCC  700

seq1  CTGACCACAAATACATGCTGGGTACTTGGCCCTCAGGTGTAATGGGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACAAATACATGCTGGGTACTTGGCCCTCAGGTGTAATGGGTTCT  750

seq1  TTTTAGGAGAGATGGGAGAATGTAGCCAAGAGGTGACATTTGAAGAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAGAGATGGGAGAATGTAGCCAAGAGGTGACATTTGAAGAGCCA  800

seq1  AAGAACAGTTTCTATTTCCAGCAGTTTAAGAAGACATAGACACTGCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGTTTCTATTTCCAGCAGTTTAAGAAGACATAGACACTGCTGTA  850

seq1  CAGCTCTTGTCCTTGGTTAGGTTGAGAATAGGAGGATGCAGGCTTCAGGA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGCTCTTGTCCTTGGTTAGGTTGAGAATAGGAGGATGCA-GCTTCAGGA  899

seq1  GCAGGGTGGGCTCTTCCCACTTATTGGCTGCCTTTGTGTTGATGAGCAAC  950
      ||| ||||||||||| |||||||||||||||||||||| |||||||| ||
seq2  GCA-GGTGGGCTCTT-CCACTTATTGGCTGCCTTTGTG-TGATGAGC-AC  945

seq1  TTTATTTCTTACTCAGATATTACTGCCATTCGTTGCCTTGGGCCTGCATG  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTATTTCTTACTCAGATA-TACTGCCATTCGTTGCCTTGGGCCTGCATG  994

seq1  CTTTTATTTCTCAGAACTCTACATTTCTCCAGTGGTAGAAGGAAATAACA  1050
      |||||||||||||| ||||||||||||| ||||||||||| |||||||||
seq2  CTTTTATTTCTCAG-ACTCTACATTTCTTCAGTGGTAGAA-GAAATAACA  1042

seq1  TTCCAGGGTGTAGCAGTTTGGGTAGAGCTCCATCAGGGATCTTGGTACAG  1100
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCCAGGGTGTAGCAGTTTGGGTAGAGCTCCATCA-GGATCTTGGTACAG  1091

seq1  TTATGATGTCTCTCTTCTC-CCAACCC  1126
      ||||||||||||||||||| |||||||
seq2  TTATGATGTCTCTCTTCTCTCCAACCC  1118

seq1: chr5_124039869_124041038
seq2: B6Ng01-087B12.g_70_1213 (reverse)

seq1  TATAA---GCATCAGACTTTGGGGTATGAGTTTCTTTCCTTTTTATTTTA  47
      |||||   ||||||||||| |||     ||||||||    |||||||| |
seq2  TATAATAGGCATCAGACTTGGGG---ACAGTTTCTT---CTTTTATTTAA  44

seq1  GGTTTTGTATTGTGGTGGTGGTTGTTGTTTGTGGTAGGTTTTTCTCTGTG  97
      |   |||||||||||||   |||||||||||||||| | ||||||| | |
seq2  G--ATTGTATTGTGGTGAGAGTTGTTGTTTGTGGTAAG-TTTTCTC-GGG  90

seq1  TAGTTCTGGCTATTCTGGAACTCACTCTGTAGACCAGGCTGGCCCCAAAA  147
      |||||| ||||| ||| |||||||||| ||||||   ||||    | |||
seq2  TAGTTC-GGCTA-TCT-GAACTCACTC-GTAGAC--AGCTG----CCAAA  130

seq1  ACCAGAGATCCACCTGCTTCTTCCTCCGGAGTTTTAGGAATAAAATGTGC  197
      ||||||||||||||||| |||  |||||||| ||||||||||||||||||
seq2  ACCAGAGATCCACCTGC-TCT--CTCCGGAG-TTTAGGAATAAAATGTGC  176

seq1  ACCACTATTCTTGGCTTCTATTTTATTTTATTTATTTATTTATTTGAGAC  247
      | ||||||||||||| |||| ||||||||||||| |||||||||||||||
seq2  A-CACTATTCTTGGC-TCTA-TTTATTTTATTTA-TTATTTATTTGAGAC  222

seq1  AGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  297
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTGTAG-CCTGGCTGTCCTGGAACTCACTTTGTAGACCA  271

seq1  GGTTAACCCTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACCCTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGG  321

seq1  GATTAAAGGCATGTGCCACCACGCCCGGCAACTATTTTATTTTTTTAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGTGCCACCACGCCCGGCAACTATTTTATTTTTTTAAAA  371

seq1  CTGGATTTTGCTATATAGCACAGGTTGGATTCAAATCTCCAGTTTTGGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTTGCTATATAGCACAGGTTGGATTCAAATCTCCAGTTTTGGCC  421

seq1  TCTTGAGTGTTAGAATTGCCGGCATATCCTACCCTGACCTGGCCTAAATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGTTAGAATTGCCGGCATATCCTACCCTGACCTGGCCTAAATA  471

seq1  TTTAATTTTTATGGCCCACGTTTACCTCTACTCAAAAGTAGTTGGAAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTATGGCCCACGTTTACCTCTACTCAAAAGTAGTTGGAAAAT  521

seq1  TATATAATGTTATGGAGAGATAATAAATAATAGATACAAAGTACTTACTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATGTTATGGAGAGATAATAAATAATAGATACAAAGTACTTACTA  571

seq1  CTGACAAAAATCAAACTTTCCTATAAGTGAAATCAGTATTTATATCTACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAAATCAAACTTTCCTATAAGTGAAATCAGTATTTATATCTACA  621

seq1  GTATAAATGCAATTGTAATATTGTTCATTTCTCAGACTGGGCAGTAGCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATGCAATTGTAATATTGTTCATTTCTCAGACTGGGCAGTAGCAT  671

seq1  TAGTATGAAGCAATCTGAGTATAGAGCTCTTCTGAGTAAACACAATTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGAAGCAATCTGAGTATAGAGCTCTTCTGAGTAAACACAATTGAA  721

seq1  AATGGCTTAAAATTTTAAATATCTGAAACCTGCACAAATGGACCTTCATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTAAAATTTTAAATATCTGAAACCTGCACAAATGGACCTTCATA  771

seq1  GGTTGCCAGTTGCGAGCACTAAAATACGTCATTGTCTGAATAAAAGGCGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCAGTTGCGAGCACTAAAATACGTCATTGTCTGAATAAAAGGCGT  821

seq1  TGACTGTTTTCCACAAGCTAGCACACACACTACATTCGGAAGCTTTCCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTTCCACAAGCTAGCACACACACTACATTCGGAAGCTTTCCTT  871

seq1  GTTAAACACACACAGCAATACACAGAGAGAGCCTACCTCTTTTTCATTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACACACACAGCAATACACAGAGAGAGCCTACCTCTTTTTCATTTC  921

seq1  TAACAACTGATTATTGAGTACAGATCGTTCTTCTTCCAGCTGAAAAACAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTGATTATTGAGTACAGATCGTTCTTCTTCCAGCTGAAAAACAA  971

seq1  AAACAGAGAGAGTTGCTTCAGTCGACGGCCTTCTGCAGAGATCCACTGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAGAGTTGCTTCAGTCGACGGCCTTCTGCAGAGATCCACTGCT  1021

seq1  CCATGCCGCTGCTCGTCTCTCAAGCAGTGAATTAGCATGAAGTTACCACC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCGCTGCTCGTCTCTCAAGCAGTGAATTAGCATGAAGTTACCACC  1071

seq1  AAGAGGGTGGCTTCTCCTTTAAACATTGCGTACATCTGAGGGCTTAACCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTGGCTTCTCCTTTAAACATTGCGTACATCTGAGGGCTTAACCC  1121

seq1  CTTCTGGATAAGCCCGAGAATTC  1170
      |||||||||||||||||||||||
seq2  CTTCTGGATAAGCCCGAGAATTC  1144