BAC Information

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BAC

Clone NameB6Ng01-087F06
Chromosome5 (Build37)
Map Location 15,148,538 - 15,149,654
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087F06.bB6Ng01-087F06.g
ACCDH900484DH900485
length1,2791,110
definitionDH900484|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F06, 5' end.DH900485|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcatgggcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgataaataag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccatgaaggaagtggtccaacgtagtcaacctgccacca
ggttgctggatggtcacctcgaggaatggtgccatatctgggactcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatgaccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagatatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgaataatcttacatctggccacttcttcttacaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcctttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcacttct
gggtggtgcctgcataacgtgcagagccatcagtaaaccaggctctagtc
ttttctcttcggtcagttgatcatagggaacaccccatgagctataggcg
catgcttggcagcagatggcattgtaacagagtagaaaccataggcattt
gagcaacttctcatgtaacttgcttgtgccttcaggactgctctggcccg
atcacgtaaataccactttcaatttgataatagactgctgccggggcgtg
tccaccttttgacttgcaggtctgaaagtacccagcctcatgaatgggta
gttcaaggtcgcaagagaaacttgggttctattgtccaacgttcagttct
cttaggcaatgcagtcagacgtttcatggaaagttgtctctgcagataag
gtgtaaagactgttgcttcccaaatatct

gaattcacatggaattagatttttcaaatttttcattttattaaaaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagtactctggaaattctatgatggtgctaacaatttcaggaatttcc
aacaggacacataacaagaaaaatccatatagtacaagtctttggtgtta
gctgaattttcaaatcagaaagcaaagagaagaatttacattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
ggtacagcaggatattaggccatgcaactgtatagggagatacagaagct
acatagtacttcaagtgttgctatcatatatgtctaagtgacattttaca
gattaatgccaagtgaaatcaaaatatagtcccctacccattacatctta
aaacacaatgatctatcaacagttgccatttcacagcaaaaagaaagcag
taggtataaattgaacacagaactgcttctcttgtaagaaatgaacacag
atatatagaacatgtatacttatacattctctttgaaattcaaggtggtt
aatttgctttactaccatataaaaacaatctcgctgtggtcaggaaaaaa
agctcattttccatgtttaaaaagtacattggctgggtgtggtggtgcac
gcctttaatcccagctctggggaagcagaggcaagcagatttctgagttg
gaggccagcctggtctacaaagtgagttccaggacagccagggctataca
gagaaagcctgtctagaaaaaccaaaacaaagtacaaattgtctctggca
aggaatacatccatagaccactttagacctatgtgatttggctagaatgc
ggacattccctaattacacacctttaataccaaacaatgaaagtaacgtt
catttaaagaagaagaagtcatgtttgtaagtgacatctaattgagggca
aagtgatgaatcagagagatacagaatgagtcgaaataggattatgctca
tcttatgagacagcgagaagaatgacttaaggaagttggggagggagggc
agataacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15148538_15149654
seq2: B6Ng01-087F06.g_71_1180

seq1  GAATTCACATGGAATTAGATTTTTCAAATTTTTCAATTTATTAAAAAATA  50
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAAAAGA  50

seq1  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100

seq1  TCAAGTACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150

seq1  AACAGGACACATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTA  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACAGGACACATAACAAGAAAAATCCATATAGTACAAGTCTTTGGTGTTA  200

seq1  GCTGAATTTTCAAATCAGAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTTTCAAATCAGAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250

seq1  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300

seq1  GGTACAGCAGGATATTAGCCCATGCAATTGTATAGAGAGATACAGAAGCT  350
      |||||||||||||||||| |||||||| ||||||| ||||||||||||||
seq2  GGTACAGCAGGATATTAGGCCATGCAACTGTATAGGGAGATACAGAAGCT  350

seq1  ACATAGTACTTCAAGTGTTGCTATCATATATGTCTAAGTGACATTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTACTTCAAGTGTTGCTATCATATATGTCTAAGTGACATTTTACA  400

seq1  GATTAATGCCAAGTAAAATAAAAATATAGTCCCCTACCCATTACATCTTA  450
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  GATTAATGCCAAGTGAAATCAAAATATAGTCCCCTACCCATTACATCTTA  450

seq1  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAAAAAGAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAAAAAGAAAGCAG  500

seq1  TAGGTATAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACAG  550

seq1  ATATATAGATACATGTATACTTATACATTCTCTTTGAAATTC-AGGTGGT  599
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  ATATATAGA-ACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGGT  599

seq1  TAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGAAAAA  649

seq1  AAGCTCATTTTCCACATTTAAAAAGTACATTGGCCGGGTGTGGTGGCACA  699
      ||||||||||||||  |||||||||||||||||| |||||||||||  ||
seq2  AAGCTCATTTTCCATGTTTAAAAAGTACATTGGCTGGGTGTGGTGGTGCA  699

seq1  CGCCTTTAATCCCAGCTCTGGGGAGGCAGAGGCAAGCAGATTTCTGAGTT  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGCCTTTAATCCCAGCTCTGGGGAAGCAGAGGCAAGCAGATTTCTGAGTT  749

seq1  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAC  799

seq1  AGAGAAAGCCTGTCTAGAAAAACCAAAACAAAGTACAAATTGTCTCTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCCTGTCTAGAAAAACCAAAACAAAGTACAAATTGTCTCTGGC  849

seq1  AAGGAATACATCCATAGACCAC-TTAGACCTATGTGATTTGGCTAGAATG  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGAATACATCCATAGACCACTTTAGACCTATGTGATTTGGCTAGAATG  899

seq1  CAGACATTCCCTAATTACACACCTTTAATCCCAAACAATGAAAGTAACGT  948
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CGGACATTCCCTAATTACACACCTTTAATACCAAACAATGAAAGTAACGT  949

seq1  TCATTTATAGAAGGAAGAGTCATGTTTGTAAGTGACATCTAATTGAGGGG  998
      ||||||| ||||| |  ||||||||||||||||||||||||||||| |||
seq2  TCATTTAAAGAAGAAGAAGTCATGTTTGTAAGTGACATCTAATTGA-GGG  998

seq1  CAAAGTGATGAATCAGAGAGATAACAGAATGAGTCAGAGATAGGA-TATG  1047
      |||||||||||||||||||||| |||||||||||| || |||||| ||||
seq2  CAAAGTGATGAATCAGAGAGAT-ACAGAATGAGTC-GAAATAGGATTATG  1046

seq1  CCCAATTCTTATGAGGACAGCGAGGAAAGAAAGGACTTAAGAGAGTTGGG  1097
      | ||  |||||||| |||||||||  ||| || ||||||||  |||||||
seq2  CTCA--TCTTATGA-GACAGCGAG--AAG-AATGACTTAAGGAAGTTGGG  1090

seq1  GAGGGAGGGCAGATTACAGA  1117
      |||||||||||||| |||||
seq2  GAGGGAGGGCAGATAACAGA  1110


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