BAC Information

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BAC

Clone NameB6Ng01-087F10
Chromosome5 (Build37)
Map Location 18,103,304 - 18,232,102
singlet/doubletdoublet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087F10.bB6Ng01-087F10.g
ACCDH900492DH900493
length1,0181,074
definitionDH900492|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F10, 5' end.DH900493|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,231,551 - 18,232,102)(18,103,304 - 18,104,379)
sequence
gaattctttctttatgatgataatttattttttcttttttttccttcttt
ttccttttctttataatccagccattgccccacccccaggtcctcatcct
attcctcctcccctgccagagaggatgctcccccaccaccgtacctccat
cctccctggggcctcaaatctttcaaggattaggtacatcttctcccact
gagggcagactaggaaatcctctgttatttgtgtgacagggcctcagacc
atcttgtgtatgctgtctggttggtggctcagtgtctggcagctcccatg
ggttcaggttaattgagactgtggaaatcctatggggttgccctcatctt
ctgcttcttccatccttcccctaattcgaccataggggatggttggctgt
aagtatctgtgtctgtttcattcagctgctatttgggcctctcaaaggac
aaccatgccaggctcttttctataagtacatcatagcatcagtaattgtc
tcagaccttggtgtctccccatgaggtggatcctcagttgggcaggtcac
tggaatgcctttttctcagtttcgattccacttttgtccctgtaggatag
aacaaaacagttctgggtcagaaattttgactgtgggttttaacaccatc
cctccttttgaggtcctgcctatctactggaggtggattcttagagtttc
ctctccctattgtagagcatttcatctaaggtcacttccattgagtcttg
agactctctcccaggtctctggtactttctatagggtctccgcacctcca
accttctgaggatgcatatttccattcattctgctagtcctctggacttc
tctcctgctctccccgatcttgtttctcttttcctcaacctcctcccctg
tcccacacaaatccctccctctctgtgtctcctgtaattattttcatctt
catactaaatgggatgaagcatcctcactggcctttctgctagtaaaatt
cttaaatctgtggattct
gaattccttgcgagcatgcccactcatttagcttttcttgaattttagat
gtagtcaagttgacaaaaagaacagctatcacggacatgaaggaaatcag
aaacaagagtaatacaaatttcaaagcaaaattaagatgtcttggcaggt
tttatggggtttggtgatgttactctgacatctgaagggttaagcacccc
tctttgaagtaggaaataggttggtgggaagggattacttcctaagcctg
cttagctgcctacacttttacttgggaagcttgtagattagaatgacata
ttttgggggaggtaagtggagctcagcttgcctgatgaagacaagcttca
ggacaaagttaagagcgaatagcttcctgttttagctttctatttttgtg
agaaaattcctgaggaagcaacatgaaagaaggaaaatttgactgtggtc
acatctctgagaagcagaggtgagaccagatattaaagcaaggagcacat
gatacagcagactgcagagatcatagcagacaggaagtagagaaaggaca
aacaagagcaaggacaaagcatatccttcaaatacaagtcttacacatct
tctcccaagcaagtcactgcctattttcccttcttcccaatgacatcaag
ggctaacagccaaatcttcaaaacatgcaactttctgagaatattcagac
ccaaaccataatacctcccaaatgtggaaataggcccagaatcgaccagt
ttcagattggttccgacatagatgtctaagtcctccatcaaagtatggtt
gttttgacagtagctgtaacaaatcatgcaaagtggtagttaccatgaga
agtgtgtaaaagagcaggatataacaggcagggagcaaatagacatgcac
acattcactgtacagctctgcagcaaaccatgaagtctgcagaagaatct
ttgcagagggataccttaatagctaatatcatggtgtctgcatttagctc
acagactttcttttatatatctttcagtgatgaaaattatattttgctaa
aatacttaaaatatttgatcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18231551_18232102
seq2: B6Ng01-087F10.b_44_595 (reverse)

seq1  CAGTGACCTGCCCAACTGAGGATCCACCTCATGGGGAGACACCAAGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCTGCCCAACTGAGGATCCACCTCATGGGGAGACACCAAGGTCT  50

seq1  GAGACAATTACTGATGCTATGATGTACTTATAGAAAAGAGCCTGGCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATTACTGATGCTATGATGTACTTATAGAAAAGAGCCTGGCATGG  100

seq1  TTGTCCTTTGAGAGGCCCAAATAGCAGCTGAATGAAACAGACACAGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTGAGAGGCCCAAATAGCAGCTGAATGAAACAGACACAGATAC  150

seq1  TTACAGCCAACCATCCCCTATGGTCGAATTAGGGGAAGGATGGAAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCCAACCATCCCCTATGGTCGAATTAGGGGAAGGATGGAAGAAGC  200

seq1  AGAAGATGAGGGCAACCCCATAGGATTTCCACAGTCTCAATTAACCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGAGGGCAACCCCATAGGATTTCCACAGTCTCAATTAACCTGAA  250

seq1  CCCATGGGAGCTGCCAGACACTGAGCCACCAACCAGACAGCATACACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGAGCTGCCAGACACTGAGCCACCAACCAGACAGCATACACAAG  300

seq1  ATGGTCTGAGGCCCTGTCACACAAATAACAGAGGATTTCCTAGTCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTGAGGCCCTGTCACACAAATAACAGAGGATTTCCTAGTCTGCCC  350

seq1  TCAGTGGGAGAAGATGTACCTAATCCTTGAAAGATTTGAGGCCCCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGAGAAGATGTACCTAATCCTTGAAAGATTTGAGGCCCCAGGGA  400

seq1  GGATGGAGGTACGGTGGTGGGGGAGCATCCTCTCTGGCAGGGGAGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGGTACGGTGGTGGGGGAGCATCCTCTCTGGCAGGGGAGGAGGA  450

seq1  ATAGGATGAGGACCTGGGGGTGGGGCAATGGCTGGATTATAAAGAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGAGGACCTGGGGGTGGGGCAATGGCTGGATTATAAAGAAAAGG  500

seq1  AAAAAGAAGGAAAAAAAAGAAAAAATAAATTATCATCATAAAGAAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGGAAAAAAAAGAAAAAATAAATTATCATCATAAAGAAAGAAT  550

seq1  TC  552
      ||
seq2  TC  552

seq1: chr5_18103304_18104379
seq2: B6Ng01-087F10.g_70_1143

seq1  GAATTCCTTGCGAGCATGCCCACTCATTTAGCTTTTCTTGAATTTTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCGAGCATGCCCACTCATTTAGCTTTTCTTGAATTTTAGAT  50

seq1  GTAGTCAAGTTGACAAAAAGAACAGCTATCACGGACATGAAGGAAATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCAAGTTGACAAAAAGAACAGCTATCACGGACATGAAGGAAATCAG  100

seq1  AAACAAGAGTAATACAAATTTCAAAGCAAAATTAAGATGTCTTGGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGTAATACAAATTTCAAAGCAAAATTAAGATGTCTTGGCAGGT  150

seq1  TTTATGGGGTTTGGTGATGTTACTCTGACATCTGAAGGGTTAAGCACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGGTTTGGTGATGTTACTCTGACATCTGAAGGGTTAAGCACCCC  200

seq1  TCTTTGAAGTAGGAAATAGGTTGGTGGGAAGGGATTACTTCCTAAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGTAGGAAATAGGTTGGTGGGAAGGGATTACTTCCTAAGCCTG  250

seq1  CTTAGCTGCCTACACTTTTACTTGGGAAGCTTGTAGATTAGAATGACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGCCTACACTTTTACTTGGGAAGCTTGTAGATTAGAATGACATA  300

seq1  TTTTGGGGGAGGTAAGTGGAGCTCAGCTTGCCTGATGAAGACAAGCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGGAGGTAAGTGGAGCTCAGCTTGCCTGATGAAGACAAGCTTCA  350

seq1  GGACAAAGTTAAGAGCGAATAGCTTCCTGTTTTAGCTTTCTATTTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGTTAAGAGCGAATAGCTTCCTGTTTTAGCTTTCTATTTTTGTG  400

seq1  AGAAAATTCCTGAGGAAGCAACATGAAAGAAGGAAAATTTGACTGTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCCTGAGGAAGCAACATGAAAGAAGGAAAATTTGACTGTGGTC  450

seq1  ACATCTCTGAGAAGCAGAGGTGAGACCAGATATTAAAGCAAGGAGCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGAGAAGCAGAGGTGAGACCAGATATTAAAGCAAGGAGCACAT  500

seq1  GATACAGCAGACTGCAGAGATCATAGCAGACAGGAAGTAGAGAAAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGCAGACTGCAGAGATCATAGCAGACAGGAAGTAGAGAAAGGACA  550

seq1  AACAAGAGCAAGGACAAAGCATATCCTTCAAATACAAGTCTTACACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGCAAGGACAAAGCATATCCTTCAAATACAAGTCTTACACATCT  600

seq1  TCTCCCAAGCAAGTCACTGCCTATTTTCCCTTCTTCCCAATGACATCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAGCAAGTCACTGCCTATTTTCCCTTCTTCCCAATGACATCAAG  650

seq1  GGCTAACAGCCAAATCTTCAAAACATGCAAC-TTCTGAGAATATTCAGAC  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTAACAGCCAAATCTTCAAAACATGCAACTTTCTGAGAATATTCAGAC  700

seq1  CCAAACCATAATACCTCCCAAATGTGGAAATAGGCCCAGAATCGACCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCATAATACCTCCCAAATGTGGAAATAGGCCCAGAATCGACCAGT  750

seq1  TTCAGATTGGTTCCGACATAGATGTCTAAGTCCTCCATCAAAGTATGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTGGTTCCGACATAGATGTCTAAGTCCTCCATCAAAGTATGGTT  800

seq1  GTTTTGACAGTAGCTGTAACAAATCATGCAAAGTGGTAGTTACCATGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACAGTAGCTGTAACAAATCATGCAAAGTGGTAGTTACCATGAGA  850

seq1  AGTGTGTTAAAAGAGCAGGATATAACAGGCAGGGAGCAAATAGACATGCA  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTG-TAAAAGAGCAGGATATAACAGGCAGGGAGCAAATAGACATGCA  899

seq1  CACA-TCACTGTAACAGCTCTGCAAGCAAAACCATGAAGTCTGCAG-AGA  947
      |||| ||||||| |||||||||| ||| |||||||||||||||||| |||
seq2  CACATTCACTGT-ACAGCTCTGC-AGC-AAACCATGAAGTCTGCAGAAGA  946

seq1  ATC-TTGCAGA-GGATACCTTAATAGCTAATATCAT-GTGTACTGCATTT  994
      ||| ||||||| |||||||||||||||||||||||| |||| ||||||||
seq2  ATCTTTGCAGAGGGATACCTTAATAGCTAATATCATGGTGT-CTGCATTT  995

seq1  AGCTCACAGACTTTCTTTTATATAATCTTTTCAGTGATGAAAATTATATT  1044
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  AGCTCACAGACTTTCTTTTATAT-ATC-TTTCAGTGATGAAAATTATATT  1043

seq1  TTGCTTAAAATAACTAAAATATTTGATCATGT  1076
      |||| |||||||  ||||||||||||||||||
seq2  TTGC-TAAAATACTTAAAATATTTGATCATGT  1074