BAC Information

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BAC

Clone NameB6Ng01-087G11
Chromosome5 (Build37)
Map Location 138,700,058 - 138,831,353
singlet/doubletdoublet
Overlap gene0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004
Downstream gene2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087G11.bB6Ng01-087G11.g
ACCDH900538DH900539
length718985
definitionDH900538|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G11, 5' end.DH900539|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,700,058 - 138,700,775)(138,830,357 - 138,831,353)
sequence
gaattcctggctccattccaccaactcccacttcctcctgtagtccctgg
ttcaactactgctttcatactaggtccctctaggatgagtacagagcaat
aaggacaaggggttgctttgtcctatgccaattctttttttttttttttt
ttttgtgaccctccttggtgaccactgtacccactaactcctgctccctt
ccctctgcagtggtctttggtgaacacacgctgctggtgactgtgtcagg
acagagggtgtttgtagtgaagaggcagaaccgaggtcgtgaacctattg
atgtctgagctataaaaggcacgggctggagaagaagcctgcctctgggg
cctgtccccggggtgtgggggtggggaagcataccaccttctgctgtcct
tgctggagttgggcttgtgctcactacctccttcctgaccccccacctga
gcgaggcaccaggcttaagagacttctacgctaagggactaggggaacta
tgactagggggaccccttttcttcccttctgcctaataaacactagtcca
acctgtctagggctcaggatgtgtgcacagaatggtttgtctgggtgggg
gtgaggttacaccttgtgcctatcatcgactttctagggagacagctata
cctcagtcagtgggtcaggatcaccacctggcatcataaaactgacaact
ggagacaggtgcgatggt
gaattcaaggcaagaacttgtaggcaggagtgcttgccactccacatagc
atttcttctgcccaaggcactcgctcactcacagccaaataagtacagca
gggatcatggaggatgctgattactctctggcccactcaatgaactatca
ctagatagctgttttcatacaccccaatataatctgctcatgaaataatg
ctacctgcacttgtctagacacagccacatcaatcagtacaatcaggaaa
ataacccttgcaggcaaatccacaaacctatctaatctactagtcattaa
tcctctgttgaacgtccttttcggctacctcgaggctgtgagatgttgaa
agttaaagatttattagaacactatatgaagcaagagggagaggactgtt
tcagcaactctgcatggagttgaatggacctttctgtagatcagaaattt
tatgctcaacttttgtccacttttactgtattttaacataatgagtttta
aagagaaaagaagtaactgaagttacttcactatcatctcatacgtgatt
cctgtttaatatgacattaattttcataccaatagtaatattaaacttaa
gaataggtttgcacactatgggttctcattagaaaggcttgaaatataat
ttctaaaagagaatttaacactgcatcacatttccttggtctgcatttat
ggcctctctttaaaagttatgatggccttgatagctgacttatgttgaac
agattgatataatatgacactcattattattgaaagaaaagcagtataaa
gagaaactgatgatattgggcctagcagaaggtttatctgattatcacaa
atactcagttcaccatgcatttcatgggccttttacttggccaaattttt
tgatttacctatcgtggtaaattccctcaatatctgtgttgcacgtggag
tttctacaacttaaagtactgatatatgacatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138700058_138700775
seq2: B6Ng01-087G11.b_44_761

seq1  GAATTCCTGGCTCCATTCCACCAACTCCCACTTCCTCCTGTAGTCCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCTCCATTCCACCAACTCCCACTTCCTCCTGTAGTCCCTGG  50

seq1  TTCAACTACTGCTTTCATACTAGGTCCCTCTAGGATGAGTACAGAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTACTGCTTTCATACTAGGTCCCTCTAGGATGAGTACAGAGCAAT  100

seq1  AAGGACAAGGGGTTGCTTTGTCCTATGCCAATTCTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAGGGGTTGCTTTGTCCTATGCCAATTCTTTTTTTTTTTTTTTT  150

seq1  TTTTGTGACCCTCCTTGGTGACCACTGTACCCACTAACTCCTGCTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGACCCTCCTTGGTGACCACTGTACCCACTAACTCCTGCTCCCTT  200

seq1  CCCTCTGCAGTGGTCTTTGGTGAACACACGCTGCTGGTGACTGTGTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCAGTGGTCTTTGGTGAACACACGCTGCTGGTGACTGTGTCAGG  250

seq1  ACAGAGGGTGTTTGTAGTGAAGAGGCAGAACCGAGGTCGTGAACCTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGTGTTTGTAGTGAAGAGGCAGAACCGAGGTCGTGAACCTATTG  300

seq1  ATGTCTGAGCTATAAAAGGCACGGGCTGGAGAAGAAGCCTGCCTCTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGAGCTATAAAAGGCACGGGCTGGAGAAGAAGCCTGCCTCTGGGG  350

seq1  CCTGTCCCCGGGGTGTGGGGGTGGGGAAGCATACCACCTTCTGCTGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCCGGGGTGTGGGGGTGGGGAAGCATACCACCTTCTGCTGTCCT  400

seq1  TGCTGGAGTTGGGCTTGTGCTCACTACCTCCTTCCTGACCCCCCACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGTTGGGCTTGTGCTCACTACCTCCTTCCTGACCCCCCACCTGA  450

seq1  GCGAGGCACCAGGCTTAAGAGACTTCTACGCTAAGGGACTAGGGGAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGCACCAGGCTTAAGAGACTTCTACGCTAAGGGACTAGGGGAACTA  500

seq1  TGACTAGGGGGACCCCTTTTCTTCCCTTCTGCCTAATAAACACTAGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGGGGACCCCTTTTCTTCCCTTCTGCCTAATAAACACTAGTCCA  550

seq1  ACCTGTCTAGGGCTCAGGATGTGTGCACAGAATGGTTTGTCTGGGTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTAGGGCTCAGGATGTGTGCACAGAATGGTTTGTCTGGGTGGGG  600

seq1  GTGAGGTTACACCTTGTGCCTATCATCGACTTTCTAGGGAGACAGCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTACACCTTGTGCCTATCATCGACTTTCTAGGGAGACAGCTATA  650

seq1  CCTCAGTCAGTGGGCCAGGATCACCACCAGGCATCATAAAACTGACAACT  700
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  CCTCAGTCAGTGGGTCAGGATCACCACCTGGCATCATAAAACTGACAACT  700

seq1  GGAGACAGGTGCGATGGT  718
      ||||||||||||||||||
seq2  GGAGACAGGTGCGATGGT  718

seq1: chr5_138830357_138831353
seq2: B6Ng01-087G11.g_67_1051 (reverse)

seq1  TTCATGTCAATATATACAGTACTTTTAAGTTGTTAGAAACTCCACGTGCA  50
      |||||||| |||||| |||||| ||||||||| |||||||||||||||||
seq2  TTCATGTC-ATATAT-CAGTAC-TTTAAGTTG-TAGAAACTCCACGTGCA  46

seq1  ACACAGATTAATGAGTGAATTTACCACTGATATGTTACATTCAAAATATT  100
      ||||||| || |||| ||||||||||| |||| ||   | |||||| | |
seq2  ACACAGA-TATTGAGGGAATTTACCAC-GATAGGT--AAATCAAAA-AAT  91

seq1  TTGGCCAAGTAAAAGGCCATTGAAATGCATGGTGAACTGAGTATTTGTGA  150
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TTGGCCAAGTAAAAGGCCCATGAAATGCATGGTGAACTGAGTATTTGTGA  141

seq1  TATTCAGATAAA-CTTCTGCTTAGGCCCAATATCATCAGTTTCTCTTTAT  199
      || ||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  TAATCAGATAAACCTTCTGC-TAGGCCCAATATCATCAGTTTCTCTTTAT  190

seq1  ACTGCTTTTCTTTTCAATAATAATGAGTGTCATATTATATCAATCTTGTT  249
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  ACTGCTTTTC-TTTCAATAATAATGAGTGTCATATTATATCAATC-TGTT  238

seq1  CAACATAAGTCAGCTATCAAGGCCATCATAACTTTTTAAAGAGAGGCCAT  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAACATAAGTCAGCTATCAAGGCCATCATAAC-TTTTAAAGAGAGGCCAT  287

seq1  AAATGCAGACCAAGGAAATGTGATGCAGTGTTAAATTCTCTTTTAGAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGACCAAGGAAATGTGATGCAGTGTTAAATTCTCTTTTAGAAAT  337

seq1  TATATTTCAAGCCTTTCTAATGAGAACCCATAGTGTGCAAACCTATTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCAAGCCTTTCTAATGAGAACCCATAGTGTGCAAACCTATTCTT  387

seq1  AAGTTTAATATTACTATTGGTATGAAAATTAATGTCATATTAAACAGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAATATTACTATTGGTATGAAAATTAATGTCATATTAAACAGGAA  437

seq1  TCACGTATGAGATGATAGTGAAGTAACTTCAGTTACTTCTTTTCTCTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTATGAGATGATAGTGAAGTAACTTCAGTTACTTCTTTTCTCTTTA  487

seq1  AAACTCATTATGTTAAAATACAGTAAAAGTGGACAAAAGTTGAGCATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATTATGTTAAAATACAGTAAAAGTGGACAAAAGTTGAGCATAAA  537

seq1  ATTTCTGATCTACAGAAAGGTCCATTCAACTCCATGCAGAGTTGCTGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGATCTACAGAAAGGTCCATTCAACTCCATGCAGAGTTGCTGAAA  587

seq1  CAGTCCTCTCCCTCTTGCTTCATATAGTGTTCTAATAAATCTTTAACTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCTCCCTCTTGCTTCATATAGTGTTCTAATAAATCTTTAACTTT  637

seq1  CAACATCTCACAGCCTCGAGGTAGCCGAAAAGGACGTTCAACAGAGGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTCACAGCCTCGAGGTAGCCGAAAAGGACGTTCAACAGAGGATT  687

seq1  AATGACTAGTAGATTAGATAGGTTTGTGGATTTGCCTGCAAGGGTTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTAGTAGATTAGATAGGTTTGTGGATTTGCCTGCAAGGGTTATTT  737

seq1  TCCTGATTGTACTGATTGATGTGGCTGTGTCTAGACAAGTGCAGGTAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTGTACTGATTGATGTGGCTGTGTCTAGACAAGTGCAGGTAGCA  787

seq1  TTATTTCATGAGCAGATTATATTGGGGTGTATGAAAACAGCTATCTAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATGAGCAGATTATATTGGGGTGTATGAAAACAGCTATCTAGTG  837

seq1  ATAGTTCATTGAGTGGGCCAGAGAGTAATCAGCATCCTCCATGATCCCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCATTGAGTGGGCCAGAGAGTAATCAGCATCCTCCATGATCCCTG  887

seq1  CTGTACTTATTTGGCTGTGAGTGAGCGAGTGCCTTGGGCAGAAGAAATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTATTTGGCTGTGAGTGAGCGAGTGCCTTGGGCAGAAGAAATGC  937

seq1  TATGTGGAGTGGCAAGCACTCCTGCCTACAAGTTCTTGCCTTGAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAGTGGCAAGCACTCCTGCCTACAAGTTCTTGCCTTGAATTC  985