BAC Information

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BAC

Clone NameB6Ng01-087N18
Chromosome5 (Build37)
Map Location 39,881,858 - 40,074,579
singlet/doubletdoublet
Overlap geneHs3st1
Upstream geneSlc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
Downstream geneEG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N18.bB6Ng01-087N18.g
ACCDH900868DH900869
length1681,172
definitionDH900868|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N18, 5' end.DH900869|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,881,858 - 39,881,991)(40,073,372 - 40,074,579)
sequence
cattgtgtctgggtagtagaatatgttagtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgtctgt
gtgatgaatatgataatattacaatggaagtatagttaacctcattctat
ttgccataagtaagatta
gaattcattgggctaaaatgtatttaattaatgaaaatcacaaagaggaa
gacatgaagatgggcgatggaggtgatggagtgtcctagtattaatggag
gggaagaatgagaggtcaatcaagaaaatcagtgtgataaagattataaa
caggtatgaaaattttcaaacaacaaattgaaataaataaataaactaaa
acaatcaaataaaaaccaagatcatgatcttgttttatcctaaaggtaat
tacagagactattagttttcactttgatggtaaaaggaattacctagcct
ccttgctaacaaaaataatgagagccttacactttttattacaagtagtc
tctggaaagaattcgagtttgtattgacagattgggtttggctgttctat
ggaacaactataatcacggctccctcactgactggcacagttgatttctt
cttcccaggatgctctcagggtgacttggactctaaccactctttctccc
acaggcattgtaacaccatgacaaaggactcacctccatgtactgaaaga
caacaacccagtgatctagcttccaatagactccccccaaaagagcctag
ttgatttgttcacatattttaactaaaacagttgggcacagcacagtgat
agagacatttgggaagagaaagtgaaggtgcacaatattctatggagagc
aaaagtcacccctggcagtttacctggttgataatgtttggctctatgct
gagccaagtaaagaagggcaactctgaacttggcacaacagaaacctcca
gcaaaaagccttagtttccaaaacacgatcaccttccagcaataagaact
ttgctgaggttcaaagatgcattgagcctcagtttctccatctgtgaaat
ggggagaatctgtcatcacaaggcagctcagctatcagaagtagactaca
cgcgagggacaaagtagtatccatatccactttaaaagtagcaattatta
tgtatatttaatgtgaagtgtgataaatcattatcatccaagaacataat
tattagtttgtaattatttaccagaatatgaaagcattgaataaagcatc
actgaagcctccagtgagatcggagcagttcgacctgcattatgacttga
tgaacggttatattattagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39881858_39881991
seq2: B6Ng01-087N18.b_55_222

seq1  CATTGTGTCTGGGTAGTAGAATATGTTA----------------------  28
      ||||||||||||||||||||||||||||                      
seq2  CATTGTGTCTGGGTAGTAGAATATGTTAGTGTGTGTGTGTGTGTGTGTGT  50

seq1  ------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTCTGT  66
                  ||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTCTGT  100

seq1  GTGATGAATATGATAATATTACAATGGAAGTATAGTTAACAGCATTCTAT  116
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GTGATGAATATGATAATATTACAATGGAAGTATAGTTAACCTCATTCTAT  150

seq1  TAGCCAGAAGTAAGAGTA  134
      | |||| |||||||| ||
seq2  TTGCCATAAGTAAGATTA  168

seq1: chr5_40073372_40074579
seq2: B6Ng01-087N18.g_69_1240 (reverse)

seq1  AAGCTAATAATATATTACGTTTTCTACTAAAAGTCAATTAAATGCAGGGT  50
      ||||||||||||||  ||  ||    |   ||||||    |||||| |||
seq2  AAGCTAATAATATA--ACCGTT----CATCAAGTCA---TAATGCA-GGT  40

seq1  CGAAACTGCTCCCGAACTCAACTGGGAGGCCTCAGTGATGCTTATACTTC  100
      || ||||||| |||| ||| ||| |||||| |||||||||||| || |||
seq2  CG-AACTGCT-CCGATCTC-ACT-GGAGGCTTCAGTGATGCTT-TA-TTC  84

seq1  AAAATTGCTTTCATTATTCTTGGTAAATTAAATATAACAAAACTAATTAA  150
      ||   |||||||| ||||| ||||||| ||| ||     ||||||| |||
seq2  AA---TGCTTTCA-TATTC-TGGTAAA-TAATTA----CAAACTAA-TAA  123

seq1  TTATGTTCTGTGATGATAATGATTTATCACCACTTCACCATTAAAATATA  200
      |||||||||  |||||||||||||||||| ||||||| |||| |||||||
seq2  TTATGTTCTTGGATGATAATGATTTATCA-CACTTCA-CATT-AAATATA  170

seq1  ACAATAATAATTGCTACTTTTAAAAGTGGATATGGATACTTACTTTGTCC  250
         |||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  --CATAATAATTGCTACTTTT-AAAGTGGATATGGATAC-TACTTTGTCC  216

seq1  CTCGCGTGTTAGTCTACTTCTGATAGCTGAGCTGCCTTGTGATGACAGAA  300
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  CTCGCGTG-TAGTCTACTTCTGATAGCTGAGCTGCCTTGTGATGACAG-A  264

seq1  TTCTCCCCATTTCACAGATGGAGAAACTGAGGCTCAATGCATCTTTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCATTTCACAGATGGAGAAACTGAGGCTCAATGCATCTTTGAAC  314

seq1  CTCAGCAAAGTTCTTATTGCTGGAAGGTGATCGTGTTTTGGAAACTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAAGTTCTTATTGCTGGAAGGTGATCGTGTTTTGGAAACTAAGG  364

seq1  CTTTTTGCTGGAGGTTTCTGTTGTGCCAAGTTCAGAGTTGCCCTTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCTGGAGGTTTCTGTTGTGCCAAGTTCAGAGTTGCCCTTCTTTA  414

seq1  CTTGGCTCAGCATAGAGCCAAACATTATCAACCAGGTAAACTGCCAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCAGCATAGAGCCAAACATTATCAACCAGGTAAACTGCCAGGGG  464

seq1  TGACTTTTGCTCTCCATAGAATATTGTGCACCTTCACTTTCTCTTCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTGCTCTCCATAGAATATTGTGCACCTTCACTTTCTCTTCCCAA  514

seq1  ATGTCTCTATCACTGTGCTGTGCCCAACTGTTTTAGTTAAAATATGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTATCACTGTGCTGTGCCCAACTGTTTTAGTTAAAATATGTGAA  564

seq1  CAAATCAACTAGGCTCTTTTGGGGGGAGTCTATTGGAAGCTAGATCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAACTAGGCTCTTTTGGGGGGAGTCTATTGGAAGCTAGATCACTG  614

seq1  GGTTGTTGTCTTTCAGTACATGGAGGTGAGTCCTTTGTCATGGTGTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGTCTTTCAGTACATGGAGGTGAGTCCTTTGTCATGGTGTTACA  664

seq1  ATGCCTGTGGGAGAAAGAGTGGTTAGAGTCCAAGTCACCCTGAGAGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGGGAGAAAGAGTGGTTAGAGTCCAAGTCACCCTGAGAGCATC  714

seq1  CTGGGAAGAAGAAATCAACTGTGCCAGTCAGTGAGGGAGCCGTGATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGAAGAAATCAACTGTGCCAGTCAGTGAGGGAGCCGTGATTATA  764

seq1  GTTGTTCCATAGAACAGCCAAACCCAATCTGTCAATACAAACTCGAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCATAGAACAGCCAAACCCAATCTGTCAATACAAACTCGAATTC  814

seq1  TTTCCAGAGACTACTTGTAATAAAAAGTGTAAGGCTCTCATTATTTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGACTACTTGTAATAAAAAGTGTAAGGCTCTCATTATTTTTGT  864

seq1  TAGCAAGGAGGCTAGGTAATTCCTTTTACCATCAAAGTGAAAACTAATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGAGGCTAGGTAATTCCTTTTACCATCAAAGTGAAAACTAATAG  914

seq1  TCTCTGTAATTACCTTTAGGATAAAACAAGATCATGATCTTGGTTTTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAATTACCTTTAGGATAAAACAAGATCATGATCTTGGTTTTTAT  964

seq1  TTGATTGTTTTAGTTTATTTATTTATTTCAATTTGTTGTTTGAAAATTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTTTTAGTTTATTTATTTATTTCAATTTGTTGTTTGAAAATTTT  1014

seq1  CATACCTGTTTATAATCTTTATCACACTGATTTTCTTGATTGACCTCTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGTTTATAATCTTTATCACACTGATTTTCTTGATTGACCTCTCA  1064

seq1  TTCTTCCCCTCCATTAATACTAGGACACTCCATCACCTCCATCGCCCATC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCCTCCATTAATACTAGGACACTCCATCACCTCCATCGCCCATC  1114

seq1  TTCATGTCTTCCTCTTTGTGATTTTCATTAATTAAATACATTTTAGCCCA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCTTCCTCTTTGTGATTTTCATTAATTAAATACATTTTAGCCCA  1164

seq1  ATGAATTC  1208
      ||||||||
seq2  ATGAATTC  1172