BAC Information

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BAC

Clone NameB6Ng01-087P09
Chromosome5 (Build37)
Map Location 14,737,094 - 14,738,166
singlet/doubletsinglet
Overlap genePclo
Upstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087P09.bB6Ng01-087P09.g
ACCDH900944DH900945
length1,2531,074
definitionDH900944|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P09, 5' end.DH900945|Mus musculus domesticus DNA, BAC clone: B6Ng01-087P09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagaccttcaaagaagacctaaacccaatactcttcaaact
atcccacaaaatagaaacagaaggaacgctacccaatttgttctatgaag
ccacagttgcacttattcctaaacacacaaagactcaacaaagaaagaga
acttcagaacatttttgcttatgaatatcaatgcaaaaaaaactcaataa
aattcttgcaaaccaaatccaagaacacatcaaaatgatcatttaccaca
atcaagcaggcttcatccaagaaatgcagagataattcaacatacagaaa
tccactgaaaaacaaaaaccacatgatcatctcattagattctgagaaat
aatttgataaaatttaacaccccttcatgttaaaagtcttggaaaaatca
ggaattccaccagaggactcataaacctgatgaacgacttcagcaatgtg
gctggatataaaattaactttaacaaatcagtagccttcctctatttaag
gacaaataggctgagaaagaaattacggaaatgacacccttcacaatagt
cacaaataatattagataccttggtgtgactctaaccaagcaagtgaaag
atctgtatgacaagaatttcaagtctctgaagaaagaaatttaacagaag
gtggaaagatctcccatgctcatggattgacaggatgaatataataaaat
tggccatcttgccaaaagcaatctacagattcaatgcaatccccattaaa
attccaactcaatttttcatagaattagaaacagcaatttgcaaattcat
ttggaataacaaaaaatataggaaagcaaaaactattctcaacaaaacaa
cttctggggaaatcaccatccctaacctcaagctgtattacagagcaata
gtgataaaaactttgtggtattgttacagagagaggcaggatagatcagt
ggaataaattgaagacccagaatgaacttacacacctctggtcactgatc
ttgacaaagaggtaacccattcagtttgaaaaaagaagcattttcaacaa
atggtgctggttcactgaacggttatcatgtaaagaaaggcaaatggaat
cattcttattctcctgtacaaggctttagcccaagggtaatcaaggaacg
ccatataaccgaatcactgaactataaaagataactgggattgcttggaa
ccatgggcctatgggggaatttccttgagcagtaccaatgctttagcgtc
tga
gaattcttaaaagattaggaatacaactacctcaagatccagaaatcatt
aaatatttcatagaagtttaaaaagaaagtaaggaaaggaaggaattctg
cagcaggatgaacttagaatctctgttgttttctcacaaagtagacatta
actttcattaagattctaagaataccattatcttctttaggaacttactg
gactccttgaaaaaatggattacaatgatgcttttctcttgatttctgag
atttctcagaatgctattgtgtctgtgagtgagtttgatccagataccta
gaactactattttgatgcctgctgattcatttttctcgaatacaaggagg
tttattagatctgcaactttccttttagttatacaaaatactaaaaattt
tggttttgaggatcttacatcagaacaaatttcaatagattgatcttttt
ctttaaatatagtaatttaagtaccatcacgccgtacggtcaaaaacaat
tgttgacccttcatagtgtatacctaaatcaaaatggctattatacatgt
tgatatcttttcttggactcacatattgtaatgtggtttaccatttactg
aagcagtgcatgatcacatcacctacttaggtctcatgcatgtgtgacag
cttttatgagttcatatgtgccacaactgtataacattcagaacacaaat
ctttaatgcactcttccttaattctctagatcttatagtctctcttttcc
acagtgactccaggttctgggacaggaagttctcatgaacttgttccatt
tatcaccacttattctaagttatttgacatatgtttctatgcactgagaa
cttctcatttccaaaaataactctcatgaccaacactgagaacagcatta
cattcttagaaattttgtctgccaaagaaattagttcttttgcttttaat
tttgcctgttgcaaattttcagacaggggcacaatacagccagattcttt
ttttttgttcccatttttttattaaggtttagctcatttacatttccaat
gctaataccaaaagtccccatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14737094_14738166
seq2: B6Ng01-087P09.g_66_1139

seq1  GAATTCTTAAAAGATTAGGAATACAACTACCTCAAGATCCAGAAATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAAGATTAGGAATACAACTACCTCAAGATCCAGAAATCATT  50

seq1  AAATATTTCATAGAAGTTTAAAAAGAAAGTAAGGAAAGGAAGGAATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCATAGAAGTTTAAAAAGAAAGTAAGGAAAGGAAGGAATTCTG  100

seq1  CAGCAGGATGAACTTAGAATCTCTGTTGTTTTCTCACAAAGTAGACATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGATGAACTTAGAATCTCTGTTGTTTTCTCACAAAGTAGACATTA  150

seq1  ACTTTCATTAAGATTCTAAGAATACCATTATCTTCTTTAGGAACTTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATTAAGATTCTAAGAATACCATTATCTTCTTTAGGAACTTACTG  200

seq1  GACTCCTTGAAAAAATGGATTACAATGATGCTTTTCTCTTGATTTCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTGAAAAAATGGATTACAATGATGCTTTTCTCTTGATTTCTGAG  250

seq1  ATTTCTCAGAATGCTATTGTGTCTGTGAGTGAGTTTGATCCAGATACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAGAATGCTATTGTGTCTGTGAGTGAGTTTGATCCAGATACCTA  300

seq1  GAACTACTATTTTGATGCCTGCTGATTCATTTTTCTCGAATACAAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTATTTTGATGCCTGCTGATTCATTTTTCTCGAATACAAGGAGG  350

seq1  TTTATTAGATCTGCAACTTTCCTTTTAGTTATACAAAATACTAAAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGATCTGCAACTTTCCTTTTAGTTATACAAAATACTAAAAATTT  400

seq1  TGGTTTTGAGGATCTTACATCAGAACAAATTTCAATAGATTGATCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGAGGATCTTACATCAGAACAAATTTCAATAGATTGATCTTTTT  450

seq1  CTTTAAATATAGTAATTTAAGTACCATCACGCCGTACGGTCAAAAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATATAGTAATTTAAGTACCATCACGCCGTACGGTCAAAAACAAT  500

seq1  TGTTGACCCTTCATAGTGTATACCTAAATCAAAATGGCTATTATACATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCCTTCATAGTGTATACCTAAATCAAAATGGCTATTATACATGT  550

seq1  TGATATCTTTTCTTGGACTCACATATTGTAATGTGGTTTACCATTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTTTTCTTGGACTCACATATTGTAATGTGGTTTACCATTTACTG  600

seq1  AAGCAGTGCATGATCACATCACCTACTTAGGTCTCATGCATGTGTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGCATGATCACATCACCTACTTAGGTCTCATGCATGTGTGACAG  650

seq1  CTTTTATGAGTTCATATGTGCCACAACTGTATAACATTCAGAACACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGAGTTCATATGTGCCACAACTGTATAACATTCAGAACACAAAT  700

seq1  CTTTAATGCACTCTTCCTTAATTCTCTAGATCTTATAGTCTCTCTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGCACTCTTCCTTAATTCTCTAGATCTTATAGTCTCTCTTTTCC  750

seq1  ACAGTGACTCCAGGTTCTGGGACAGGAAGTTCTCATGAACTTGTTCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACTCCAGGTTCTGGGACAGGAAGTTCTCATGAACTTGTTCCATT  800

seq1  TATCACCACTTATTCTAAGTTATTTGACATATGTTTCTATGCACTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCACTTATTCTAAGTTATTTGACATATGTTTCTATGCACTGAGAA  850

seq1  CTTCTCA-TTCCAAAAATAACTCTCATGACCAACACTGAGAACAGCA-TA  898
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTCTCATTTCCAAAAATAACTCTCATGACCAACACTGAGAACAGCATTA  900

seq1  CATTCTTAG-AATTTTGTCTGCCAAAGAAATTAGTTCTTTACATTTTAAT  947
      ||||||||| ||||||||||||||||||||||||||||||   |||||||
seq2  CATTCTTAGAAATTTTGTCTGCCAAAGAAATTAGTTCTTTTGCTTTTAAT  950

seq1  TTTGCCTTGTGCAAATTTTCAAGACAGGGGCACAATACAGCCAGATTCTT  997
      |||||||  ||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGCCTGTTGCAAATTTTC-AGACAGGGGCACAATACAGCCAGATTCTT  999

seq1  TTTTTTTGTTCCCATTTTTTTATTAGGTATTTAGCTCATTTACATTTCCA  1047
      ||||||||||||||||||||||||| |  |||||||||||||||||||||
seq2  TTTTTTTGTTCCCATTTTTTTATTAAG-GTTTAGCTCATTTACATTTCCA  1048

seq1  ATGCT-ATACCAAAAGTCCCCCATACC  1073
      ||||| ||||||||||| |||||||||
seq2  ATGCTAATACCAAAAGT-CCCCATACC  1074