BAC Information

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BAC

Clone NameB6Ng01-088B22
Chromosome5 (Build37)
Map Location 39,664,124 - 39,804,074
singlet/doubletdoublet
Overlap geneLOC384174
Upstream geneOtop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneHs3st1, EG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088B22.bB6Ng01-088B22.g
ACCDH901063DH901064
length1,1471,043
definitionDH901063|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B22, 5' end.DH901064|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,664,124 - 39,665,283)(39,803,046 - 39,804,074)
sequence
gaattcagaaatggaattgggttaccagtcagttatgttcagtgcctgtg
gatgcactgtaagaggacagcaggaataatcttgccacatccttgcatgg
attagggatttggacaagactgggatggcaagaaagcaataataataata
ataataataataataataataataataataataataataaacaataatag
acagaggcaggcacacaaaataactggggtcgggtagacagggttctctg
tgaaaaaaactgtagtaccttgggagctcatcatgtatattatgtacagt
tgaacaatgaagcttaataaggaggcagggctatgattaatagctggatc
aaggagatgggtctagctaaactcagcatgagtagcttctgtagggtaga
agtttctaggccatagaaggagggataagctatggtgggttttttttttt
tttttgcacacactatcagcatctacacatggactagacaaagaccatgc
cattttcttttgagctttaccttagggttgggaacggggagtttgccatt
cctcactggatctgaggctcctgtgctctttatgttattatagccagcaa
gttctcacaatgaagtgatggcatggctcaggagaagcttgaaagctata
tgttaccatagcctcaaatgtagccagccaaggctaggatagcacagctc
aggaatatggctgggcttggcaacttactgagctctctcctaacagcata
ctcttatttcactgtctactctaaggacaatacataatagtatgttctct
caagagacctttaatatagtactggccattacggagtgttgacatgtggc
ttgctcagagtgaatggatatcaaaatgcagtttcctgtctctgggattt
gtcagtcagccatactcaacactttgcccaaagcaatcacagccattact
ctgtgatcaggttagtgccctggctcaaatcactgccattgacctcatgt
ggtttgacccaatgccatctgtttccactcctcctgaatttttccaggat
gaatcttctcgtggtgatgcttctctaacaagacttccagctgtctttcc
aagtgagttctccctccactggcctatctcattctgcaccctttgtg
gaattcctttggaagaggatatcttaaagagacaaagacccagctcagag
atgatagtgtaagccaggacttaactctggttacttttctgtatgaccaa
acaaaccagaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaatga
aagacaaagatatttatttttatttattttggctcatggtttgagatgat
acagagttcaccatggtggcaaaagcttaaatacagggggcttatatggc
ttgatggcaggagtgtgcaacatcaacttgataaacagctcaccaggcca
ataagtagcaaaagtccaagtccctgaaaccagcgaatgggttactacca
gtcaaatacattcaaagtgggtcttatccccctcagctgtaccttcccca
aatgcccccagagaaatgcccagaggtgcctcctaagggattctaaatcc
acacaagttgccaatgaagattaataattaagaatcaaaagaaacactag
aattgtaatttacagagtcaaaatacatgctaaaacagatggattaaagt
tgagagcagcgccgggcttggtggcccacgcctttaatcccagcacttgg
gaggcagaggcaggtggatttctgagtttgaggccagcctggtctacaaa
gtgagttccaggacagccagagctaatacagagaaacccttgtcttcgaa
aaaccaaaaaaaaaaaaaagttggagagcagcaaaaacccaacatattta
tgtatttggcttagacactcctattaaattatgtttttaacattaaattc
atcatcttctaggcaagagaatttgctggagtggtacttactaaattctg
tcaaatggcttcatatttttttttctgaaataatattttatttaggattt
gtatgctataaaacaatgggcaggtttttcttttcatattttaaaacttg
gtcattggatttctttgtgaataatatatcatgcacccattgcattcatc
tcctgtctcttatagtacctcatccactctgccacttcctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39664124_39665283
seq2: B6Ng01-088B22.b_45_1191

seq1  GAATTCAGAAATGGAATTGGGTTACCAGTCAGTTATGTTCAGTGCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATGGAATTGGGTTACCAGTCAGTTATGTTCAGTGCCTGTG  50

seq1  GATGCACTGTAAGAGGACAGCAGGAATAATCTTGCCACATCCTTGCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTGTAAGAGGACAGCAGGAATAATCTTGCCACATCCTTGCATGG  100

seq1  ATTAGGGATTTGGACAAGACTGGGATGGCAAGAAAGCAATAATAATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGATTTGGACAAGACTGGGATGGCAAGAAAGCAATAATAATAATA  150

seq1  ATAATAATAATAATAATAATAATAATAATAATAATAATAAACAATAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAATAATAATAATAATAATAATAATAAACAATAATAG  200

seq1  ACAGAGGCAGGCACACAAAATAACTGGGGTCGGGTAGACAGGGTTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCAGGCACACAAAATAACTGGGGTCGGGTAGACAGGGTTCTCTG  250

seq1  TGAAAAAAACTGTAGTACCTTGGGAGCTCATCATGTATATTATGTACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAACTGTAGTACCTTGGGAGCTCATCATGTATATTATGTACAGT  300

seq1  TGAACAATGAAGCTTAATAAGGAGGCAGGGCTATGATTAATAGCTGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATGAAGCTTAATAAGGAGGCAGGGCTATGATTAATAGCTGGATC  350

seq1  AAGGAGATGGGTCTAGCTAAACTCAGCATGAGTAGCTTCTGTAGGGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGGGTCTAGCTAAACTCAGCATGAGTAGCTTCTGTAGGGTAGA  400

seq1  AGTTTCTAGGCCATAGAAGGAGGGATAAGCTATGGTGGGTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAGGCCATAGAAGGAGGGATAAGCTATGGTGGGTTTTTTTTTTT  450

seq1  TTTTTGCACACACTATCAGCATCTACACATGGACTAGACAAAGACCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCACACACTATCAGCATCTACACATGGACTAGACAAAGACCATGC  500

seq1  CATTTTCTTTTGAGCTTTACCTTAGGGTTGGGAACGGGGAGTTTGCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTTGAGCTTTACCTTAGGGTTGGGAACGGGGAGTTTGCCATT  550

seq1  CCTCACTGGATCTGAGGCTCCTGTGCTCTTTATGTTATTATAGCCAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGGATCTGAGGCTCCTGTGCTCTTTATGTTATTATAGCCAGCAA  600

seq1  GTTCTCACAATGAAGTGATGGCATGGCTCAGGAGAAGCTTGAAAGCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACAATGAAGTGATGGCATGGCTCAGGAGAAGCTTGAAAGCTATA  650

seq1  TGTTACCATAGCCTCAAATGTAGCCAGCCAAGGCTAGGATGGCACAGCTC  700
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTTACCATAGCCTCAAATGTAGCCAGCCAAGGCTAGGATAGCACAGCTC  700

seq1  AGGAATATGGCTGGGCTTGGCAACTTACTGAGCTCTCTCCTAACAGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATGGCTGGGCTTGGCAACTTACTGAGCTCTCTCCTAACAGCATA  750

seq1  CTCTTATTTCACTGTCTACTCTAAGGACAATACATAATAGTATGTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTTCACTGTCTACTCTAAGGACAATACATAATAGTATGTTCTCT  800

seq1  CAAGAGACCTTTAATATAGTACTGGCCATTACGGTGTGTTGACATGTGGC  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAGAGACCTTTAATATAGTACTGGCCATTACGGAGTGTTGACATGTGGC  850

seq1  TTGCTCAGAGTGAATGGATATCAAAATGCAGTTTCCTGTCTCTGGGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGAGTGAATGGATATCAAAATGCAGTTTCCTGTCTCTGGGATTT  900

seq1  GTCAGTCAGCCATACTCAACACTTTGCCCAAAGCAATCACAGCCATTACC  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTCAGTCAGCCATACTCAACACTTTGCCCAAAGCAATCACAGCCATTA-C  949

seq1  TCTGTGATCAGGTTAGTGCCCTGGCTCAAATCCCTGCCATTGACCTCATT  1000
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TCTGTGATCAGGTTAGTGCCCTGGCTCAAATCACTGCCATTGACCTCA-T  998

seq1  GTTGTTTTGCCCAATGCCATCTGTTTTCCACTTCCTCCTGAATTTTTTCC  1050
      || ||||  |||||||||||||| ||||||| |||||||||| |||||||
seq2  GTGGTTTGACCCAATGCCATCTG-TTTCCAC-TCCTCCTGAA-TTTTTCC  1045

seq1  AGGATGAATCTTCTCGTGTCTAATGCTTTCCTCTAACCAGCACTCCCAGC  1100
      ||||||||||||||||||  | ||||||  ||||||| || ||| |||||
seq2  AGGATGAATCTTCTCGTG-GTGATGCTT--CTCTAACAAG-ACTTCCAGC  1091

seq1  TGTCTTTCAAATGTGTGTCTCTCCCTCCTCTGTGCTATCTCATTCTGCCA  1150
      |||||||| || ||| || ||||||||| |||  ||||||||||||| ||
seq2  TGTCTTTCCAA-GTGAGT-TCTCCCTCCACTGGCCTATCTCATTCTG-CA  1138

seq1  CCTCTTTGTG  1160
      || |||||||
seq2  CC-CTTTGTG  1147

seq1: chr5_39803046_39804074
seq2: B6Ng01-088B22.g_67_1109 (reverse)

seq1  GGGAGGAAGGTTGCAAGAGTGGATGGAGGGTGACTATAAGAGACAGGGAG  50
      |||||||||  ||  ||||||||| ||||   ||||||||||||| ||||
seq2  GGGAGGAAG--TGGCAGAGTGGAT-GAGG--TACTATAAGAGACA-GGAG  44

seq1  ATGAATGCAATTGGGGTGCATGATATATAATTCACAAAGAA--TCAATGA  98
      |||||||||||  ||||||||||||||| ||||||||||||   ||||||
seq2  ATGAATGCAAT--GGGTGCATGATATATTATTCACAAAGAAATCCAATGA  92

seq1  -CAAGTTTTAAAATATG-AAAGAAAAA-CTG-CCATTG-TTTATAGCATA  143
       |||||||||||||||| ||||||||| ||| |||||| |||||||||||
seq2  CCAAGTTTTAAAATATGAAAAGAAAAACCTGCCCATTGTTTTATAGCATA  142

seq1  CATAT-CTGAAT-AAATATTA-TTCAG-AAAAAAAATATGAAG-CATTTG  188
      || || || ||| |||||||| ||||| ||||||||||||||| ||||||
seq2  CAAATCCTAAATAAAATATTATTTCAGAAAAAAAAATATGAAGCCATTTG  192

seq1  ACAGAA-TTAGTAAGTA-CACT-CAGCAAATTCTC-TGCCTAGAAGATGA  234
      |||||| |||||||||| |||| |||||||||||| ||||||||||||||
seq2  ACAGAATTTAGTAAGTACCACTCCAGCAAATTCTCTTGCCTAGAAGATGA  242

seq1  TGAAATTAATGTTAAAAACCATAA-TTAATAGGAGTGTCTAAGCCAAATA  283
      |||| ||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TGAATTTAATGTTAAAAA-CATAATTTAATAGGAGTGTCTAAGCCAAATA  291

seq1  CAT-AATATGTTGGGTTTTTGCTGCTCT-CAAC-TTTTTTTTTTTTTGGT  330
      ||| |||||||||||||||||||||||| |||| ||||||||||||||||
seq2  CATAAATATGTTGGGTTTTTGCTGCTCTCCAACTTTTTTTTTTTTTTGGT  341

seq1  TTTTCG-AGAC-AGGGTTTCTCTGTA-TAGCTCTGGCTGTCCTGGAACTC  377
      |||||| |||| |||||||||||||| |||||||||||||||||||||||
seq2  TTTTCGAAGACAAGGGTTTCTCTGTATTAGCTCTGGCTGTCCTGGAACTC  391

seq1  ACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCC  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCC  441

seq1  TCCCAAGTGCTGGGATTAAAGGCGTGGGCCACCAAGCCCGGCGCTGCTCT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGATTAAAGGCGTGGGCCACCAAGCCCGGCGCTGCTCT  491

seq1  CAACTTTAATCCATCTGTTTTAGCATGTATTTTGACTCTGTAAATTACAA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTAATCCATCTGTTTTAGCATGTATTTTGACTCTGTAAATTACAA  541

seq1  TTCTAGTGTTTCTTTTGATTCTTAATTATTAATCTTCATTGGCAACTTGT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGTTTCTTTTGATTCTTAATTATTAATCTTCATTGGCAACTTGT  591

seq1  GTGGATTTAGAATCCCTTAGGAGGCACCTCTGGGCATTTCTCTGGGGGCA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTAGAATCCCTTAGGAGGCACCTCTGGGCATTTCTCTGGGGGCA  641

seq1  TTTGGGGAAGGTACAGCTGAGGGGGATAAGACCCACTCTGAATGTATTTG  677
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTGGGGAAGGTACAGCTGAGGGGGATAAGACCCACTTTGAATGTATTTG  691

seq1  ACTGGTAGTAACCCATTCGCTGGTTTCAGGGACTTGGACTTCTGCTACTT  727
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTGGTAGTAACCCATTCGCTGGTTTCAGGGACTTGGACTTTTGCTACTT  741

seq1  ATTGGCCTGGTGAGCTGTTTATCAAGTTGATGTTGCACACTCCTGCCATC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCTGGTGAGCTGTTTATCAAGTTGATGTTGCACACTCCTGCCATC  791

seq1  AAGCCATATAAGCCACCTGTATCTAAGCTTTTGCCACCATGGTGAACTCT  827
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AAGCCATATAAGCCCCCTGTATTTAAGCTTTTGCCACCATGGTGAACTCT  841

seq1  GTATCATCTCAAACCATGAGCCAAAATAAATAAAAATAAATATCTTTGTC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCTCAAACCATGAGCCAAAATAAATAAAAATAAATATCTTTGTC  891

seq1  TTTCATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCTGGTTT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCTGGTTT  941

seq1  GTTTGGTCATACAGAAAAGTAACCAGAGTTAAGTCCTGGCTTACACTATC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCATACAGAAAAGTAACCAGAGTTAAGTCCTGGCTTACACTATC  991

seq1  ATCTCTGAGCTGGGTCTTTGTCTCTTTAAGATATCCTCTTCCAAAGGAAT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGCTGGGTCTTTGTCTCTTTAAGATATCCTCTTCCAAAGGAAT  1041

seq1  TC  1029
      ||
seq2  TC  1043