BAC Information

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BAC

Clone NameB6Ng01-088C18
Chromosome5 (Build37)
Map Location 22,879,448 - 23,024,091
singlet/doubletdoublet
Overlap gene4930580E04Rik, BC050254, Srpk2
Upstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088C18.bB6Ng01-088C18.g
ACCDH901100DH901101
length565212
definitionDH901100|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C18, 5' end.DH901101|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,023,524 - 23,024,091)(22,879,448 - 22,879,659)
sequence
gaattctccggtatgtatgtcttgtgagacatggtctcttcaggccctgt
gcagaccattgtcccaagagtgagatccatctgaggagttacctttagtc
tctggaaacgtgtgggtgttttaggctccttgtcacaccatggggtaaaa
tcagatgccttctcccaggagagggtggcagcacttgtcacttagcagca
ctgtcatgtggccgttacatgtgcaggctctctgttctccttcctactta
gaagggatttctccatctgcccatgcacagttgcctccatccagcgcagt
cacagtgtgctggctgcttttgcagcgtgtgccagcactgctgagacaac
agtggggacacaagcttcctgggcttgaatctggttttcttttcttttct
tttcttttcttttcttttcttttcttttcttttcttttcttttcttttct
tttcttttcttttcttttcttttcttttcttttcttttcttttcttttct
tttcttttctttcctccctcccttcccctccctcccttcccctccctccc
ttcccttaccctccc
caatgacgaaaaaggcaaatttttctgttttgggaaatgactatttattt
cccaaatggatgacagcgaatgtcatcaagagtagcattggatttcaggg
atggagaagatggactctctatcaaccctgaaccatctaagaaacttagt
aacccaaaggctaactctatcctggacacttgatctgtggtgtggtgtgg
tgtggtgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23023524_23024091
seq2: B6Ng01-088C18.b_40_604 (reverse)

seq1  GGGAGGGAAGGGAGGGAGGGGAAGGGAAGGGAGGGAGGGGAAGGGAGGGA  50
                   ||||||| |||||||||||||||||||||||||||||
seq2  -------------GGGAGGGTAAGGGAAGGGAGGGAGGGGAAGGGAGGGA  37

seq1  GGGGAAGGGAGGGAGG----------AAAGAAAAGAAAAGAAAAGAAAAG  90
      ||||||||||||||||          ||||||||||||||||||||||||
seq2  GGGGAAGGGAGGGAGGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG  87

seq1  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG  137

seq1  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAACCAGAT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAACCAGAT  187

seq1  TCAAGCCCAGGAAGCTTGTGTCCCCACTGTTGTCTCAGCAGTGCTGGCAC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCCAGGAAGCTTGTGTCCCCACTGTTGTCTCAGCAGTGCTGGCAC  237

seq1  ACGCTGCAAAAGCAGCCAGCACACTGTGACTGCGCTGGATGGAGGCAACT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCAAAAGCAGCCAGCACACTGTGACTGCGCTGGATGGAGGCAACT  287

seq1  GTGCATGGGCAGATGGAGAAATCCCTTCTAAGTAGGAAGGAGAACAGAGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGGCAGATGGAGAAATCCCTTCTAAGTAGGAAGGAGAACAGAGA  337

seq1  GCCTGCACATGTAACGGCCACATGACAGTGCTGCTAAGTGACAAGTGCTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCACATGTAACGGCCACATGACAGTGCTGCTAAGTGACAAGTGCTG  387

seq1  CCACCCTCTCCTGGGAGAAGGCATCTGATTTTACCCCATGGTGTGACAAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCTCCTGGGAGAAGGCATCTGATTTTACCCCATGGTGTGACAAG  437

seq1  GAGCCTAAAACACCCACACGTTTCCAGAGACTAAAGGTAACTCCTCAGAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAAAACACCCACACGTTTCCAGAGACTAAAGGTAACTCCTCAGAT  487

seq1  GGATCTCACTCTTGGGACAATGGTCTGCACAGGGCCTGAAGAGACCATGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCACTCTTGGGACAATGGTCTGCACAGGGCCTGAAGAGACCATGT  537

seq1  CTCACAAGACATACATACCGGAGAATTC  568
      ||||||||||||||||||||||||||||
seq2  CTCACAAGACATACATACCGGAGAATTC  565

seq1: chr5_22879448_22879659
seq2: B6Ng01-088C18.g_74_285

seq1  CAATGACGAAAAAGGCAAATTTTTCTGTTTTGGGAAATGACTATTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACGAAAAAGGCAAATTTTTCTGTTTTGGGAAATGACTATTTATTT  50

seq1  CCCAAATGGATGACAGCGAATGTCATCAAGAGTAGCATTGGATTTCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATGGATGACAGCGAATGTCATCAAGAGTAGCATTGGATTTCAGGG  100

seq1  ATGGAGAAGATGGACTCTCTATCAACCCTGAACCATCTAAGAAACTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAGATGGACTCTCTATCAACCCTGAACCATCTAAGAAACTTAGT  150

seq1  AACCCAAAGGCTAACTCTATCCTGGACACTTGATCTGTGGTGTGGTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAGGCTAACTCTATCCTGGACACTTGATCTGTGGTGTGGTGTGG  200

seq1  TGTGGTGTGGTG  212
      ||||||||||||
seq2  TGTGGTGTGGTG  212