BAC Information

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BAC

Clone NameB6Ng01-088F17
Chromosome5 (Build37)6 (Build37)
Map Location 6,272,481 - 6,273,08671,134,514 - 71,135,659
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830, LOC100042651
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088F17.bB6Ng01-088F17.g
ACCDH901229DH901230
length9951,133
definitionDH901229|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F17, 5' end.DH901230|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,272,481 - 6,273,086)(71,134,514 - 71,135,659)
sequence
gaattcacagtgacaattgccgagcgaagctcattcgtcttgccatcaaa
atttgcagtccaatttcttaacagaatttcttaacaggaagcatcatgac
gaagaggcattggaaacgctgacagtatcccccatctgggttccgcaccc
atggggcagacacatgctcatcaccagcaagatcagcttcttcattttga
caacattgcactagctgctccggaacccacactggctctgcgattctgtg
gaaacatgcaaacagaccctctcgcccagaccaacacgggatctggacca
ttccatgatcctgtaagcacatccttccatttagcataccccagattact
ggggctgttattagcatgtcgttcagcagcagagcgaccttccttttcca
attgcaaaaaatttaaggtaaaaagagctaaggagagtcttatctttggg
gtatggccatagcctattccccctttttgttttattaataattcttttaa
ggttctatgtgctcgttcaatgattccttggccttgaggattatatggca
ggccgtgtttaacttgtacttccatctgttgacaaaaagacaccagggtt
ttggcagtatatgccgggccattgtcttttttaagttgttggggcttacc
ccaagctgcccaggcctccaaacaatgctgtataacatgggaggcctttt
cccctgccatgggagatgcataaactattcctgaacatgtgtcaatgggt
acatgaacatatttcaatttgccaaattctgaaaaatgtgtcacatccat
ctgccacacctgtagagggagcaatcctctaggattcactccataagaag
gcgggtgttgaaactctaggcaatgtccacaggtagtgactacattcccg
agcttgtgctctagagattccaaattttctctgcagagtttagcattaac
atgaatttagaatgaaattgtgaggctactccataggggatgcta
gaattccatggcatatacagaacttacaaaatgtgcattgcccagagagg
gtggtgagacagatcacaccactggctgataggcgtgggtatgaggatcg
ttttttagtcatgtggacagctctggcccaaattcttcatttcactgaag
cctttgacaattccgttaaatttcaaccacattttatttgactgaactat
tccctgataacttaagaggaccagggctgtcagccctctcagcctttgct
gataatatcctggaacggagttagttttcaaaaccagggcaaagggaaac
ctcaatgtcttgagcaagaacagcaatgctgattcaaagagggaagcaaa
cctttatttacagagatgtatgccctggcaggaagagccaacattcaatg
gtgaactttatcctacatggcagagcttaccaattttcacctatgcccac
aggaacagccaggatgtgatgactaactttattgtccaatattacccagg
ctcactcacatctaagcacctgtttggcagacgagatgctgacaattacc
ccatcttagcagagagactcggctttgagggaaagtatgttggctgagtt
cacaccctcctgaggcagcagagaagacagaccttctgagagctttctcc
agaggcctctactccctaacaagccttcattccatagtttcgtcctgaac
agagggtaactgtttgtatttgaatgaaggacacttacctgggatttgga
gatgtcccttttgtcttagttagggttactatcgctatgatgaaacacca
tgaccaaaagcaacttggggaagaaaaggtttatttggcttacacttcca
cactgttgtccatcattgaaggaagtcaggacaggaactcaaacaggccc
agacctggagtcaggagctgcactaggcatagcatgtctactccacgacc
atcatagagtagactactgaagcctgctagtcttgccagtgaagcagact
acacagagagagtagatctatggcaatgttatgtgacacacactctatat
gaagggtatggaccctcactaggacttcaggccaatcacctttcttcttc
tactgatcttggaactagaatgtacttacagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6272481_6273086
seq2: B6Ng01-088F17.b_47_641

seq1  GAATTCACAGTGACAATCGCCGAGCGAAGCTCATTCATCTTGCCATCAAA  50
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  GAATTCACAGTGACAATTGCCGAGCGAAGCTCATTCGTCTTGCCATCAAA  50

seq1  ATTTACAGTCCAATTTCTTAACAGGAATTTCTTAACAGGAAGCATCATGA  100
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTTGCAGTCCAATTTCTTAACA-GAATTTCTTAACAGGAAGCATCATGA  99

seq1  CGAAGAGGCATCTGCTTGGGAAACACCGACAGTATCCCCCATCTGGGTTC  150
      ||||||||||      | |||||| | |||||||||||||||||||||||
seq2  CGAAGAGGCA------TTGGAAACGCTGACAGTATCCCCCATCTGGGTTC  143

seq1  TGCACCAATCAGGGGCAGACACATGGTCATCACCAGCAAGATCAGCTTCT  200
       ||||| ||  |||||||||||||| ||||||||||||||||||||||||
seq2  CGCACCCAT--GGGGCAGACACATGCTCATCACCAGCAAGATCAGCTTCT  191

seq1  TCATTTTGACAGCGTCACACTAGCTGCTCCAGAACCCACACTGGCTCTGC  250
      ||||||||||| | |  ||||||||||||| |||||||||||||||||  
seq2  TCATTTTGACAACATTGCACTAGCTGCTCCGGAACCCACACTGGCTCT--  239

seq1  GCGATTCTGTGGAAACATGCAAACAAACCCTCCCACCCAGGCCAACATGG  300
      ||||||||||||||||||||||||| |||||| | ||||| |||||| ||
seq2  GCGATTCTGTGGAAACATGCAAACAGACCCTCTCGCCCAGACCAACACGG  289

seq1  GATCCGGACCATTCCATGATCCTGTAAGCACATCCTTCCATTTAGCATAC  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGACCATTCCATGATCCTGTAAGCACATCCTTCCATTTAGCATAC  339

seq1  CCCAGTTTACTGGGGCTGGTATTAGCATGTCATTCAGCAGCAGAGCGACC  400
      ||||| |||||||||||| |||||||||||| ||||||||||||||||||
seq2  CCCAGATTACTGGGGCTGTTATTAGCATGTCGTTCAGCAGCAGAGCGACC  389

seq1  TTCCTTATCCAATTGTAAAAAATTTAAGGTAAAAAGAGCTAAGGAGAGTC  450
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCCAATTGCAAAAAATTTAAGGTAAAAAGAGCTAAGGAGAGTC  439

seq1  TTATCTTTGGGGTATGGCCATAGCCTATTCCCCCTTTTTGTTTTATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGGGGTATGGCCATAGCCTATTCCCCCTTTTTGTTTTATTAAT  489

seq1  AATTCTTTTAAGGTTCTATGTGCTCGTTCAATGATTCCTTGGCCTTGAAG  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATTCTTTTAAGGTTCTATGTGCTCGTTCAATGATTCCTTGGCCTTGAGG  539

seq1  ATTATATGGCAGGTCATGTTTAACTTGTACTTCCACCTGTTGACAAAAAG  600
      ||||||||||||| | ||||||||||||||||||| ||||||||||||||
seq2  ATTATATGGCAGGCCGTGTTTAACTTGTACTTCCATCTGTTGACAAAAAG  589

seq1  ACACCA  606
      ||||||
seq2  ACACCA  595

seq1: chr6_71134514_71135659
seq2: B6Ng01-088F17.g_67_1199 (reverse)

seq1  TCCTGTATGTACATTCTAGTGTCTCCAAGATCATGTAAGAAGAAGAAGGG  50
      ||||||| ||||||||||||   |||||||||| || |||||||||| ||
seq2  TCCTGTAAGTACATTCTAGT---TCCAAGATCA-GT-AGAAGAAGAAAGG  45

seq1  TGTATTGG-CTGGAGTCCTAGGTGAGGGTCCCATACCC-TCATATAGAGT  98
      || ||||| ||| ||||||| |||||||| |||||||| |||||||||||
seq2  TG-ATTGGCCTGAAGTCCTA-GTGAGGGT-CCATACCCTTCATATAGAGT  92

seq1  GTTGTGGTCACATTAACATTGCCATAGATCTAACTCTCTCTGTGTAGTTC  148
      | ||| |||||| |||||||||||||||||| ||||||||||||||||  
seq2  G-TGT-GTCACA-TAACATTGCCATAGATCT-ACTCTCTCTGTGTAGT--  136

seq1  TTGCTTCACTGGCAAGACTAGCAGGCTTCAGTAGTCTACTCTATGATGGT  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCACTGGCAAGACTAGCAGGCTTCAGTAGTCTACTCTATGATGGT  186

seq1  CGTGGAGTAGACATGCTATGCCTAGTGCAGCTCCTGACTCCAGGTTCTGG  248
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGTGGAGTAGACATGCTATGCCTAGTGCAGCTCCTGACTCCAGG-TCTGG  235

seq1  GCCTGTTTGAGTTCCTGTCCTGACTTCCTTCAATGATGGACAACAGTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTGAGTTCCTGTCCTGACTTCCTTCAATGATGGACAACAGTGTG  285

seq1  GAAGTGTAAGCCAAATAAACCTTTTCTTCCCCAAGTTGCTTTTGGTCATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTAAGCCAAATAAACCTTTTCTTCCCCAAGTTGCTTTTGGTCATG  335

seq1  GTGTTTCATCATAGCGATAGTAACCCTAACTAAGACAAAAGGGACATCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCATCATAGCGATAGTAACCCTAACTAAGACAAAAGGGACATCTC  385

seq1  CAAATCCCAGGTAAGTGTCCTTCATTCAAATACAAACAGTTACCCTCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGGTAAGTGTCCTTCATTCAAATACAAACAGTTACCCTCTGT  435

seq1  TCAGGACGAAACTATGGAATGAAGGCTTGTTAGGGAGTAGAGGCCTCTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACGAAACTATGGAATGAAGGCTTGTTAGGGAGTAGAGGCCTCTGG  485

seq1  AGAAAGCTCTCAGAAGGTCTGTCTTCTCTGCTGCCTCAGGAGGGTGTGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTCTCAGAAGGTCTGTCTTCTCTGCTGCCTCAGGAGGGTGTGAA  535

seq1  CTCAGCCAACATACTTTCCCTCAAAGCCGAGTCTCTCTGCTAAGATGGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCAACATACTTTCCCTCAAAGCCGAGTCTCTCTGCTAAGATGGGG  585

seq1  TAATTGTCAGCATCTCGTCTGCCAAACAGGTGCTTAGATGTGAGTGAGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCAGCATCTCGTCTGCCAAACAGGTGCTTAGATGTGAGTGAGCC  635

seq1  TGGGTAATATTGGACAATAAAGTTAGTCATCACATCCTGGCTGTTCCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATATTGGACAATAAAGTTAGTCATCACATCCTGGCTGTTCCTGT  685

seq1  GGGCATAGGTGAAAATTGGTAAGCTCTGCCATGTAGGATAAAGTTCACCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAGGTGAAAATTGGTAAGCTCTGCCATGTAGGATAAAGTTCACCA  735

seq1  TTGAATGTTGGCTCTTCCTGCCAGGGCATACATCTCTGTAAATAAAGGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTTGGCTCTTCCTGCCAGGGCATACATCTCTGTAAATAAAGGTT  785

seq1  TGCTTCCCTCTTTGAATCAGCATTGCTGTTCTTGCTCAAGACATTGAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCTCTTTGAATCAGCATTGCTGTTCTTGCTCAAGACATTGAGGT  835

seq1  TTCCCTTTGCCCTGGTTTTGAAAACTAACTCCGTTCCAGGATATTATCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTGCCCTGGTTTTGAAAACTAACTCCGTTCCAGGATATTATCAG  885

seq1  CAAAGGCTGAGAGGGCTGACAGCCCTGGTCCTCTTAAGTTATCAGGGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGAGAGGGCTGACAGCCCTGGTCCTCTTAAGTTATCAGGGAAT  935

seq1  AGTTCAGTCAAATAAAATGTGGTTGAAATTTAACGGAATTGTCAAAGGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTCAAATAAAATGTGGTTGAAATTTAACGGAATTGTCAAAGGCT  985

seq1  TCAGTGAAATGAAGAATTTGGGCCAGAGCTGTCCACATGACTAAAAAACG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAATGAAGAATTTGGGCCAGAGCTGTCCACATGACTAAAAAACG  1035

seq1  ATCCTCATACCCACGCCTATCAGCCAGTGGTGTGATCTGTCTCACCACCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATACCCACGCCTATCAGCCAGTGGTGTGATCTGTCTCACCACCC  1085

seq1  TCTCTGGGCAATGCACATTTTGTAAGTTCTGTATATGCCATGGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCAATGCACATTTTGTAAGTTCTGTATATGCCATGGAATTC  1133