BAC Information

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BAC

Clone NameB6Ng01-088I22
ChromosomeY (Build37)5 (Build37)
Map Location 1,120,586 - 1,121,0358,213,961 - 8,214,739
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I22.bB6Ng01-088I22.g
ACCDH901377DH901378
length1,0221,202
definitionDH901377|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I22, 5' end.DH901378|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,121,035)(8,213,961 - 8,214,739)
sequence
gaattctactctaaaaaccatctggccctgggctgttgttgttgtgagac
tttttttttccattttttattaggtatttagctcatttacatttccaatg
ctataccaaaagtcccccatagccacccacccccactcccctacccatcc
actccccttttttggccctggcgttcccctgtactggggcatataaagtt
tgcgtgtccaatgggcctctctttccagtgatggccgcctaggccatctt
ttgatacatatgcagctagagtcaagaactccggggtactggttagttca
taatgttgttccacctatagggttgcagatccctttagcttcttgggtac
tttctctagctccttcattggggaccatgtgatccatccaatagccgact
gtgagcatccacttctatgtttgctaggcccaggcatactctgacaagag
acagctatatcagggtcctttcagcataatcttgctagtgtatgcaatgg
tgtcagcatttggaagttgattatgggatggatccccggatatggcagtc
tctacatggtccatctttttatctcagctccaaactttgtctctgtacct
ccttccaagggtgttttgttcccacttctaaggaggggcatagtgtccac
acttcagtcttcatttttcttgagtttcatgtgtttaggaaattgtatct
tatatcttggatatcctaggttttgggctaatatccacttatcagtgagt
acatattgtgtgagttcctttgtgaatgtgttacctcactcaggatgatg
ccctccaggtccatccatttggctaggaatttcaaaaattcattcttttt
aatagctgagtagtactccattgtgtagatgtaccacaatttctgtatcc
attcctctgttgaggggcatctgggttcctcccagcttctggctattata
aatagctgctatgaacatagtggagcatgttgtccttcttaccatttggg
gcatctttctggaaatatgccc
gaattcatagatacagggggaactttcataaacagaactccaatggctta
tgctctaaaattaacaattgatgaatgtgacttcatgaaactggaaagct
tctgtaaggcaaaggacatagtcgagaaaacaaatcagcaacatacagat
taggaaaaaaaaatcttccctaaccccacatctgagagagggccaatatc
caaaatatataaagaactcaagaagctaaccatgaaaaaaccaaacaacc
caatcaaaacgtggggtatagaactaaaccaaagatttacaactgaggaa
tcttgaatggctgagaaactcgtaaagaaatgttcaaagtccttagtgat
cagataatgcaaatcaaaatgatcctggaattcccttccactttacacaa
atcagaatggctaagatcaaaaccacaagtgacaacacatgttggagagg
atgtgtagaaagaggagcattcctccattgcgggtgggatcgcaaactga
cacaaccactctggaaatcaatctagaggttcctcagaaaattggaaata
gatctacctgaagacccagcaaaaccactcttgagaatatacccaaaaga
tgccccaccatgccacaagggcacgtgttccactacgttcatagtggcct
tatttgtgatagccagaagctggaaataacctagatgtcccatgacagaa
gaatggatacagaaaatgtgttcatttacacaatgaaatactactcagct
attaagaacaaggacatcctgagttttgcagcccaaatgaatggaactag
aaaataacatcctgagtgagacccaaaagaacatgcatagtaagtactca
ctaataagtggatattaaaaaaaaagtacagaatacccaaaaaaagtatc
ttattaattaattattttatttatttatatccaaatgttgcctcacccag
tctcccttgaagagttatttcttccattaccccacccccaccccccactt
agactcaatggttctatcgagaaaaagactacataaaatcattctaatag
caaatttccccctaaagaacagcaaactaaaaaaattatgtgatggttta
aagcatatacggaagggctaatttctaggaactgtgaactcgaacttagc
gatacttctatgagtctaaggctaccaatggccattgggaccagcaagct
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121035
seq2: B6Ng01-088I22.b_93_542

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||| |||||||||||||||||||| |||| ||
seq2  CTATACCAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACCCATCC  100

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  150
      ||||||| |||||||||||||  |||||||||||||||||||||||||||
seq2  ACTCCCCTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTT  150

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200
      |||  |||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGCCTAGGCCATCTT  200

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  250
      |||||| |||||||||||||||||||| |||||||||||||||||| |||
seq2  TTGATACATATGCAGCTAGAGTCAAGAACTCCGGGGTACTGGTTAGTTCA  250

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  300
      ||| ||||||||||||||||||||| |||||||||||||| ||||| |||
seq2  TAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTTCTTGGGTAC  300

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  350
      |||||||||||||| |||||||  || | ||||||||||| |||| ||||
seq2  TTTCTCTAGCTCCTTCATTGGGGACCATGTGATCCATCCAATAGCCGACT  350

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  400
      |||||||||||||||| |||||||| ||||| |||||| ||| |||||||
seq2  GTGAGCATCCACTTCTATGTTTGCTAGGCCCAGGCATACTCTGACAAGAG  400

seq1  ACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGG  450
      ||||||| ||| |  ||||||||  | |||||||||||||||||||||||
seq2  ACAGCTATATCAGGGTCCTTTCAGCATAATCTTGCTAGTGTATGCAATGG  450

seq1: chr5_8213961_8214739
seq2: B6Ng01-088I22.g_524_1268

seq1  GAAAGAGGAGCATTCCTCCATTGCGGGTGGGATCGCAAACTGACACAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGAGCATTCCTCCATTGCGGGTGGGATCGCAAACTGACACAACC  50

seq1  ACTCTGGAAATCAATCTAGAGGTTCCTCAGAAAATTGGAAATAGATCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGAAATCAATCTAGAGGTTCCTCAGAAAATTGGAAATAGATCTAC  100

seq1  CTGAAGACCCAGCAAAACCACTCTTGAGAATATACCCAAAAGATGCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACCCAGCAAAACCACTCTTGAGAATATACCCAAAAGATGCCCCA  150

seq1  CCATGCCACAAGGGCACGTGTTCCACTACGTTCATAGTGGCCTTATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCACAAGGGCACGTGTTCCACTACGTTCATAGTGGCCTTATTTGT  200

seq1  GATAGCCAGAAGCTGGAAATAACCTAGATGTCCCATGACAGAAGAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCAGAAGCTGGAAATAACCTAGATGTCCCATGACAGAAGAATGGA  250

seq1  TACAGAAAATGTGTTCATTTACACAATGAAATACTACTCAGCTATTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAATGTGTTCATTTACACAATGAAATACTACTCAGCTATTAAGA  300

seq1  ACAAGGACATCCTGAGTTTTGCAG-CCAAATGAATGGAACTAGAAAATAA  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACAAGGACATCCTGAGTTTTGCAGCCCAAATGAATGGAACTAGAAAATAA  350

seq1  CATCCTGAGTGAGACCCAAAAGAACATGCATAGTAAGTACTCACTAATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAGTGAGACCCAAAAGAACATGCATAGTAAGTACTCACTAATAA  400

seq1  GTGGATATTAAAAAAAAAGTACAGAATACCCAAAAAAAGTATCTTATTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATTAAAAAAAAAGTACAGAATACCCAAAAAAAGTATCTTATTAA  450

seq1  TTAATTATTTTATTTATTTATATCCAAAATGTTGCCTCCAACCCAGTTCT  499
      ||||||||||||||||||||||||| ||||||||||||  |||||| |||
seq2  TTAATTATTTTATTTATTTATATCC-AAATGTTGCCTC--ACCCAG-TCT  496

seq1  CCCTTGAAGAGTTATTTCTCCCATTACCCCACCCCCACCCCCCACCTTAG  549
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CCCTTGAAGAGTTATTTCTTCCATTACCCCACCCCCACCCCCCA-CTTAG  545

seq1  ACTCAATGGTTCTTATCAGAGAAAAAGACCTACATAAAATCATTCCTATA  599
      |||||||||||| |||| |||||||||| ||||||||||||||||  |||
seq2  ACTCAATGGTTC-TATC-GAGAAAAAGA-CTACATAAAATCATTCTAATA  592

seq1  GCAAAATTTCCCACCCAAAAGAAACAAGCAAAACTAAAAAAATATATTGT  649
      || ||||||||  ||| ||||||   ||| ||||||||||||| || |||
seq2  GC-AAATTTCC--CCCTAAAGAA--CAGC-AAACTAAAAAAAT-TA-TGT  634

seq1  GATATGTATAAAAGCA-ATAAGGAAGGAGTTAATATTACTAGGAGACTGT  698
      |  |||  | |||||| ||| |||||| | ||  ||| |||||| |||||
seq2  G--ATGGTTTAAAGCATATACGGAAGG-GCTA--ATTTCTAGGA-ACTGT  678

seq1  GAACATCACAAACTATAAGCAGATAACTTTCTCATGAGCTCT-AGGCTTA  747
      |||   | | |||  | ||| ||||   |||| ||||| ||| |||||  
seq2  GAA---CTCGAAC--TTAGC-GATA--CTTCT-ATGAG-TCTAAGGCT--  716

seq1  ACAAATGGCCCACTGGGGACACAGCAAGCTTA  779
      || |||||||   | ||||| |||||||||||
seq2  ACCAATGGCC--ATTGGGAC-CAGCAAGCTTA  745