BAC Information

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BAC

Clone NameB6Ng01-088K05
Chromosome5 (Build37)
Map Location 43,994,644 - 44,192,550
singlet/doubletdoublet
Overlap geneC1qtnf7, 5730509K17Rik, Fbxl5
Upstream geneLOC433883, EG665934, Cpeb2, 4833430A08Rik
Downstream geneBst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088K05.bB6Ng01-088K05.g
ACCDH901438DH901439
length1,136143
definitionDH901438|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K05, 5' end.DH901439|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,994,644 - 43,995,789)(44,192,408 - 44,192,550)
sequence
ggaattctataactaaaagaatcacatgctactttgatctacatcctgcc
ttaaagagtcgaaggacatagttacataaaattgttgttatatgcatgtt
tttaaaggcatgatttaaaatctaaaaacctgtcatttcgttatccctaa
agaaaaagctaagataggaaatcgtttccatttagcattcagggcctgtt
taagattagcattatatgcagagctttgattttctaagaccaaagaagca
taaaagcagggaggaaaaaaaaaacatgtcagtatatattctacataaat
ttgcataattcaagccaatgcgtgaaagtgtatgcaggagaggggactgc
taatggaaaggttttctcctgagatttaaaatatagtctaaggttggatt
ataatgtgtattgagttgtatactttgattagttttatgctgtgcaaatt
acatcttttcaagctgtccaaaatcattataatgtaaagttttgactcat
gaggtttagtctcagtcaaaacaagcaaattccttgcgatgctttaaact
ttgagcttatatgaaaatggattgttcaggagatggtgttgtaaatgtgc
agttgtatcgctacctcgtcacttttaattagaaagagcctagtggacca
aatttttgtatgtgataaaatgagatgggagaacaaaaatcaatgtcaaa
ttatttttagtatcatggagtgggaaaatattctaaacataataaattag
actttagaaaatgttttagtgataaaattattttaaatgtacattaaaaa
gtgaaaataaaagctggagaggtgtctcagggtttaagagtcttcctgat
ctttcaaagaaccctgagttgcttacaccacccatgttaagctcacaact
gacaatgaatcttggctccagggatcaaacatctctagcctgttcaagct
cttgcagtcagatatgtgcacttacacatagacacacgtattaaaaataa
aattagagaaacctagaaaatatttcctatatttgtcatgagcatatgag
accagtaaaataaatatttataaagtagcattataataacaaaggaatga
actactcaggtgttcattggtgggaactagtaatgt
catatgttttggtcatattcttttccctcccccaactcctccctgatact
accctacctccctacctactcaaattcatgttctttctcattccaaaaag
gaaaggaaaggaaaggaaaggaaagggggaggggaggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43994644_43995789
seq2: B6Ng01-088K05.b_48_1182

seq1  GAATTCTATAACTAAAAGAATCACATGCTACTTTGATCTACATCCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAACTAAAAGAATCACATGCTACTTTGATCTACATCCTGCCT  50

seq1  TAAAGAGTCGAAGGACATAGTTACATAAAATTGTTGTTATATGCATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTCGAAGGACATAGTTACATAAAATTGTTGTTATATGCATGTTT  100

seq1  TTAAAGGCATGATTTAAAATCTAAAAACCTGTCATTTCGTTATCCCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCATGATTTAAAATCTAAAAACCTGTCATTTCGTTATCCCTAAA  150

seq1  GAAAAAGCTAAGATAGGAAATCGTTTCCATTTAGCATTCAGGGCCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCTAAGATAGGAAATCGTTTCCATTTAGCATTCAGGGCCTGTTT  200

seq1  AAGATTAGCATTATATGCAGAGCTTTGATTTTCTAAGACCAAAGAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGCATTATATGCAGAGCTTTGATTTTCTAAGACCAAAGAAGCAT  250

seq1  AAAAGCAGGGAGGAAAAAAAAAACATGTCAGTATATATTCTACATAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGGGAGGAAAAAAAAAACATGTCAGTATATATTCTACATAAATT  300

seq1  TGCATAATTCAAGCCAATGCGTGAAAGTGTATGCAGGAGAGGGGACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTCAAGCCAATGCGTGAAAGTGTATGCAGGAGAGGGGACTGCT  350

seq1  AATGGAAAGGTTTTCTCCTGAGATTTAAAATATAGTCTAAGGTTGGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAGGTTTTCTCCTGAGATTTAAAATATAGTCTAAGGTTGGATTA  400

seq1  TAATGTGTATTGAGTTGTATACTTTGATTAGTTTTATGCTGTGCAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTATTGAGTTGTATACTTTGATTAGTTTTATGCTGTGCAAATTA  450

seq1  CATCTTTTCAAGCTGTCCAAAATCATTATAATGTAAAGTTTTGACTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTCAAGCTGTCCAAAATCATTATAATGTAAAGTTTTGACTCATG  500

seq1  AGGTTTAGTCTCAGTCAAAACAAGCAAATTCCTTGCGATGCTTTAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGTCTCAGTCAAAACAAGCAAATTCCTTGCGATGCTTTAAACTT  550

seq1  TGAGCTTATATGAAAATGGATTGTTCAGGAGATGGTGTTGTAAATGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTATATGAAAATGGATTGTTCAGGAGATGGTGTTGTAAATGTGCA  600

seq1  GTTGTATCGCTACCTCGTCACTTTTAATTAGAAAGAGCCTAGTGGACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATCGCTACCTCGTCACTTTTAATTAGAAAGAGCCTAGTGGACCAA  650

seq1  ATTTTTGTATGTGATAAAATGAGATGGGAGAACAAAAATCAATGTCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTATGTGATAAAATGAGATGGGAGAACAAAAATCAATGTCAAAT  700

seq1  TATTTTTAGTATCATGGAGTGGGAAAATATTCTAAACATAATAAATTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGTATCATGGAGTGGGAAAATATTCTAAACATAATAAATTAGA  750

seq1  CTTTAGAAAATGTTTTAGTGATAAAATTATTTTAAATGTACATTAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAATGTTTTAGTGATAAAATTATTTTAAATGTACATTAAAAAG  800

seq1  TGAAAATAAAAGCTGGAGAGGTGTCTCAGGGTTTAAGAGTCTTCCTGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAAAGCTGGAGAGGTGTCTCAGGGTTTAAGAGTCTTCCTGATC  850

seq1  TTTCAAAGAACCCTGAGTTGCTTACACCACCCATGTTAAGCTCACAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGAACCCTGAGTTGCTTACACCACCCATGTTAAGCTCACAACTG  900

seq1  ACAATGAATC-TGGCTCCAGGGATCAAACATCTCTAGCCTGTTCAGGCTC  949
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  ACAATGAATCTTGGCTCCAGGGATCAAACATCTCTAGCCTGTTCAAGCTC  950

seq1  TTGCAGTCAGATATGTGCACTTACACATAGACACACGTAATTAAAAATAA  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGCAGTCAGATATGTGCACTTACACATAGACACACGT-ATTAAAAATAA  999

seq1  AATAAGAAGAAAACCTAGGAAAATATTTCCTATATTTGTCATGAAGCATA  1049
      ||| |||   ||||||| ||||||||||||||||||||||||| ||||||
seq2  AATTAGA--GAAACCTA-GAAAATATTTCCTATATTTGTCATG-AGCATA  1045

seq1  TGAGACCAGTAAATATAAATATTTATTATAGTAGCAATTATAATAACAAA  1099
      ||||||||||||| ||||||||||| || |||||| ||||||||||||||
seq2  TGAGACCAGTAAA-ATAAATATTTA-TAAAGTAGC-ATTATAATAACAAA  1092

seq1  GGAATGAAACTACCTCAAGTGTCCATTGGTGGGACACTAGTTAATGT  1146
      |||||| ||||| |||| |||| ||||||||||| ||||| ||||||
seq2  GGAATG-AACTA-CTCAGGTGTTCATTGGTGGGA-ACTAG-TAATGT  1135

seq1: chr5_44192408_44192550
seq2: B6Ng01-088K05.g_74_216 (reverse)

seq1  TCCTCCCCTCCCCTCCCCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCTCCCCTCCCCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTTTG  50

seq1  GAATGAGAAAGAACATGAATTTGAGTAGGTAGGGAGGTAGGGTAGTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGAAAGAACATGAATTTGAGTAGGTAGGGAGGTAGGGTAGTATCA  100

seq1  GGGAGGAGTTGGGGGAGGGAAAAGAATATGACCAAAACATATG  143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGTTGGGGGAGGGAAAAGAATATGACCAAAACATATG  143