BAC Information

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BAC

Clone NameB6Ng01-089C19
Chromosome5 (Build37)
Map Location 56,183,194 - 56,184,354
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089C19.bB6Ng01-089C19.g
ACCDH901820DH901821
length1,1471,246
definitionDH901820|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C19, 5' end.DH901821|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctaggctggcaagacttctaatttatatcccaattaggggac
tcttttgtagctacaaattccctaatgctcaagagatgagagatagaata
tataggtcacaagtttgagagtgatccagttatgagaaggaagataagga
cagcaggaagccagctgctaacatatgcagcatcctgcccttttcttgcc
acacaggtcagacccagtagagactgagccaggttttatacatggatggg
ttaatagctggattgcaataattttgtttgctggcaaacagatgtaattt
gtagaatatcaaaacaaattggtatgttggattccagagtttctttgatg
tgaccctttccaaaacgaaatcctgcaactgctaccaaaaactaaagtga
aagaaatgaaaatcaagcaacaactgtgcaaacaaacagagccaaatgag
aaaaatcaaaaaaagaaaaagaaagaaaaaaatgagggatggctgtaaaa
acattgttttcctgtcaaaaggaaaggagcaacattccacacataataaa
aataatctctgtgttgcttaaaagggcatcaatgcagggcttggcatttg
caaggaaagtgtctcatttccatcaacaaggcaagctcctaattcacaaa
tgtacacagtgggtgacgcgagttaatagcactcttagcatccgataatg
tggtgcagttaatgtatctcagcttgaattaactttaccacaagccattg
tttcctttttatacagcacaaggtcctgtggaaaaatctcttccaatctc
acacggggaattcaattaacattacttgctactgtactgcaatacagaaa
tggaggcgattttaacctttcttgagtttcccgctgatcaattcaatgct
tttcattagtttaactccgggtaccataacttcagattcattgttcagaa
aacacttcttttctcttgcacagcagatgtccccacattgagagctctgc
agagtagactgaactggtaatggtatttgattcaggactgactttttgtt
ctttgttagctcctcagctgagcaagttgagccagacttgactttgctgc
tttaagagattacttaagtgggagctttctcctagattactcattgt
gaattcccctggactggggcatcaaatctgcacaggaacaagggcctctt
ctcactttgatgttgaagaaggccatcctctactacatacggggctggag
atatgggtctctccatgtataatccttggttggtggtttagactctggga
gctctgaagcaactggttggttgatactattgttcttcctatggggatgc
aaagccccccatatcttggtcatccttgttcttgagcttcatgtggtctg
tgaattgtatcttgggtattctgatcatttaggctaatatctacttatca
gtaagtgcataccatgtgtattcttttgtgactagataacctcactcagg
ataatactttctagttctgaccatttgcctaagattttcatgaagtcatt
tattttttaatagcttagtaatactctattgtataaatgtaccacatttt
ctgtattcatttctctgttgagggacatctgggtggattccagcttcttg
ttattataaatatggctgctctgaacagagtggagcatgtgtcctagtta
tatattggagcattttcttttgtgtatatgcccagcagtggtctagctct
gaggaatcaccagactgatttccagagtgtctgtaccagcttgtaatacc
actaataatggaagagtattcctctttctccacattcttttttaaaaaaa
catttttattagataattttttatttacattccaaatgttatccctttcc
tagtttcccctctgaaaatcccctatccctttaactgctctcattgctcc
ccaacccacctcctcctgctttctggccttggcattcacctatagtgggg
catagaaccttcacaggaccaagggcctctcctaccattgatgactgatt
aggtcatttctgctacatatacagctagagctattgtcccatatgggttt
tctttgattggtgtttagtccagggaactctagagtactgctagttcata
atgttcttcctctatggggctgaaccacttcaacttcttgggtatttttc
ttagttcctttattgggaacgtggtgctttcccatggaatggctgtgagg
aactccactctgtattgtcatgactgggagatacaggaggacagctaaca
ggcctctggtcagcatgacacaggtgctcgcaaatgtctagtgggtggtg
ttatggagagaatacccaaggacgagacttggagagtgacataact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56183194_56184354
seq2: B6Ng01-089C19.b_45_1191 (reverse)

seq1  ACAATAGAGTGATCTAGGGAGAAAGGCTCCACCCTAGGTAATCTCCTTAA  50
      ||||| |||| ||||| ||||||| |||||  | || ||||||| |||||
seq2  ACAAT-GAGTAATCTA-GGAGAAA-GCTCCCACTTAAGTAATCT-CTTAA  46

seq1  AGGCAGCAAAGTCAAGGTCTGGCTCAACTTGCTTCAGGCTGGAGGAGGCT  100
      | ||||||||||||| |||||||||||||||| ||| ||| ||||||   
seq2  A-GCAGCAAAGTCAA-GTCTGGCTCAACTTGC-TCA-GCT-GAGGAGCTA  91

seq1  ACAAAGGAC-AAAAGTCAGTCCTGGATTCAAATACCCATTAACCAGTTCA  149
      |||||| || ||||||||||||| || ||||||| ||||| |||||||||
seq2  ACAAAGAACAAAAAGTCAGTCCT-GAATCAAATA-CCATT-ACCAGTTCA  138

seq1  GTCTACTCTGCAGAGCTTCTCAATGGTGGGGACATTCTGCTGTGCAAGAG  199
      |||||||||||||||| ||||||| ||||||||| |||||||||||||||
seq2  GTCTACTCTGCAGAGC-TCTCAAT-GTGGGGACA-TCTGCTGTGCAAGAG  185

seq1  AAAAGAAGTGTTTTCTGAACAATGAATCTGAGTTTATGGTAACCGGAGTT  249
      |||||||||||||||||||||||||||||||  |||||||| ||||||||
seq2  AAAAGAAGTGTTTTCTGAACAATGAATCTGAAGTTATGGTACCCGGAGTT  235

seq1  AAACTAATGGAAAGCATTGAATTGATCAGCGGGAAACTCAAGAAAGGTTA  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGAAAAGCATTGAATTGATCAGCGGGAAACTCAAGAAAGGTTA  285

seq1  AAATCGCCTCCATTTCTGTATTGCAGTACAGTAGCAAGTAATGTTAATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGCCTCCATTTCTGTATTGCAGTACAGTAGCAAGTAATGTTAATTG  335

seq1  AATTCCCCGTGTGAGATTGGAAGAGATTTTTCCACAGGACCTTGTGCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCGTGTGAGATTGGAAGAGATTTTTCCACAGGACCTTGTGCTGT  385

seq1  ATAAAAAGGAAACAATGGCTTGTGGTAAAGTTAATTCAAGCTGAGATACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGGAAACAATGGCTTGTGGTAAAGTTAATTCAAGCTGAGATACA  435

seq1  TTAACTGCACCACATTATCGGATGCTAAGAGTGCTATTAACTCGCGTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCACCACATTATCGGATGCTAAGAGTGCTATTAACTCGCGTCAC  485

seq1  CCACTGTGTACATTTGTGAATTAGGAGCTTGCCTTGTTGATGGAAATGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGTACATTTGTGAATTAGGAGCTTGCCTTGTTGATGGAAATGAG  535

seq1  ACACTTTCCTTGCAAATGCCAAGCCCTGCATTGATGCCCTTTTAAGCAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCCTTGCAAATGCCAAGCCCTGCATTGATGCCCTTTTAAGCAAC  585

seq1  ACAGAGATTATTTTTATTATGTGTGGAATGTTGCTCCTTTCCTTTTGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATTATTTTTATTATGTGTGGAATGTTGCTCCTTTCCTTTTGACA  635

seq1  GGAAAACAATGTTTTTACAGCCATCCCTCATTTTTTTCTTTCTTTTTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAATGTTTTTACAGCCATCCCTCATTTTTTTCTTTCTTTTTCTT  685

seq1  TTTTTGATTTTTCTCATTTGGCTCTGTTTGTTTGCACAGTTGTTGCTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATTTTTCTCATTTGGCTCTGTTTGTTTGCACAGTTGTTGCTTGA  735

seq1  TTTTCATTTCTTTCACTTTAGTTTTTGGTAGCAGTTGCAGGATTTCGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTCTTTCACTTTAGTTTTTGGTAGCAGTTGCAGGATTTCGTTT  785

seq1  TGGAAAGGGTCACATCAAAGAAACTCTGGAATCCAACATACCAATTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGGTCACATCAAAGAAACTCTGGAATCCAACATACCAATTTGTT  835

seq1  TTGATATTCTACAAATTACATCTGTTTGCCAGCAAACAAAATTATTGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTCTACAAATTACATCTGTTTGCCAGCAAACAAAATTATTGCAA  885

seq1  TCCAGCTATTAACCCATCCATGTATAAAACCTGGCTCAGTCTCTACTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTATTAACCCATCCATGTATAAAACCTGGCTCAGTCTCTACTGGG  935

seq1  TCTGACCTGTGTGGCAAGAAAAGGGCAGGATGCTGCATATGTTAGCAGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTGTGTGGCAAGAAAAGGGCAGGATGCTGCATATGTTAGCAGCT  985

seq1  GGCTTCCTGCTGTCCTTATCTTCCTTCTCATAACTGGATCACTCTCAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTGCTGTCCTTATCTTCCTTCTCATAACTGGATCACTCTCAAAC  1035

seq1  TTGTGACCTATATATTCTATCTCTCATCTCTTGAGCATTAGGGAATTTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCTATATATTCTATCTCTCATCTCTTGAGCATTAGGGAATTTGT  1085

seq1  AGCTACAAAAGAGTCCCCTAATTGGGATATAAATTAGAAGTCTTGCCAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAAAGAGTCCCCTAATTGGGATATAAATTAGAAGTCTTGCCAGC  1135

seq1  CTAGATGAATTC  1161
      ||||||||||||
seq2  CTAGATGAATTC  1147