BAC Information

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BAC

Clone NameB6Ng01-089D08
Chromosome5 (Build37)
Map Location 54,902,427 - 54,903,427
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D08.bB6Ng01-089D08.g
ACCDH901845DH901846
length1,254999
definitionDH901845|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D08, 5' end.DH901846|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttcagctctgagccccattttttaatggggttatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgatttaggataagtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacagtgtcttttgccttgcagaagctttgcaacttt
acgaggtcccatttagcgattctctatcttacagcacaagccattgctgt
tctattcaggaacttttcccctgtacccatatcttagggcttttccctac
tttctcctctataagtttcagtttctctggttttacgtggagttccttaa
tccacttagatttgaccttcgtacaagaagataggaatggctcaatttgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtaaaagatcaagt
gaccataggtgtgtgggttcatttctggttcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttagtacaattgc
tctgtagtacagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggtattttgttattccagatg
aatttgcagattgttctttctaattcattgaagaattgagttggaatttt
gatggggattgcactgaatctgtagattgcttttggcaagatagccattt
ttactatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagatacttgaagtcttatcatac
agatctttcacttccttagttagagtcacgccaagtatttatattatttg
tgactattgaagcttgtacagcacttctggaaatcagtctggaggtctca
gaaattgaacataagtactactgacgatcctgcaatacctcttctggcta
atccagaagatgttccaccggtaagaaggacactgctcacaatttcctag
caaccttattatatagcgaagctgaaggaacctagtgccctccataggaa
tgtatcgaaattggggtactttctacaggtatcatcgcatctaaatgata
ttgaatccatgcaatgatgcgcactcgggagtcattgctctcctgcgata
gtca
gaattctttctcttaccaattgtggagccctgaacaatgtttatgctttc
aacctttaaacttctttgctattaaaaagaaaaaagcaatgggggcaggc
ggtagtggcacacgcctttgatccccagaacttgggaggcagaggcaggc
agatttctgagttcgaggccagcctggtctacaaagtgaggtccaggaca
gccagagctacacagagaaaccctgtctcaataaacaaaaaagaaaaaaa
gaaaaataaacaaacaaaagtaatgggagttacagtgcctatcatattga
actgttataagacaaaaaggttattgcataaagattccttagtatattaa
ctggcatgtattgagaatttaatatttaaatacttgttctttttatggtt
tgaaatttaaaagtctgtatccttctcttgagaaatatccaattgcatag
caaaaaacaactagcctgcatacatctgcctcattcctgatgctggaatg
ccttagagaatggagacttattttgattgtgggtcctgctgatcttaatc
gctaggatgaaggctgagtgctaacaaggtcctttgccctactgagaact
ccatgcatgcaaggcggaactcagtgaagtctcaaatcagaacctctcct
tttcattaaaatgccaagtctgtaaaagaatatgcaataatcttaccctc
aactctttccgaaaagataagatgataattccttctttgcatcttgagaa
agagaaatgacaaaaccaagaaaggcatccatatttaggtgatcttatgt
acttcactgcatgttctactaggcattatcttccttgatcttcgagtcat
ctcatcaaataacgtatttccaatccactctgggatggttgatgacataa
cttatttatgtgtaaatattttctgatatgtaaaagatttataatccatt
gatccaatgagatcagggcactgctcattttagactgctagatctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54902427_54903427
seq2: B6Ng01-089D08.g_71_1061 (reverse)

seq1  CTAGCAGTCTACAAATGAGCAGTGCCCTTGGAATTCTCATTTGGAATTCA  50
      ||||||||||| ||||||||||||||||  ||  ||||| |||||  |||
seq2  CTAGCAGTCTA-AAATGAGCAGTGCCCT--GA--TCTCA-TTGGA--TCA  42

seq1  ATGGATTATAAATCCTTTTACATATTCAGAAAATATTTACACATAAATAA  100
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  ATGGATTATAAAT-CTTTTACATA-TCAGAAAATATTTACACATAAATAA  90

seq1  GTTATGTCATCAACCAT-CCAGAGTGGATTGGAAATACCTTATTTGATGA  149
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GTTATGTCATCAACCATCCCAGAGTGGATTGGAAATACGTTATTTGATGA  140

seq1  GATGACTCGAAGGATCAAGGAAGATAATGCCTAGTAGAACATGCAGTGAA  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCGAA-GATCAAGGAAGATAATGCCTAGTAGAACATGCAGTGAA  189

seq1  GTACATAAGATCACCTAAATATGGATGCCCTTCTTGGTTTTGTCATTTCT  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTACATAAGATCACCTAAATATGGATGCCTTTCTTGGTTTTGTCATTTCT  239

seq1  CTTTCTCAAGATGCAAAGAAGGAATTATCATCTTATCTTTTCGGAAAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAAGATGCAAAGAAGGAATTATCATCTTATCTTTTCGGAAAGAG  289

seq1  TTGAGGGTAAGATTATTGCATATTCTTTTACAGACTTGGCATTTTAATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTAAGATTATTGCATATTCTTTTACAGACTTGGCATTTTAATGA  339

seq1  AAAGGAGAGGTTCTGATTTGAGACTTCACTGAGTTCCGCCTTGCATGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGGTTCTGATTTGAGACTTCACTGAGTTCCGCCTTGCATGCAT  389

seq1  GGAGTTCTCAGTAGGGCAAAGGACCTTGTTAGCACTCAGCCTTCATCCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCTCAGTAGGGCAAAGGACCTTGTTAGCACTCAGCCTTCATCCTA  439

seq1  GCGATTAAGATCAGCAGGACCCACAATCAAAATAAGTCTCCATTCTCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTAAGATCAGCAGGACCCACAATCAAAATAAGTCTCCATTCTCTAA  489

seq1  GGCATTCCAGCATCAGGAATGAGGCAGATGTATGCAGGCTAGTTGTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCCAGCATCAGGAATGAGGCAGATGTATGCAGGCTAGTTGTTTTT  539

seq1  TGCTATGCAATTGGATATTTCTCAAGAGAAGGATACAGACTTTTAAATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCAATTGGATATTTCTCAAGAGAAGGATACAGACTTTTAAATTT  589

seq1  CAAACCATAAAAAGAACAAGTATTTAAATATTAAATTCTCAATACATGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATAAAAAGAACAAGTATTTAAATATTAAATTCTCAATACATGCC  639

seq1  AGTTAATATACTAAGGAATCTTTATGCAATAACCTTTTTGTCTTATAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATATACTAAGGAATCTTTATGCAATAACCTTTTTGTCTTATAACA  689

seq1  GTTCAATATGATAGGCACTGTAACTCCCATTACTTTTGTTTGTTTATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATATGATAGGCACTGTAACTCCCATTACTTTTGTTTGTTTATTTT  739

seq1  TCTTTTTTTCTTTTTTGTTTATTGAGACAGGGTTTCTCTGTGTAGCTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTCTTTTTTGTTTATTGAGACAGGGTTTCTCTGTGTAGCTCTG  789

seq1  GCTGTCCTGGACCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGACCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  839

seq1  CTGCCTGCCTCTGCCTCCCAAGTTCTGGGGATCAAAGGCGTGTGCCACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGCCTCCCAAGTTCTGGGGATCAAAGGCGTGTGCCACTA  889

seq1  CCGCCTGCCCCCATTGCTTTTTTCTTTTTAATAGCAAAGAAGTTTAAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCCCCCATTGCTTTTTTCTTTTTAATAGCAAAGAAGTTTAAAGG  939

seq1  TTGAAAGCATAAACATTGTTCAGGGCTCCACAATTGGTAAGAGAAAGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCATAAACATTGTTCAGGGCTCCACAATTGGTAAGAGAAAGAAT  989

seq1  TC  1001
      ||
seq2  TC  991