BAC Information

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BAC

Clone NameB6Ng01-089D22
Chromosome5 (Build37)
Map Location 57,622,948 - 57,726,072
singlet/doubletdoublet
Overlap geneLOC100041349, LOC666455
Upstream geneLOC100041335
Downstream geneLOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D22.bB6Ng01-089D22.g
ACCDH901873DH901874
length1,0651,135
definitionDH901873|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D22, 5' end.DH901874|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,725,022 - 57,726,072)(57,622,948 - 57,624,104)
sequence
gaattcattattaagcgtaccaaaccttaatttgagaatgtaaataaaga
actgttctgcctggcagtggtggcacacacctttaatcccagcactgcgg
aggcagaggcaggtggatttctgagttcaaggccagcctggtctacagag
tgagttccaggacagccagggctacatggagaaaccctgtcttgaaaaaa
cagaacaaaacaaaacaaaataaaacaaaacacaaaacaaaacaaaacaa
aacaaccaaaaacacagctggagcggtgtttccgtggataaggatgcttg
ttcttcttgcagaagaccagaggtcagttcccaaaacccacatttatatc
tggcagtctaagtgataccaaactggagcaccaggagatttgatgccccc
ttctgctctccaatggcaactccacatacatgcattcatgtgtaaatagt
aaaaataattaaactcaaatcgatcaatcatgatgcactttatatatccg
tgatatttatgatgtttaggcataaccatggataccacattttttggtat
tcctaccttttctctttattatatggtcttctgaactgtgaattcactgt
tttatattatttgccagagtgacaagattaaaagttttgttctacattga
atatgtctaacagttatattttcacacaaaagcaaaacttttaatataat
gtgattactataaaattttcattaccttatacatttttgaaagaattcac
agaatcttatattaagccgagtgtggttttggaaaataaacttgcccaca
ttatggtgtcatttggaatcagaagactcttaaagcttcaattagttcat
atatttgtatctttcctacttctaaatgtgtttcatacatgaatatacta
taaattaattcttgtcctatatgtgagtttataattgtaatgggaatttt
aggtggaagggttattacagattaaagccactagaaatgcctttatgcta
tattttaaatggaatgtggattaccacagccttgcatttcctggagctct
ctgaacccgaaggct
gaattcataatcaaaaagctttcatcattttaaatttatattgaatagag
atagctgggataagaggtttgagagaaggtggaagctttagaatgagctc
tgtatttttttatttttacaagtatatattcctatgttttggatggaaat
caacaacaattcttcaagactttcaaaccagctacaagcagttctcagac
ttagagtgtcttgttttgcttttaatttacatttagagtgcatcttgttg
taagtggtatgtagaactctcacgcgaatagaagaaatagcaaacagttt
atgcctctgaagctgctgcatgccgggcttattttatgttttggataaac
tgaagcaaggaagtttaataagtatatttatttttgagtttgtttgaagt
aattgaattgtgtcttgagtttgaaatctctggattgtttatttagatta
aaacattacagttaggatgactatataataagttatagtaattgccattc
agtggcatttttactctaggtaaatattgaatttggtctgtaagataagt
gctggatcttttacgaatgagacattaatttaccacctgattgctagcac
acagtatgatgtttttggttgttagcgaaggcctgtgccaattactttct
gaaaatgaagggcatgacagaagaacaaatatgaagacaataaagtacta
attaatataatgtattaactaatatgagcagcaaaataaaagtttaaaag
gcattagtaaaacataacataaacctcgaactatgtagtattttattatc
attttcttaatctgaactactcttagttactcaaatgttcctcatcttaa
gtgttttgaccagaaacatcatacctgggctctgaaactggcaaataatg
tattctaataagtttcataggagcttctcaggcatcaaccaactaaaaac
accccataagtgcaattaaacatatccttcccatgtccctccagaacacc
aaacatatcattatttatttttattgtctgctttgatgtagatttttact
atcaaatctagggaaatgaatagaattttctaattatttatgtagtgcaa
actcagccagaagctgcacccactttgtttaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57725022_57726072
seq2: B6Ng01-089D22.b_47_1111 (reverse)

seq1  AGCCTTC-GGATCAGAGAGCTC--AGAAATGC-ATGCTGTGGTATACCAC  46
      ||||||| || |||||||||||   ||||||| | |||||||||  ||||
seq2  AGCCTTCGGGTTCAGAGAGCTCCAGGAAATGCAAGGCTGTGGTAATCCAC  50

seq1  ATTC--ATTGAAATATAGCAT-AATGCATTTCTAGT-GCTCTAATCTGTA  92
      ||||   || ||||||||||| || ||||||||||| ||| |||||||||
seq2  ATTCCATTTAAAATATAGCATAAAGGCATTTCTAGTGGCTTTAATCTGTA  100

seq1  TTAACCTTTCCACCTAAAAT--CCATTACAATTAT-AACTCACATATA-G  138
       ||||| |||||||||||||  ||||||||||||| |||||||||||| |
seq2  ATAACCCTTCCACCTAAAATTCCCATTACAATTATAAACTCACATATAGG  150

seq1  ACAAGAATTAATTTATAGTATATTCATGTATGAAACACATTTAGAAGTAG  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATTAATTTATAGTATATTCATGTATGAAACACATTTAGAAGTAG  200

seq1  G-AAGATACAAATATATG-ACTAATTGAAGCTTTTAAGAGTCTTCTGATT  236
      | |||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  GAAAGATACAAATATATGAACTAATTGAAGC-TTTAAGAGTCTTCTGATT  249

seq1  CCAAATGACACCATAATGTGGGCAAGTTTATTTTCCAAAACCACACTCGG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGACACCATAATGTGGGCAAGTTTATTTTCCAAAACCACACTCGG  299

seq1  CTTAATATAAGATTCTGTGAATTCTTTC-AAAATGTATAAGGTAATGAAA  335
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTAATATAAGATTCTGTGAATTCTTTCAAAAATGTATAAGGTAATGAAA  349

seq1  ATTTTATAGTAATCACATTATATTAAAAGTTTTGCTTTTGTGTGAAAATA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGTAATCACATTATATTAAAAGTTTTGCTTTTGTGTGAAAATA  399

seq1  TAACTGTTAGACATATTCAATGTAGAACAAAACTTTTAATCTTGTCACTC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTAGACATATTCAATGTAGAACAAAACTTTTAATCTTGTCACTC  449

seq1  TGGCAAATAATATAAAACAGTGAATTCACAGTTCAGAAGACCATATAATA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATAATATAAAACAGTGAATTCACAGTTCAGAAGACCATATAATA  499

seq1  AAGAGAAAAGGTAGGAATACCAAAAAATGTGGTATCCATGGTTATGCCTA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAGGTAGGAATACCAAAAAATGTGGTATCCATGGTTATGCCTA  549

seq1  AACATCATAAATATCACGGATATATAAAGTGCATCATGATTGATCGATTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATAAATATCACGGATATATAAAGTGCATCATGATTGATCGATTT  599

seq1  GAGTTTAATTATTTTTACTATTTACACATGAATGCATGTATGTGGAGTTG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAATTATTTTTACTATTTACACATGAATGCATGTATGTGGAGTTG  649

seq1  CCATTGGAGAGCAGAAGGGGGCATCAAATCTCCTGGTGCTCCAGTTTGGT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGAGAGCAGAAGGGGGCATCAAATCTCCTGGTGCTCCAGTTTGGT  699

seq1  ATCACTTAGACTGCCAGATATAAATGTGGGTTTTGGGAACTGACCTCTGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTAGACTGCCAGATATAAATGTGGGTTTTGGGAACTGACCTCTGG  749

seq1  TCTTCTGCAAGAAGAACAAGCATCCTTATCCACGGAAACACCGCTCCAGC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCAAGAAGAACAAGCATCCTTATCCACGGAAACACCGCTCCAGC  799

seq1  TGTGTTTTTGGTTGTTTTGTTTTGTTTTGTTTTGTGTTTTGTTTTATTTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTGGTTGTTTTGTTTTGTTTTGTTTTGTGTTTTGTTTTATTTT  849

seq1  GTTTTGTTTTGTTCTGTTTTTTCAAGACAGGGTTTCTCCATGTAGCCCTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTCTGTTTTTTCAAGACAGGGTTTCTCCATGTAGCCCTG  899

seq1  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAT  949

seq1  CCACCTGCCTCTGCCTCCGCAGTGCTGGGATTAAAGGTGTGTGCCACCAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTCTGCCTCCGCAGTGCTGGGATTAAAGGTGTGTGCCACCAC  999

seq1  TGCCAGGCAGAACAGTTCTTTATTTACATTCTCAAATTAAGGTTTGGTAC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCAGAACAGTTCTTTATTTACATTCTCAAATTAAGGTTTGGTAC  1049

seq1  GCTTAATAATGAATTC  1051
      ||||||||||||||||
seq2  GCTTAATAATGAATTC  1065

seq1: chr5_57622948_57624104
seq2: B6Ng01-089D22.g_69_1203

seq1  GAATTCATAATCAAAAAGCTTTCATCATTTTAAATTTATATTGAATAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATCAAAAAGCTTTCATCATTTTAAATTTATATTGAATAGAG  50

seq1  ATAGCTGGGATAAGAGGTTTGAGAGAAGGTGGAAGCTTTAGAATGAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGGGATAAGAGGTTTGAGAGAAGGTGGAAGCTTTAGAATGAGCTC  100

seq1  TGTATTTTTTTATTTTTACAAGTATATATTCCTATGTTTTGGATGGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTTTATTTTTACAAGTATATATTCCTATGTTTTGGATGGAAAT  150

seq1  CAACAACAATTCTTCAAGACTTTCAAACCAGCTACAAGCAGTTCTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAATTCTTCAAGACTTTCAAACCAGCTACAAGCAGTTCTCAGAC  200

seq1  TTAGAGTGTCTTGTTTTGCTTTTAATTTACATTTAGAGTGCATCTTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTGTCTTGTTTTGCTTTTAATTTACATTTAGAGTGCATCTTGTTG  250

seq1  TAAGTGGTATGTAGAACTCTCACGCGAATAGAAGAAATAGCAAACAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTATGTAGAACTCTCACGCGAATAGAAGAAATAGCAAACAGTTT  300

seq1  ATGCCTCTGAAGCTGCTGCATGCCGGGCTTATTTTATGTTTTGGATAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTGAAGCTGCTGCATGCCGGGCTTATTTTATGTTTTGGATAAAC  350

seq1  TGAAGCAAGGAAGTTTAATAAGTATATTTATTTTTGAGTTTGTTTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGGAAGTTTAATAAGTATATTTATTTTTGAGTTTGTTTGAAGT  400

seq1  AATTGAATTGTGTCTTGAGTTTGAAATCTCTGGATTGTTTATTTAGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTGTGTCTTGAGTTTGAAATCTCTGGATTGTTTATTTAGATTA  450

seq1  AAACATTACAGTTAGGATGACTATATAATAAGTTATAGTAATTGCCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTACAGTTAGGATGACTATATAATAAGTTATAGTAATTGCCATTC  500

seq1  AGTGGCATTTTTACTCTAGGTAAATATTGAATTTGGTCTGTAAGATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCATTTTTACTCTAGGTAAATATTGAATTTGGTCTGTAAGATAAGT  550

seq1  GCTGGATCTTTTACGAATGAGACATTAATTTACCACCTGATTGCTAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCTTTTACGAATGAGACATTAATTTACCACCTGATTGCTAGCAC  600

seq1  ACAGTATGATGTTTTTGGTTGTTAGCGAAGGCCTGTGCCAATTACTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGATGTTTTTGGTTGTTAGCGAAGGCCTGTGCCAATTACTTTCT  650

seq1  GAAAATGAAGGGCATGACAGAAGAACAAATATGAAGACAATAAAGTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAAGGGCATGACAGAAGAACAAATATGAAGACAATAAAGTACTA  700

seq1  ATTAATATAATGTATTAACTAATATGAGCAGCAAAATAAAAGTTTAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATAATGTATTAACTAATATGAGCAGCAAAATAAAAGTTTAAAAG  750

seq1  GCATTAGTAAAACATAACATAAACCTCGAACTATGTAGTATTTTATTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGTAAAACATAACATAAACCTCGAACTATGTAGTATTTTATTATC  800

seq1  ATTTTCTTAATCTGAACTACTCTTAGTTACTCAAATGTTCCTCATCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAATCTGAACTACTCTTAGTTACTCAAATGTTCCTCATCTTAA  850

seq1  GTGTTTTGACCAGAAACATCATACCTGGGCTCTGAAACTGGCAAAATAAT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGTTTTGACCAGAAACATCATACCTGGGCTCTGAAACTGGC-AAATAAT  899

seq1  GTATTCTAATAAGTTTCATAGGAGCTTCTCAGGCATCAACCAACTAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTAATAAGTTTCATAGGAGCTTCTCAGGCATCAACCAACTAAAAA  949

seq1  CA-CCCATAAGTGCAATTAAACATATCCTTCCCCATGTCCCTTCCAGAAC  999
      || ||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  CACCCCATAAGTGCAATTAAACATATCCTT-CCCATGTCCC-TCCAGAAC  997

seq1  ACCAAACATATCATTATTTTATTTTTA-TGTCTGCCTTTGATGTTAGGAT  1048
      |||||||||||||||| |||||||||| |||||| |||||||||   |||
seq2  ACCAAACATATCATTA-TTTATTTTTATTGTCTG-CTTTGATGT--AGAT  1043

seq1  TTTTTTAACCTATCAAAATCTAGGGGATATGAAATAGAAATTTTTTTCTA  1098
      ||||     ||||| ||||||| |||| ||| |||||||    |||||||
seq2  TTTT----ACTATC-AAATCTA-GGGAAATG-AATAGAA----TTTTCTA  1082

seq1  CATTATTTATGTAGTGCAAAACTCAGCCAGGAGAAGCTGCACCCACTTTT  1148
       |||||||||||||||| ||||||||||   ||||||||||||||| |||
seq2  -ATTATTTATGTAGTGC-AAACTCAGCC---AGAAGCTGCACCCAC-TTT  1126

seq1  GTTTAAAGG  1157
      |||||||||
seq2  GTTTAAAGG  1135