BAC Information

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BAC

Clone NameB6Ng01-089P22
Chromosome5 (Build37)
Map Location 15,488,996 - 15,637,638
singlet/doubletdoublet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089P22.bB6Ng01-089P22.g
ACCDH902418DH902419
length1,1041,155
definitionDH902418|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P22, 5' end.DH902419|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,636,514 - 15,637,638)(15,488,996 - 15,490,161)
sequence
gaattctataattgataataatggacatatttaaaatggatagcagtata
aatctttacaacaaatacatataaacaaaattgatattataatatatcca
aagcccttgacgtgctaattgtaaaagaaatcaatagcaactcttaattt
gctagtagaatccttatgatataaaaacatcagcaagcctccaatggcta
aaatattatacaatattctaaacaatagatttttatcttttcagctttat
cagaaatctgtacctctcaagaaaacacccactgaaagacatatcactat
gtcaacattgcaaagcagaaataatttaaggagtttaaataaaagtatct
gctcatcaatcagaacgattgaaagcaagaatcctgtcattccgttctaa
atacattaagtattagacttgctattcatttataaaattttggaaaaaaa
atagacaatagtctgcataacactgcaacacttttagtacaggatgatat
aatgtaaatacataaatagatgatagatagatgatagataaaataaatca
cacaaatacttctttacaacctaatattacagtctttgaactactatttc
atcttttatacaaaatatccttcttagtaattgttttcttcaaacataat
tttcaaaatgttttatctattgcagaatgtttttcaggttagacagaaaa
aaaatcttgcatcttttttcttaaattgtatgcatttactctaatacaca
gtagaaagctattcaatacaagaattccatacaattcactgaaggaaaaa
agacaaagataaagatatgtaaatgaaccttaattgttacacagagaata
attgttaaaaactattatttttctcaaaaattaagattcttacaatttgt
attctttcttatgaaaattatttggtcaaaccacattactatactacaaa
actgtgactctactattttcttaaactttctttctcaagttgttttgtgt
ttctgcgcatttgctttggtggtttggtgcttctgagacaggtctccctg
attccatgtatctcagctgtgcaaactagcttgtgctatggggaggaact
tgtc
gaattctttggaaagtaaacaatgtatcttgcactaaaaccaaggagatt
ctgaacttgttggtaaagcctgtcctccctataccgtaacagacacacag
ttacaacagagctgtcagctctgttgcacatttattcatcctgagcatcc
atgagaaacatttctagcaaggagagttgctggtggaattatggaagtag
agatctctatggcagagttcctcctttctctagagatataattccttcca
tatgtaagttaacagtctgtttcctcttgagactctgcgaactttagcct
cagtaaagatggaaggttcttatttacttacttttgacattcagccatgg
gaaacagaaagaaagatgagcaaagcacaggctgacacaagtgtggccca
acgatggcaagtgctccccagatcctttcttgtgtctggaagctcagtca
tggtaaacctgggggagggagcctgtgagtgcacacaggagaaagcgttt
gtgccgagcctgtcattcagcaggggcacaggcggacagagcattttaat
acattactgtgacttatgttctgtctgtgtccttaattcatttttacatc
atgcccaaaggatttttttgtgtggtgtatcaacattctcttcctccttt
tcctcttcaccctctcctttcttcttcttctcttcctccttctattttct
tcttcttcaagatctttatatctgctcatttttgtcattaaaatatgtgt
ttgtttgatttcttcttcgttgatctctgccttatattctccttaaagtt
actagaagctatgatttctttactcatccatctttgtcattcatacacta
gtgaactaataagttttaagcttcttgtgtttgttaggaataattgcaat
aattatttcatattaagacaattttttttctggaataaaagatattattt
cttttttacttgactatatttgtttaaattaatacaaatactttacacat
aattttattgagaacctagagttactatagcagaacacttgtactggagg
cctaaacacaatatggtggtcatttctgagaaggaaagcctaaagtcaag
atctggtccagcacttccaagtaaggccactttcttgcttgaaagggctg
cttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15636514_15637638
seq2: B6Ng01-089P22.b_45_1148 (reverse)

seq1  GACAGGTTCCT-CCCATAGCAACATAGCTAGTTTGGCACAGCCTGAGATA  49
      |||| |||||| |||||||| ||| ||||||||| |||||| ||||||||
seq2  GACAAGTTCCTCCCCATAGC-ACA-AGCTAGTTT-GCACAG-CTGAGATA  46

seq1  CATGGGAATACAAGGGGAGACCTTGTCTCAGAAAGCAACCAAAAACCAAA  99
      ||| ||||| ||  |||||||| |||||||| ||||| |   |||||  |
seq2  CAT-GGAAT-CA--GGGAGACC-TGTCTCAG-AAGCACC---AAACC--A  85

seq1  CCAAAGCAAAATGCGCAGAAACAACAAAAACAAACTTGAAGAAAGAAAGT  149
      ||||||| |||||||||||||| ||||||   |||||| |||||||||||
seq2  CCAAAGC-AAATGCGCAGAAAC-ACAAAA--CAACTTG-AGAAAGAAAGT  130

seq1  TTAAGAAAAATAGTAGAGTCACAGTTTTGTAGTATAGTAATGTGGTTTGA  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAG-AAAATAGTAGAGTCACAGTTTTGTAGTATAGTAATGTGGTTTGA  179

seq1  CCAAAATAATTTTCATAAAGAAAGAATACAAATTGTAAGAATCTTAATTT  249
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CC-AAATAATTTTCAT-AAGAAAGAATACAAATTGTAAGAATCTTAATTT  227

seq1  TTGAG-AAAATAATAGTTTTTAACAATTATTCTCTGTGTAACAATTAAGG  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAAATAATAGTTTTTAACAATTATTCTCTGTGTAACAATTAAGG  277

seq1  TTCATTTACATATCTTTATCTTTGTCTTTTTTCCTTCAGTGAATTGTATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTACATATCTTTATCTTTGTCTTTTTTCCTTCAGTGAATTGTATG  327

seq1  GAATTCTTGTATTGAATAGCTTTCTACTGTGTATTAGAGTAAATGCATAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTATTGAATAGCTTTCTACTGTGTATTAGAGTAAATGCATAC  377

seq1  AATTTAAGAAAAAAGATGCAAGATTTTTTTTCTGTCTAACCTGAAAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGAAAAAAGATGCAAGATTTTTTTTCTGTCTAACCTGAAAAACA  427

seq1  TTCTGCAATAGATAAAACATTTTGAAAATTATGTTTGAAGAAAACAATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAATAGATAAAACATTTTGAAAATTATGTTTGAAGAAAACAATTA  477

seq1  CTAAGAAGGATATTTTGTATAAAAGATGAAATAGTAGTTCAAAGACTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGATATTTTGTATAAAAGATGAAATAGTAGTTCAAAGACTGTA  527

seq1  ATATTAGGTTGTAAAGAAGTATTTGTGTGATTTATTTTATCTATCATCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGGTTGTAAAGAAGTATTTGTGTGATTTATTTTATCTATCATCTA  577

seq1  TCTATCATCTATTTATGTATTTACATTATATCATCCTGTACTAAAAGTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATCTATTTATGTATTTACATTATATCATCCTGTACTAAAAGTGT  627

seq1  TGCAGTGTTATGCAGACTATTGTCTATTTTTTTTCCAAAATTTTATAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTTATGCAGACTATTGTCTATTTTTTTTCCAAAATTTTATAAAT  677

seq1  GAATAGCAAGTCTAATACTTAATGTATTTAGAACGGAATGACAGGATTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCAAGTCTAATACTTAATGTATTTAGAACGGAATGACAGGATTCT  727

seq1  TGCTTTCAATCGTTCTGATTGATGAGCAGATACTTTTATTTAAACTCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAATCGTTCTGATTGATGAGCAGATACTTTTATTTAAACTCCTT  777

seq1  AAATTATTTCTGCTTTGCAATGTTGACATAGTGATATGTCTTTCAGTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCTGCTTTGCAATGTTGACATAGTGATATGTCTTTCAGTGGG  827

seq1  TGTTTTCTTGAGAGGTACAGATTTCTGATAAAGCTGAAAAGATAAAAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTGAGAGGTACAGATTTCTGATAAAGCTGAAAAGATAAAAATC  877

seq1  TATTGTTTAGAATATTGTATAATATTTTAGCCATTGGAGGCTTGCTGATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTAGAATATTGTATAATATTTTAGCCATTGGAGGCTTGCTGATG  927

seq1  TTTTTATATCATAAGGATTCTACTAGCAAATTAAGAGTTGCTATTGATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATCATAAGGATTCTACTAGCAAATTAAGAGTTGCTATTGATTT  977

seq1  CTTTTACAATTAGCACGTCAAGGGCTTTGGATATATTATAATATCAATTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAATTAGCACGTCAAGGGCTTTGGATATATTATAATATCAATTT  1027

seq1  TGTTTATATGTATTTGTTGTAAAGATTTATACTGCTATCCATTTTAAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATGTATTTGTTGTAAAGATTTATACTGCTATCCATTTTAAATA  1077

seq1  TGTCCATTATTATCAATTATAGAATTC  1125
      |||||||||||||||||||||||||||
seq2  TGTCCATTATTATCAATTATAGAATTC  1104

seq1: chr5_15488996_15490161
seq2: B6Ng01-089P22.g_71_1225

seq1  GAATTCTTTGGAAAGTAAACAATGTATCTTGCACTAAAACCAAGGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAAAGTAAACAATGTATCTTGCACTAAAACCAAGGAGATT  50

seq1  CTGAACTTGTTGGTAAAGCCTGTCCTCCCTATACCGTAACAGACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTGTTGGTAAAGCCTGTCCTCCCTATACCGTAACAGACACACAG  100

seq1  TTACAACAGAGCTGTCAGCTCTGTTGCACATTTATTCATCCTGAGCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAGAGCTGTCAGCTCTGTTGCACATTTATTCATCCTGAGCATCC  150

seq1  ATGAGAAACATTTCTAGCAAGGAGAGTTGCTGGTGGAATTATGGAAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACATTTCTAGCAAGGAGAGTTGCTGGTGGAATTATGGAAGTAG  200

seq1  AGATCTCTATGGCAGAGTTCCTCCTTTCTCTAGAGATATAATTCCTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTATGGCAGAGTTCCTCCTTTCTCTAGAGATATAATTCCTTCCA  250

seq1  TATGTAAGTTAACAGTCTGTTTCCTCTTGAGACTCTGCGAACTTTAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGTTAACAGTCTGTTTCCTCTTGAGACTCTGCGAACTTTAGCCT  300

seq1  CAGTAAAGATGGAAGGTTCTTATTTACTTACTTTTGACATTCAGCCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGATGGAAGGTTCTTATTTACTTACTTTTGACATTCAGCCATGG  350

seq1  GAAACAGAAAGAAAGATGAGCAAAGCACAGGCTGACACAAGTGTGGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAAAGAAAGATGAGCAAAGCACAGGCTGACACAAGTGTGGCCCA  400

seq1  ACGATGGCAAGTGCTCCCCAGATCCTTTCTTGTGTCTGGAAGCTCAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGCAAGTGCTCCCCAGATCCTTTCTTGTGTCTGGAAGCTCAGTCA  450

seq1  TGGTAAACCTGGGGGAGGGAGCCTGTGAGTGCACACAGGAGAAAGCGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAACCTGGGGGAGGGAGCCTGTGAGTGCACACAGGAGAAAGCGTTT  500

seq1  GTGCCGAGCCTGTCATTCAGCAGGGGCACAGGCGGACAGAGCATTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGAGCCTGTCATTCAGCAGGGGCACAGGCGGACAGAGCATTTTAAT  550

seq1  ACATTACTGTGACTTATGTTCTGTCTGTGTCCTTAATTCATTTTTACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTGTGACTTATGTTCTGTCTGTGTCCTTAATTCATTTTTACATC  600

seq1  ATGCCCAAAGGATTTTTTTGTGTGGTGTATCAACATTCTCTTCCTCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAAAGGATTTTTTTGTGTGGTGTATCAACATTCTCTTCCTCCTTT  650

seq1  TCCTCTTCACCCTCTCCTTTCTTCTTCTTCTCTTCCTCCTTCTATTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCACCCTCTCCTTTCTTCTTCTTCTCTTCCTCCTTCTATTTTCT  700

seq1  TCTTCTTCAAGATCTTTATATCTGCTCA-TTTTGTCATTAAAATATGTGT  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTCTTCAAGATCTTTATATCTGCTCATTTTTGTCATTAAAATATGTGT  750

seq1  TTGTTTGATTTCTTCTTCGTTGATCTCTGCCTTATATTCTCCTTAAAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGATTTCTTCTTCGTTGATCTCTGCCTTATATTCTCCTTAAAGTT  800

seq1  ACTAGAAGCTATGATTTCTTTACTCATCCATCTTTGTCATTCATACACTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGCTATGATTTCTTTACTCATCCATCTTTGTCATTCATACACTA  850

seq1  GTGAACTAATAAGTTTTAAGCTTCTTGTGTTTGTTAGGAATTAATTGCAA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGAACTAATAAGTTTTAAGCTTCTTGTGTTTGTTAGGAA-TAATTGCAA  899

seq1  TAATTATTTCATATTAAGACAA-TTTTTTTCTGG-ATAAAAGATTATTAT  947
      |||||||||||||||||||||| ||||||||||| |||||||| ||||| 
seq2  TAATTATTTCATATTAAGACAATTTTTTTTCTGGAATAAAAGA-TATTA-  947

seq1  TTTCTTTTTTACTTGACTATATTTTGTTTAAATTAAATAACAAAATACTT  997
      ||||||||||||||||||||| |||||||||||| ||||   ||||||||
seq2  TTTCTTTTTTACTTGACTATA-TTTGTTTAAATT-AATA--CAAATACTT  993

seq1  TACAACATAATTTTATTGAGAACCTAGAGCTACTATAGCAGAACACTGTT  1047
      ||| ||||||||||||||||||||||||| ||||||||||||||||| | 
seq2  TAC-ACATAATTTTATTGAGAACCTAGAGTTACTATAGCAGAACACT-TG  1041

seq1  AACTGGAGGCTTAAACAGGAAATAT-GTGGTCATTCTGGAGAAGGAAAGC  1096
       ||||||||| ||||||   ||||| |||||||||   ||||||||||||
seq2  TACTGGAGGCCTAAACA--CAATATGGTGGTCATTTCTGAGAAGGAAAGC  1089

seq1  CCAAGGCCAAGGTTCTGGTCCATTCACTTTCAAGTGAGGGCCATCTTCCT  1146
      | || | ||| | |||||||||  ||||| ||||| | |||||  ||| |
seq2  CTAAAGTCAA-GATCTGGTCCA-GCACTTCCAAGT-AAGGCCACTTTCTT  1136

seq1  GCTTGAAGAAGGCTGCTTCA  1166
      ||||||| | ||||||||||
seq2  GCTTGAA-AGGGCTGCTTCA  1155