BAC Information

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BAC

Clone NameB6Ng01-090D22
Chromosome5 (Build37)
Map Location 36,724,401 - 36,880,609
singlet/doubletdoublet
Overlap geneSorcs2, Grpel1, Ccdc96, Tbc1d14
Upstream geneHmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, 2310020A21Rik
Downstream geneD5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D22.bB6Ng01-090D22.g
ACCDH902600DH902601
length1,153938
definitionDH902600|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D22, 5' end.DH902601|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,724,401 - 36,725,564)(36,879,931 - 36,880,609)
sequence
gaattcagtctctcccttcagctctctggaactgggcttctgtgacccat
gaccaagcatcctggttttgtggcccacattgcagagcacacaagcagag
aagggagtgagagcacccaaccctcacatagcttgaaagctaactgggaa
gagttgtcggccagaacacagacaatcaaagccaagagcatggtgtgcag
atgcggggagaagagggagacaatgcagcatcccagagatgaaggtcttg
agtgacgttctcaggagaagccctacactgtgctgcacccatcttcagtt
tctgtatgaatcacacacacacatgcacacaccacacacacacaccacac
atacaccacacacgtgcacatatagacacacattacatacacatatacac
acatacatgcataggcacatacacacacaccacacacacatatacacacc
acacatacaaacacatgtataggcacataaacatgcacacacacatacac
gtgcacggacgcacacaccacacccacactgccaccaccacaaggacaca
aagctactgggcactcaggtcacaggagtgactcccacccagataacagg
acactcttgatagaattatgcagaccaacactggagccgtcattatctac
ttccactaccataaaaaattcccttttcaatttcttccagaggagagaga
ataaaagggattaaggattagaggattagagatggtgtcttagccacaca
tggccccttctgcaagtggcccccacctcagcatgcctgcttctctctta
atggcccttgggatgtgtctgtacttgacggaattccacaagaataaact
tcgtcctttagaaagcaacctcagcgagtgttgggggatgaccacgggcc
acatgccactgcctgcctgaggacccaccctaggttcctctctctttgcc
cccacacctctagaagctttccgagtctccaggcagaagtttggggattt
tcttttctttgtagtggaataggctcagtgtcagagcccttcatttattg
cttgagaaaatatgcaaaaacatgagatgccttgacacagttgagcatga
cctcacctcctcctgttagcagcagtcttgagaagtgcactgattcgacc
act
gaattcctagattctgtatggatgtgcctgtactcacctgcagccacata
cccagtgaataaaacaaaaatcataataaaaacaaaacaaaacaaaaaga
agaagccagagtcactggtttgaatttatgtcactgcactgagatccccg
gagaaagaatttataacaacagcaacaacaaaattattagaataagtaaa
cgaatatgtcccaaatttgacaaaaaaccacaaacctacagatttaagtt
aagtcagtgactccataaacagggtaagttctaagaagttcatggcctgg
caagttataacccaatgttgaaagtaaaggcaaagatgtctacaatcatc
aagagaaaacagtgcattacttattgaggaataataatttgaatgtctat
gaatttctcatcaaaaacagagggggctggagaggtgcgagcccaacaat
cagagcagctacagcgcttgcacagaaccaggttccgttcccaacatcca
ggttggcaggctcgtccacctgtaactcaagctccaacccggtgcccctt
ttgagcttctgctagcacccacaaacacctgctcatagcccccacataca
cacaattaaaatacaatgaaaatatttgttaaaaactcataaagggaatc
aataattttagactgttaagaaaagaactgtcattccagagtcttgtatc
aagaacaaaggggaaaggaaagggcgctcagatgaagactaaacgtgttt
gctggcaggagcctcgttgtaagagagttggccaaagactatacttttca
gggatcgtttcatacaagagttggccactgcagggtcattgcactagaaa
gaaccttggaacacaggaagaagaggaatagaaatggtagacatatgggc
agaaggcataattcagataggcagttagttctcagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_36724401_36725564
seq2: B6Ng01-090D22.b_46_1198

seq1  GAATTCAGTCTCTCCCTTCAGCTCTCTGGAACTGGGCTTCTGTGACCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCTCCCTTCAGCTCTCTGGAACTGGGCTTCTGTGACCCAT  50

seq1  GACCAAGCATCCTGGTTTTGTGGCCCACATTGCAGAGCACACAAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGCATCCTGGTTTTGTGGCCCACATTGCAGAGCACACAAGCAGAG  100

seq1  AAGGGAGTGAGAGCACCCAACCCTCACATAGCTTGAAAGCTAACTGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGTGAGAGCACCCAACCCTCACATAGCTTGAAAGCTAACTGGGAA  150

seq1  GAGTTGTCGGCCAGAACACAGACAATCAAAGCCAAGAGCATGGTGTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCGGCCAGAACACAGACAATCAAAGCCAAGAGCATGGTGTGCAG  200

seq1  ATGCGGGGAGAAGAGGGAGACAATGCAGCATCCCAGAGATGAAGGTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGGGAGAAGAGGGAGACAATGCAGCATCCCAGAGATGAAGGTCTTG  250

seq1  AGTGACGTTCTCAGGAGAAGCCCTACACTGTGCTGCACCCATCTTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACGTTCTCAGGAGAAGCCCTACACTGTGCTGCACCCATCTTCAGTT  300

seq1  TCTGTATGAATCACACACACACATGCACACACCACACACACACACCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGAATCACACACACACATGCACACACCACACACACACACCACAC  350

seq1  ATACACCACACACGTGCACATATAGACACACACAACATACACATATACAC  400
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  ATACACCACACACGTGCACATATAGACACACATTACATACACATATACAC  400

seq1  ACATACATGCATAGGCACATACACACACACCACACACACATATACACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCATAGGCACATACACACACACCACACACACATATACACACC  450

seq1  ACACATACAAACACATGTATAGGCACATAAACATGCACACACACATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAAACACATGTATAGGCACATAAACATGCACACACACATACAC  500

seq1  GTGCACGGACGCACACACCACACCCACACTGCCACCACCACAAGGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGGACGCACACACCACACCCACACTGCCACCACCACAAGGACACA  550

seq1  AAGCTACTGGGCACTCAGGTCACAGGAGTGACTCCCACCCAGATAACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTGGGCACTCAGGTCACAGGAGTGACTCCCACCCAGATAACAGG  600

seq1  ACACTCTTGATAGAATTATGCAGACCAACACTGGAGCCGTCATTATCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTGATAGAATTATGCAGACCAACACTGGAGCCGTCATTATCTAC  650

seq1  TTCCACTACCATAAAAAATTCCCTTTTCAATTTCTTCCAGAGGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTACCATAAAAAATTCCCTTTTCAATTTCTTCCAGAGGAGAGAGA  700

seq1  ATAAAAGGGATTAAGGATTAGAGGATTAGAGATGGTGTCTTAGCCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGATTAAGGATTAGAGGATTAGAGATGGTGTCTTAGCCACACA  750

seq1  TGGCCCCTTCTGCAAGTGGCCCCCACCTCAGCATGCCTGCTTCTCTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTTCTGCAAGTGGCCCCCACCTCAGCATGCCTGCTTCTCTCTTA  800

seq1  ATGGCCCTTGGGATGTGTCTGTACTTGACGGAATTCCACAAGAATAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTTGGGATGTGTCTGTACTTGACGGAATTCCACAAGAATAAACT  850

seq1  TCGTCCTTTAGAAAGCAACCTCAGCGAGTGTTGGGGGATGACCACGGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTTTAGAAAGCAACCTCAGCGAGTGTTGGGGGATGACCACGGGCC  900

seq1  ACATGCCACTGCCTGCCTGAGGACCCACCCTAGGTTCCTCTCTCTTTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCACTGCCTGCCTGAGGACCCACCCTAGGTTCCTCTCTCTTTGCC  950

seq1  CCCACCACCTCTAGAAGCTTTCCGAGTCCTCCAGGCAGAAGGTTTGGGGA  1000
      |||| |||||||||||||||||||||| |||||||||||| |||||||||
seq2  CCCA-CACCTCTAGAAGCTTTCCGAGT-CTCCAGGCAGAA-GTTTGGGGA  997

seq1  TTTCCTTT--CTTGTAGTGGAATAAGGGCTCAGTGTCAGAGCCC-TCATT  1047
      ||| ||||   |||||||||||||  |||||||||||||||||| |||||
seq2  TTTTCTTTTCTTTGTAGTGGAATA--GGCTCAGTGTCAGAGCCCTTCATT  1045

seq1  TATTGCTTGAGAAAAATATGCAAAAACATGAGATTGCTTGAACACAGTCT  1097
      ||||||||||| ||||||||||||||||||||||  |||| ||||||| |
seq2  TATTGCTTGAG-AAAATATGCAAAAACATGAGATGCCTTG-ACACAGT-T  1092

seq1  GAGGCCATGA-CTCAACTCCT-CTGTTAGCCAGCAGGGTTCTGAGAAGTG  1145
      |||  ||||| |||| ||||| ||||||| |||||  ||  |||||||||
seq2  GAG--CATGACCTCACCTCCTCCTGTTAG-CAGCA--GTCTTGAGAAGTG  1137

seq1  CAGCTGGCTCCCGACCACT  1164
      || |||  |  ||||||||
seq2  CA-CTGATT--CGACCACT  1153

seq1: chr5_36879931_36880609
seq2: B6Ng01-090D22.g_68_746 (reverse)

seq1  AGTTCTTTTCTTAACAGTCTAAAATTATTGATTCCCTTTATGAGTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTTCTTAACAGTCTAAAATTATTGATTCCCTTTATGAGTTTTTA  50

seq1  ACAAATATTTTCATTGTATTTTAATTGTGTGTATGTGGGGGCTATGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTTTCATTGTATTTTAATTGTGTGTATGTGGGGGCTATGAGCA  100

seq1  GGTGTTTGTGGGTGCTAGCAGAAGCTCAAAAGGGGCACCGGGTTGGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGTGGGTGCTAGCAGAAGCTCAAAAGGGGCACCGGGTTGGAGCT  150

seq1  TGAGTTACAGGTGGACGAGCCTGCCAACCTGGATGTTGGGAACGGAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAGGTGGACGAGCCTGCCAACCTGGATGTTGGGAACGGAACCT  200

seq1  GGTTCTGTGCAAGCGCTGTAGCTGCTCTGATTGTTGGGCTCGCACCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTGCAAGCGCTGTAGCTGCTCTGATTGTTGGGCTCGCACCTCTC  250

seq1  CAGCCCCCTCTGTTTTTGATGAGAAATTCATAGACATTCAAATTATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTCTGTTTTTGATGAGAAATTCATAGACATTCAAATTATTATT  300

seq1  CCTCAATAAGTAATGCACTGTTTTCTCTTGATGATTGTAGACATCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATAAGTAATGCACTGTTTTCTCTTGATGATTGTAGACATCTTTGC  350

seq1  CTTTACTTTCAACATTGGGTTATAACTTGCCAGGCCATGAACTTCTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTTCAACATTGGGTTATAACTTGCCAGGCCATGAACTTCTTAGA  400

seq1  ACTTACCCTGTTTATGGAGTCACTGACTTAACTTAAATCTGTAGGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCCTGTTTATGGAGTCACTGACTTAACTTAAATCTGTAGGTTTGT  450

seq1  GGTTTTTTGTCAAATTTGGGACATATTCGTTTACTTATTCTAATAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTCAAATTTGGGACATATTCGTTTACTTATTCTAATAATTTT  500

seq1  GTTGTTGCTGTTGTTATAAATTCTTTCTCCGGGGATCTCAGTGCAGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCTGTTGTTATAAATTCTTTCTCCGGGGATCTCAGTGCAGTGAC  550

seq1  ATAAATTCAAACCAGTGACTCTGGCTTCTTCTTTTTGTTTTGTTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCAAACCAGTGACTCTGGCTTCTTCTTTTTGTTTTGTTTTGTTT  600

seq1  TTATTATGATTTTTGTTTTATTCACTGGGTATGTGGCTGCAGGTGAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGATTTTTGTTTTATTCACTGGGTATGTGGCTGCAGGTGAGTAC  650

seq1  AGGCACATCCATACAGAATCTAGGAATTC  679
      |||||||||||||||||||||||||||||
seq2  AGGCACATCCATACAGAATCTAGGAATTC  679