BAC Information

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BAC

Clone NameB6Ng01-090G02
Chromosome5 (Build37)
Map Location 119,369,119 - 119,544,432
singlet/doubletdoublet
Overlap geneLOC100039488
Upstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
Downstream geneEG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090G02.bB6Ng01-090G02.g
ACCDH902694DH902695
length7971,108
definitionDH902694|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G02, 5' end.DH902695|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,543,636 - 119,544,432)(119,369,119 - 119,370,218)
sequence
gaattctcatgtgtggtcactgtgacaagtatgattatcccaccctcttg
tccccttagtcacccaagggggacattgctggtcagagatgcatactggg
aaggaggggatgcttccatgaacatttgcatatgactcactctggaaggt
tctgtctgtatttcctgattcaaagcaggttagaagagacacctagttat
ggggatctcgttcctctttccaccattgcttctttttccagaacattttt
ttttgacacgagtactatgatcttatgtttctaaggtgtcccccccaaaa
aaaacttgtttctacgatacttgaccaagtttctccaaattcagaataag
tggctgctgagagggctcagtggctaagcctgagttcaattcctcagact
cctgtgaagtgtcctctgactgccacacatgcactaaggaatgcacactc
gagcgtgcacacacacacacacacacacacacacacctccacagcagttc
tgggacatggacacgcccctcaggttagtccccttgcaggtggaactgga
caaggcctggatgacagtctgtgtcccccagtcacttgacagctcttccc
agtgagggcggtaggttttgtaagaaaagccgggtgccatggggcacgcc
ttcagaaccataatccctgtctagggaggagggttgtgtgtttgaggcta
gcctaggctccatggtgagctcctgcctgggaaaccctttttctaaagag
aaagaaggggaaagcaaagcggggagggagggaaggagggagagaat
gaattcacacggagctgaagctctgattgttactccctggcctcagacgt
cccctggggccctctgcctctttggaggaggcgcccagtggtctggtatt
ttcaaggtgtaagctagcgccatgcgcccaggagacagaggcagaaagca
tcccttctccagccccttggagtggatgcttaggtgtctaccagagcatt
aagcacttggcctcctcactccctcttctctctgacaaagcttttacacg
gagcacgagtgcccataaataacaggccaacctataaataaatacagctg
ggagcccacaaaagcccctgacaaatgctgtttatttaatttctcaagtg
tggtccatttgggtgcaaggagaagagagcctgagctttaactaggccgg
cattactgccgaggctcgcctttcccacggaggggccatcttgttctttc
cccgacactttgttgcactttgtgcaacaactgagctgtctgaagctagg
gacccagagacaagagggggttttcagacctttccagaagaggtttgctc
acctctggggaagacaagtccccatcatattaggctggctggcacccagc
cagaatgacctgtgatcgatgccagtagaaagatctagaacgctgaggta
gggatgggagacagggatggacagcagtgtaacacatcaaggatataact
tgtttcagaagcagatatgtagtgggtcctttgtttcctgctctttgcaa
gcatcctgcttaggatgcctgcctctttcgttttcctacaaccaaatctt
ttctcagtcttccctgctcacctggaatgcttttctctgtctgaaaacaa
gcaggggaccagcgccacttctttgtgtaatctcaagcatcccagtgtgg
tttcctttaaaattcatttacatttcaatgacatccttttttgtagttcc
tgggtgatcgcttgcctagctcacctgagtagcaagtctccccggtccct
tccttctcagatctggagcccctaatggcatctcatctgagccaccccaa
gacttccccttctgcttatccaggcagccctggagaaagagtttggaaat
gctactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_119543636_119544432
seq2: B6Ng01-090G02.b_47_843 (reverse)

seq1  ATTCTCTCCCTCCTTCCCTCCCTCCCCGCTTTGCTTTCCCCTTCTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCCCTCCTTCCCTCCCTCCCCGCTTTGCTTTCCCCTTCTTTCTC  50

seq1  TTTAGAAAAAGGGTTTCCCAGGCAGGAGCTCACCATGGAGCCTAGGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAAGGGTTTCCCAGGCAGGAGCTCACCATGGAGCCTAGGCTAG  100

seq1  CCTCAAACACACAACCCTCCTCCCTAGACAGGGATTATGGTTCTGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACACACAACCCTCCTCCCTAGACAGGGATTATGGTTCTGAAGGC  150

seq1  GTGCCCCATGGCACCCGGCTTTTCTTACAAAACCTACCGCCCTCACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCATGGCACCCGGCTTTTCTTACAAAACCTACCGCCCTCACTGGG  200

seq1  AAGAGCTGTCAAGTGACTGGGGGACACAGACTGTCATCCAGGCCTTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGTCAAGTGACTGGGGGACACAGACTGTCATCCAGGCCTTGTCC  250

seq1  AGTTCCACCTGCAAGGGGACTAACCTGAGGGGCGTGTCCATGTCCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACCTGCAAGGGGACTAACCTGAGGGGCGTGTCCATGTCCCAGAA  300

seq1  CTGCTGTGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCTCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCTCGAG  350

seq1  TGTGCATTCCTTAGTGCATGTGTGGCAGTCAGAGGACACTTCACAGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTCCTTAGTGCATGTGTGGCAGTCAGAGGACACTTCACAGGAGT  400

seq1  CTGAGGAATTGAACTCAGGCTTAGCCACTGAGCCCTCTCAGCAGCCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATTGAACTCAGGCTTAGCCACTGAGCCCTCTCAGCAGCCACTT  450

seq1  ATTCTGAATTTGGAGAAACTTGGTCAAGTATCGTAGAAACAAGTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATTTGGAGAAACTTGGTCAAGTATCGTAGAAACAAGTTTTTTT  500

seq1  TGGGGGGGACACCTTAGAAACATAAGATCATAGTACTCGTGTCAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGACACCTTAGAAACATAAGATCATAGTACTCGTGTCAAAAAAA  550

seq1  AATGTTCTGGAAAAAGAAGCAATGGTGGAAAGAGGAACGAGATCCCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTGGAAAAAGAAGCAATGGTGGAAAGAGGAACGAGATCCCCATA  600

seq1  ACTAGGTGTCTCTTCTAACCTGCTTTGAATCAGGAAATACAGACAGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTGTCTCTTCTAACCTGCTTTGAATCAGGAAATACAGACAGAACC  650

seq1  TTCCAGAGTGAGTCATATGCAAATGTTCATGGAAGCATCCCCTCCTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGTGAGTCATATGCAAATGTTCATGGAAGCATCCCCTCCTTCCC  700

seq1  AGTATGCATCTCTGACCAGCAATGTCCCCCTTGGGTGACTAAGGGGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCATCTCTGACCAGCAATGTCCCCCTTGGGTGACTAAGGGGACAA  750

seq1  GAGGGTGGGATAATCATACTTGTCACAGTGACCACACATGAGAATTC  797
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGGATAATCATACTTGTCACAGTGACCACACATGAGAATTC  797

seq1: chr5_119369119_119370218
seq2: B6Ng01-090G02.g_70_1177

seq1  GAATTCACACGGAGCTGAAGCTCTGATTGTTACTCCCTGGCCTCAGACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACGGAGCTGAAGCTCTGATTGTTACTCCCTGGCCTCAGACGT  50

seq1  CCCCTGGGGCCCTCTGCCTCTTTGGAGGAGGCGCCCAGTGGTCTGGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGGCCCTCTGCCTCTTTGGAGGAGGCGCCCAGTGGTCTGGTATT  100

seq1  TTCAAGGTGTAAGCTAGCGCCATGCGCCCAGGAGACAGAGGCAGAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTGTAAGCTAGCGCCATGCGCCCAGGAGACAGAGGCAGAAAGCA  150

seq1  TCCCTTCTCCAGCCCCTTGGAGTGGATGCTTAGGTGTCTACCAGAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCCAGCCCCTTGGAGTGGATGCTTAGGTGTCTACCAGAGCATT  200

seq1  AAGCACTTGGCCTCCTCACTCCCTCTTCTCTCTGACAAAGCTTTTACACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTGGCCTCCTCACTCCCTCTTCTCTCTGACAAAGCTTTTACACG  250

seq1  GAGCACGAGTGCCCATAAATAACAGGCCAACCTATAAATAAATACAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGAGTGCCCATAAATAACAGGCCAACCTATAAATAAATACAGCTG  300

seq1  GGAGCCCACAAAAGCCCCTGACAAATGCTGTTTATTTAATTTCTCAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCACAAAAGCCCCTGACAAATGCTGTTTATTTAATTTCTCAAGTG  350

seq1  TGGTCCATTTGGGTGCAAGGAGAAGAGAGCCTGAGCTTTAACTAGGCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATTTGGGTGCAAGGAGAAGAGAGCCTGAGCTTTAACTAGGCCGG  400

seq1  CATTACTGCCGAGGCTCGCCTTTCCCACGGAGGGGCCATCTTGTTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGCCGAGGCTCGCCTTTCCCACGGAGGGGCCATCTTGTTCTTTC  450

seq1  CCCGACACTTTGTTGCACTTTGTGCAACAACTGAGCTGTCTGAAGCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACACTTTGTTGCACTTTGTGCAACAACTGAGCTGTCTGAAGCTAGG  500

seq1  GACCCAGAGACAAGAGGGGGTTTTCAGACCTTTCCAGAAGAGGTTTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGAGACAAGAGGGGGTTTTCAGACCTTTCCAGAAGAGGTTTGCTC  550

seq1  ACCTCTGGGGAAGACAAGTCCCCATCATATTAGGCTGGCTGGCACCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGGGAAGACAAGTCCCCATCATATTAGGCTGGCTGGCACCCAGC  600

seq1  CAGAATGACCTGTGATCGATGCCAGTAGAAAGATCTAGAACGCTGAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGACCTGTGATCGATGCCAGTAGAAAGATCTAGAACGCTGAGGTA  650

seq1  GGGATGGGAGACAGGGATGGACAGCAGTGTAACACATCAAGGATATAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGAGACAGGGATGGACAGCAGTGTAACACATCAAGGATATAACT  700

seq1  TGTTTCAGAAGCAGATATGTAGTGGGTCCTTTGTTTCCTGCTCTTTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGAAGCAGATATGTAGTGGGTCCTTTGTTTCCTGCTCTTTGCAA  750

seq1  GCATCCTGCTTAGGATGCCTGCCTC-TTCGTTTTCCTACAACCAAATC-T  798
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  GCATCCTGCTTAGGATGCCTGCCTCTTTCGTTTTCCTACAACCAAATCTT  800

seq1  TTCTCAGTCTTCCCTGCTCACCTGGAATGC-TTTCTCTGTCTGAAAACAA  847
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTCAGTCTTCCCTGCTCACCTGGAATGCTTTTCTCTGTCTGAAAACAA  850

seq1  GCAGGGGACCAGCGCCACTTCTTTGTGTAATCTCCAAGCATCCCAAGTGT  897
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GCAGGGGACCAGCGCCACTTCTTTGTGTAATCT-CAAGCATCCC-AGTGT  898

seq1  GG-TTCCTTTAAAATTCCATTTACCATTTCAATGACATCC-TTTCTGTAG  945
      || ||||||||||||| |||||| |||||||||||||||| ||| |||||
seq2  GGTTTCCTTTAAAATT-CATTTA-CATTTCAATGACATCCTTTTTTGTAG  946

seq1  TTCCTGGTTGATCGCTTGCCTAGCTCACCTGAGTAGCAAGTCTCCCC-GT  994
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCCTGGGTGATCGCTTGCCTAGCTCACCTGAGTAGCAAGTCTCCCCGGT  996

seq1  CCCCTCCTTCTCAGATCT-GAGCCCCTAATGGCATCTCATCTGAGCCACC  1043
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCTCAGATCTGGAGCCCCTAATGGCATCTCATCTGAGCCACC  1046

seq1  CC-AGACT--CCCCTCTGCTTATCCAGGCAGCC--TGAGAAGAAGTTTGG  1088
      || |||||  ||| |||||||||||||||||||   |||||  |||||||
seq2  CCAAGACTTCCCCTTCTGCTTATCCAGGCAGCCCTGGAGAAAGAGTTTGG  1096

seq1  AAATGCTACTCA  1100
      ||||||||||||
seq2  AAATGCTACTCA  1108