BAC Information

Click to search

BAC

Clone NameB6Ng01-090H17
Chromosome10 (Build37)5 (Build37)
Map Location 104,053,903 - 104,054,36315,052,811 - 15,053,745
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090H17.bB6Ng01-090H17.g
ACCDH902770DH902771
length956941
definitionDH902770|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H17, 5' end.DH902771|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(15,052,811 - 15,053,745)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaacgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaatactcctccaatgttgctg
ggattgcaggcttgtacaaccactctggaaatcagtatggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaatgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggag
gaattcacatcttatttccataaaacatatatgctgtagcatacatacat
acatacatacatacacatatacacacatacacacatacacccatacacac
atacacacacacacacacacacacacacacacacacacacacacacacat
acacacatacacacatacacacatacacacatacaattggtttgtctttt
tagttttggatgggtttgaggtgtggttgttgttggtttgtttttgaaac
agagtctgtctatgtagccttggctgtcatggaatttgctttgtaaacca
ggctggcctcaaattcagagattcaccttcttctgtcttctgagaactag
tagtcaagtctccacgcccagcagtttgaattgttggattaaagattttg
gacatttgtctactttatcttttctattaagatagaaagaagatagccta
ttattcaaatttactcagaaaattattttatagtcagtcatggctggaat
gcagatataaaaaaatcagattgtttggaactgaaaaaagataaaaagtt
caagaaacactttaaaaatatcttttctcttaactagctggtcgttcata
cagctcatgaatcttaatgtgtaacaatattattgagtagcctcagctta
tttcagtttgtcttacattaaatataggttgaatcatgtgtctatagacc
tgcacttttatcatcgtgttatttttcctcataactaaactgctgacatc
aatagacctccaaaaaaatatatacatttatatccgatgagcacaagatg
ttcagaattgtagcacacgtctcgcttttgtcactgtagcttctacgccc
cagtacacccatctggggagttctgtagcgcgaagagacttaagaatgct
gtgctcatctggtgtctatacgtcacagagatccacgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-090H17.b_49_519 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTAGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      ||||| |||||||||||||| |||||||||||||||| ||||||||||||
seq2  ATAAACAAGGCTGCTATGAACATAGTGGAGCATGTGTTCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| |||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| ||||||||| || ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCATACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||| ||||| ||||||||| ||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCAGCAACATTGGAGGAGTATTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCGTTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471

seq1: chr5_15052811_15053745
seq2: B6Ng01-090H17.g_68_1008

seq1  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50

seq1  ACATACATACATACATACATACATACATACACACATACACACATACACAC  100
      ||||||||||||||| | ||||| |||||||||||||||| |||||||||
seq2  ACATACATACATACACATATACACACATACACACATACACCCATACACAC  100

seq1  ATACACACATACACACATACACACACAAACACACAC--------------  136
      ||||||||| ||||||| ||||||||| ||||||||              
seq2  ATACACACACACACACACACACACACACACACACACACACACACACACAT  150

seq1  ACACACATACACACATACACACATACACACATACAATTGGTTTGTCTGTT  186
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACACACATACACACATACACACATACACACATACAATTGGTTTGTCTTTT  200

seq1  TAGTTTTGGATGGGTTTGAGGTGTCGTTGTTGTTGGTTTCTTTTTGAAAC  236
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  TAGTTTTGGATGGGTTTGAGGTGTGGTTGTTGTTGGTTTGTTTTTGAAAC  250

seq1  AGA----GTCTATGTAGCCTTGGCTGTCATGGAATTTGCTTTGTAAACCA  282
      |||    |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGTCTATGTAGCCTTGGCTGTCATGGAATTTGCTTTGTAAACCA  300

seq1  GGCTGGCCTCAAATTTAGAGATTCACCTTCTTCTGTCTTCTAAGACCTAG  332
      ||||||||||||||| ||||||||||||||||||||||||| ||| ||||
seq2  GGCTGGCCTCAAATTCAGAGATTCACCTTCTTCTGTCTTCTGAGAACTAG  350

seq1  TAGTCAAGTCTCCACGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGTCTCCACGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTG  400

seq1  GACATTTGTCTACTTTATCTTTTCTATTAAGATAGAAAGAAGATAGCCTA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGTCTACTTTATCTTTTCTATTAAGATAGAAAGAAGATAGCCTA  450

seq1  TTATTCAAAATTACTCGGAAAATTATTTTATAGTCAGTCATGGCTGGAAT  482
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  TTATTCAAATTTACTCAGAAAATTATTTTATAGTCAGTCATGGCTGGAAT  500

seq1  GCAGATATAAAAAAATCAGATTGTTTGGAACTGAAAAAAAAAAAGATAAA  532
      |||||||||||||||||||||||||||||||||     ||||||||||||
seq2  GCAGATATAAAAAAATCAGATTGTTTGGAACTG-----AAAAAAGATAAA  545

seq1  AAGTTTAAGAAACTCTTTAAAAATTTCCCTTTTCAAAACTGGCTGGCCAT  582
      ||||| ||||||| |||||||||| ||  || ||  |||| ||||| | |
seq2  AAGTTCAAGAAACACTTTAAAAATATCTTTTCTCTTAACTAGCTGGTCGT  595

seq1  TCATACAGCTCATGAATCTTAAGGTTTAACAATATAAGTGAGTAGCCTCA  632
      |||||||||||||||||||||| || ||||||||| | ||||||||||||
seq2  TCATACAGCTCATGAATCTTAATGTGTAACAATATTATTGAGTAGCCTCA  645

seq1  GCTTATTTCAGTTTGTCTTAAATTTAATTTAGGTTTAATCATGTGTCTAT  682
      |||||||||||||||||||| ||| ||| |||||| ||||||||||||||
seq2  GCTTATTTCAGTTTGTCTTACATTAAATATAGGTTGAATCATGTGTCTAT  695

seq1  AGACCTGTACTTTTATCATTGTGTTATTTTTCCTTATAACTTAACTGTTA  732
      ||||||| ||||||||||| |||||||||||||| |||||| ||||| | 
seq2  AGACCTGCACTTTTATCATCGTGTTATTTTTCCTCATAACTAAACTGCTG  745

seq1  ACATTAATAGACCT-CAAAAAAATAAATACATTTAAATCCGATGAGCACA  781
      |||| ||||||||| |||||||||| ||||||||| ||||||||||||||
seq2  ACATCAATAGACCTCCAAAAAAATATATACATTTATATCCGATGAGCACA  795

seq1  AGATGTTCAGAATTGTTAGCAAACGTCTTGCTTTTGTTACTGTAGCTTCT  831
      ||||||||||||||| ||||| |||||| |||||||| ||||||||||||
seq2  AGATGTTCAGAATTG-TAGCACACGTCTCGCTTTTGTCACTGTAGCTTCT  844

seq1  AGGCCCCAAGTACAGCCATTCTGGGGATTTCTGTTAGCGCCGAAGTGACT  881
      | ||||| |||||| ||| |||||||| ||||| ||||| ||||| ||||
seq2  ACGCCCC-AGTACACCCA-TCTGGGGAGTTCTG-TAGCG-CGAAGAGACT  890

seq1  TAGGAATTGCCTTGCTCATCTGGTGTCTTACACGTCACAGAGAATCCAAG  931
      || ||| |||  ||||||||||||||| || ||||||||||| ||||| |
seq2  TAAGAA-TGCTGTGCTCATCTGGTGTC-TATACGTCACAGAG-ATCCACG  937

seq1  TGAC  935
      ||||
seq2  TGAC  941