BAC Information

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BAC

Clone NameB6Ng01-090I19
Chromosome5 (Build37)6 (Build37)
Map Location 20,871,735 - 20,872,913110,852,387 - 110,852,796
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
Downstream geneFgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090I19.bB6Ng01-090I19.g
ACCDH902817DH902818
length1,175951
definitionDH902817|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I19, 5' end.DH902818|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,871,735 - 20,872,913)(110,852,387 - 110,852,796)
sequence
gaattctacatcttgatccaaaggtagcaggaggaggctatgttccacac
tgggcatagtttgagcgtataaaagacctcaaagcccacccccacagtga
cacacttcctccaccaaggcaaaacctaccccaacaaggccatacttccc
aacaaagcccctccctgtggccaagcagtcacacacatgagtctatgggg
gtggggggcaagccaccacagtgatgaactggaacatcatatccaataaa
gtatgtggctagcacatttaggaactctcaattatttttgaaagacttaa
ggaaattgtattacattctccagaacactgtacttagtttagatgtggag
aaatcctattttcataggagtttcttttaaattttctaacattaaaggta
caatctggatgaaataatcataaacactaggccatgcttgcagtgtctgt
caggctgatggcttccctcagctctgaaggacaatgctggtaggatgaac
attatggaggttttaaggcactaggtcaaggcagcttcagacagctatgt
aatagttctagttgctgaataaactctaccagctccttgttctattttat
gttacttaattctcctcagacccgacaatgctagttttgcaatttcctat
gctaacagccctttaaagtacagaaagctcaagaaattatagtgtattgt
tatgatagcaaacagttcacagcagcattccttgcaacatctggggattg
tgtctgttggctaaaaatgtgcagttttgtaaagctgagctatttggaac
ttggatagcctaaaagtttatttaactttgtcaatggacattatcacata
agctgaagcagctatcccaaagactggccaccatggagtagaggggtggc
ttctgcctgatgctctgaggctctgaatctcccacccccacccctggtct
caccactcaggttcactttcatttccccacttctcgctgctgtttcctct
gtaaccctctcccattccttcatctccttgggacagacttaattccattc
cacttgtattttcgtctactgtggggatctattttgggtggaagtgggag
aaaaattgaaaaaagggcccattaccagccatcacagtcgaggttttggg
agatattagagacaacctaagccgc
gaattctcagctatctctccagcaccacttgtgcctttgtggcgccaggc
tccttgttgtgatgataatggactaaacctctgaacattaagccagcttc
aatcaaatgtttttctttaaaaagagttactgtggtcgtggtgtctgtct
tagtcagggtttttattcctgcacaaacttcatgaccaagaagcaagttg
gggaggaaagggtttattcagcttacatttccacattgctgttcatcact
gaaaaaagtcaggactggaactcaagtaggttaggaagcaggagctgatg
cagaggccatggagggatgttacttactggcttgcttcccctggcttgct
cagcctgctctcttatagaacccaagactaccagcccagagatggtccca
cccacaaggggcctttcccccttgatcactaattgagaaaatgccttaca
gttgtatctcatggaggcatttcctcaactgaagctcctttctctgtgat
aactccagctgtatcaagttgacacaaaactagccaatacagtgtctctt
cacagcaataaaacattgactaagacacctacttttatatttttatttat
gtttatttacttaagaatattttattttattttattttatttttgacaca
gggtttttgtgtgtagccctggctatgctggagaccagccttgaactcag
agctccacctgcctctgtctcccaagtgctggaattaaagatgtgtggcc
accgcacccagctggaggtctgatttttaaaacagtttggtaagataaga
aatgtaacagattttgagggaaagattgcaggttcccaggagagtgtggg
atattcatgtaaacggcttaagagagaggcagaggggttgtcactctcat
gagctcgtggctgtggctgtgggaaagctcccctggaagacttgagaggg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_20871735_20872913
seq2: B6Ng01-090I19.b_48_1222

seq1  GAATTCTACATCTTGATCCAAAGGTAGCAGGAGGAGGCTATGTTCCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTGATCCAAAGGTAGCAGGAGGAGGCTATGTTCCACAC  50

seq1  TGGGCATAGTTTGAGCGTATAAAAGACCTCAAAGCCCACCCCCACAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGTTTGAGCGTATAAAAGACCTCAAAGCCCACCCCCACAGTGA  100

seq1  CACACTTCCTCCACCAAGGCAAAACCTACCCCAACAAGGCCATACTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCCTCCACCAAGGCAAAACCTACCCCAACAAGGCCATACTTCCC  150

seq1  AACAAAGCCCCTCCCTGTGGCCAAGCAGTCACACACATGAGTCTATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCCCCTCCCTGTGGCCAAGCAGTCACACACATGAGTCTATGGGG  200

seq1  GTGGGGGGCAAGCCACCACAGTGATGAACTGGAACATCATATCCAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGCAAGCCACCACAGTGATGAACTGGAACATCATATCCAATAAA  250

seq1  GTATGTGGCTAGCACATTTAGGAACTCTCAATTATTTTTGAAAGACTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGCTAGCACATTTAGGAACTCTCAATTATTTTTGAAAGACTTAA  300

seq1  GGAAATTGTATTACATTCTCCAGAACACTGTACTTAGTTTAGATGTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGTATTACATTCTCCAGAACACTGTACTTAGTTTAGATGTGGAG  350

seq1  AAATCCTATTTTCATAGGAGTTTCTTTTAAATTTTCTAACATTAAAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTATTTTCATAGGAGTTTCTTTTAAATTTTCTAACATTAAAGGTA  400

seq1  CAATCTGGATGAAATAATCATAAACACTAGGCCATGCTTGCAGTGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGGATGAAATAATCATAAACACTAGGCCATGCTTGCAGTGTCTGT  450

seq1  CAGGCTGATGGCTTCCCTCAGCTCTGAAGGACAATGCTGGTAGGATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGATGGCTTCCCTCAGCTCTGAAGGACAATGCTGGTAGGATGAAC  500

seq1  ATTATGGAGGTTTTAAGGCACTAGGTCAAGGCAGCTTCAGACAGCTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGAGGTTTTAAGGCACTAGGTCAAGGCAGCTTCAGACAGCTATGT  550

seq1  AATAGTTCTAGTTGCTGAATAAACTCTACCAGCTCCTTGTTCTATTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCTAGTTGCTGAATAAACTCTACCAGCTCCTTGTTCTATTTTAT  600

seq1  GTTACTTAATTCTCCTCAGACCCGACAATGCTAGTTTTGCAATTTCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAATTCTCCTCAGACCCGACAATGCTAGTTTTGCAATTTCCTAT  650

seq1  GCTAACAGCCCTTTAAAGTACAGAAAGCTCAAGAAATTATAGTGTATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGCCCTTTAAAGTACAGAAAGCTCAAGAAATTATAGTGTATTGT  700

seq1  TATGATAGCAAACAGTTCACAGCAGCATTCCTTGCAACATCTGGGGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGCAAACAGTTCACAGCAGCATTCCTTGCAACATCTGGGGATTG  750

seq1  TGTCTGTTGGCTAAAAATGTGCAGTTTTGTAAAGCTGAGCTATTTGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTGGCTAAAAATGTGCAGTTTTGTAAAGCTGAGCTATTTGGAAC  800

seq1  TTGGATAGCCTAAAAGTTTATTTAACTTTGTCAATGGACATTATCACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAGCCTAAAAGTTTATTTAACTTTGTCAATGGACATTATCACATA  850

seq1  AGCTGAAGCAGCTATCCCAAAGACTGGCCACCATGGAGTAGAGGGGTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGCAGCTATCCCAAAGACTGGCCACCATGGAGTAGAGGGGTGGC  900

seq1  TTCTGCCTGATGCTCTGAGGCTCTGAATCTCCCACCCCCACCCCTGGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTGATGCTCTGAGGCTCTGAATCTCCCACCCCCACCCCTGGTCT  950

seq1  CACCACTCAGGTTCACTTTCATTTCCCCACTTCTCGCTGCTGTTT-CTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACCACTCAGGTTCACTTTCATTTCCCCACTTCTCGCTGCTGTTTCCTCT  1000

seq1  GTAACCCTTCTCCCATTCCTTCATCTCCTTGGGACAGACTTAATTCCATT  1049
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCC-TCTCCCATTCCTTCATCTCCTTGGGACAGACTTAATTCCATT  1049

seq1  CCAC-TGTATTTTCGTCTACTGTGGGGATCTATTTTGGGTGGAGATGGGA  1098
      |||| ||||||||||||||||||||||||||||||||||||||  |||||
seq2  CCACTTGTATTTTCGTCTACTGTGGGGATCTATTTTGGGTGGAAGTGGGA  1099

seq1  GGAAAAATTAGAAAAGATGGACCACATAACGAG-CATCAGATGCTGAGTG  1147
       |||||||| ||||| | ||  | ||| || || ||||| | |  ||| |
seq2  -GAAAAATT-GAAAAAAGGG--CCCATTACCAGCCATCACA-GTCGAG-G  1143

seq1  TTTGGGGAGTAGTGAGGAGCAACCTAAGCCGC  1179
      ||| |||||   | ||   |||||||||||||
seq2  TTTTGGGAGATATTAGAGACAACCTAAGCCGC  1175

seq1: chr6_110852387_110852796
seq2: B6Ng01-090I19.g_213_609 (reverse)

seq1  CTGTACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACAG  50
      ||||| ||||||||||||||||||||||| ||| ||||||||||||||||
seq2  CTGTATTGGCTAGTTTTGTGTCAACTTGATACA-GCTGGAGTTATCACAG  49

seq1  AAAAAGGAGCTTGAGTTGGAGAAATGCCTCCAAGAGATCCTTAGTCTCTT  100
      | |||||||||| |||||  |||||||||||| ||||| |          
seq2  AGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATAC----------  89

seq1  GGAAATGTAAGAAATTTTCTCAACTAGTGGTCAAGGGGGGAGGTCCCCTT  150
        || ||||||  |||||||||| ||||| ||||||||| | | ||||||
seq2  --AACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTT  137

seq1  GTGGGTGGTGCCATCTCTGGGCTGGTAGTCTT-GATTCTATAAGAGAGCA  199
      ||||||||  |||||||||||||||||||||| | |||||||||||||||
seq2  GTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCA  187

seq1  GGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGTAACATCGCTCCATGGC  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGTAACATCCCTCCATGGC  237

seq1  CTCTGCATCTGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTGCTGACTT  299
      ||||||||| ||||||||||||| |||| ||||||||||||| |||||||
seq2  CTCTGCATCAGCTCCTGCTTCCTAACCTACTTGAGTTCCAGTCCTGACTT  287

seq1  CCTTCAGTGATGAACAGCAATGTGGAAGTGTAAGCTGAATAAACATTTTC  349
        ||||||||||||||||||||||||| ||||||||||||||||  ||||
seq2  TTTTCAGTGATGAACAGCAATGTGGAAATGTAAGCTGAATAAACCCTTTC  337

seq1  CTCCCAAATTTGATTCTTGGTCATGGTGTTTTGTCCAGGAATAGAAACCC  399
      ||||| || ||| ||||||||||||  | ||||| |||||||| ||||||
seq2  CTCCCCAACTTGCTTCTTGGTCATGAAG-TTTGTGCAGGAATAAAAACCC  386

seq1  TGACTAAGACA  410
      |||||||||||
seq2  TGACTAAGACA  397