BAC Information

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BAC

Clone NameB6Ng01-090I23
Chromosome5 (Build37)
Map Location 47,577,405 - 47,705,928
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090I23.bB6Ng01-090I23.g
ACCDH902825DH902826
length1,137679
definitionDH902825|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I23, 5' end.DH902826|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,704,776 - 47,705,928)(47,577,405 - 47,578,083)
sequence
gaattcacttccagaaaaatatgttctaaaaatttcactaatgtcagatt
tttagctttaaaagtatagaccataaatattaggtctaataaatatgcac
acaacacttctacatatatgcatgtatatacacatctgttattgaggcta
agatgattcaatatttttactgatcatttttattacaaagttcaacatca
atttttatctaaggatttcctatcttattattggctatctaaattaaatg
ctttatggagagataattattttttatttcattcaacttcccacatttat
tagtggacagtttttctatcaaaaattatgtcttatcctcatttcttctt
ctcagtatattagattttaattttaatactttagtttaaaattgaaactt
cataagctatataattagattttaagtaaaatgaatttttaataatcatg
actttatgaatatgctacacagatgatcaaacctaaaatgtccctttaat
ttccttttgtaaccagctttacatcaaaatacatttttgtgaactactaa
ctgcaaaagattgaacaacaaaaattcgattacctgatcttattttatta
caataaataacacataatctaacttcaagctattaattttcaaaacttta
catagttatataatgtttacacaaatctgaaactttatatccatcaaata
acaatttctcagtgtttaaaatatgtaggtactgatcaatgtatgtatgt
taattttatgtcactgtgaccaaaatattagacataaacaacaaaaagca
gtttataattattgtgcccatggttagaaactaactttccatggcaggaa
aggtgttgtatagaaaagcttttctgtcataatgaggagaaatggaataa
ctatactcaaatgcttttcccttccttcttcattctgtccaggttcccag
tacacatctagtgacactctatcaagtgatatttcccatcatcagctaag
tgtgtctaacatctcctgagtgatcatgatcaatcagtttaaaataaaga
taaaatataataacttttctaaataacatattttagattactgcttaaag
aaatccatatctgtttctgatgactgatattcctaaa
gaattctttaggaggattggcaagcagcagattggggaaaagggactctt
ctgatagtcatgatgacaacatgcttctgggaatgcaggttgcaaaggac
aggtaaatggagtacatagggaatgtgttggagctcagtccttctagact
taattggggatccagcaagcaagtgattgaagggtggtgggcatcccggg
tgttaagccggcctccagggatgcatcaaagataatgggtcataacatgg
gctatagttataacaacaaattaataaatgtatagaacatcttgctaaaa
gcattataaagtctttttttttaaattgttttctataactgtctcttgtg
aggctatgccagggcctggcaaatacagaagtggatgttcacagtcatct
attggatggaacacagggtccccaatgaaggagctagagaaagtacccaa
ggagctgaaggggttttcagccctatagaagaaacaacaatatgaactaa
ccagtacctcaagagcttgtgtctctagctgcttatgtagcagaggatgg
cctagtcggccatcagtgggaggagaggcccttggtcttgtgaagatgtt
aggccccagtataggggaaagctagggctaggaagcaggagtgggtgggt
tgaagagcagggggcggggggagggtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47704776_47705928
seq2: B6Ng01-090I23.b_51_1187 (reverse)

seq1  TTTATGAATATCAGTCCATCAAGAAACAGATATGAATATTCTATAAGCAG  50
      |||| |||||||||| |||| ||||||||||||| || |||| |||||||
seq2  TTTAGGAATATCAGT-CATC-AGAAACAGATATGGAT-TTCTTTAAGCAG  47

seq1  TATACTAAAATATGTTATTTTAAGAAAAGTTATTATATTTAATCTTTATT  100
      ||  ||||||||||||||||  |||||||||||||||||| |||||||||
seq2  TAATCTAAAATATGTTATTT--AGAAAAGTTATTATATTTTATCTTTATT  95

seq1  TTAAACTGGATTGGATTCATGATCACTCAGGAGATTGTTAAGACACACTT  150
      ||||||| |||||   |||||||||||||||||| |||| ||||||||||
seq2  TTAAACT-GATTG--ATCATGATCACTCAGGAGA-TGTT-AGACACACTT  140

seq1  AGCTGATGATGGGGAAATATCAACTTTGATAGAGTGTCACTAGAATGTGT  200
      |||||||||| |||||||||||   |||||||||||||||||| ||||||
seq2  AGCTGATGAT-GGGAAATATCA--CTTGATAGAGTGTCACTAG-ATGTGT  186

seq1  ACTGGGAACCTGGACAGAATGAAGAAGGAAGGGGAAAAGCATTTGAGTAT  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTGGGAACCTGGACAGAATGAAGAAGGAA-GGGAAAAGCATTTGAGTAT  235

seq1  AGTTATTCCATTTTCTCCTCATTATGACAGAAAAGCTTTTCTATACAACA  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCCA-TTTCTCCTCATTATGACAGAAAAGCTTTTCTATACAACA  284

seq1  CCTTTCCTGCCATGGAAAGTTAGTTTCTAACCATGGGCACAATAATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGCCATGGAAAGTTAGTTTCTAACCATGGGCACAATAATTATA  334

seq1  AACTGCTTTTTGTTGTTTATGTCTAATATTTTGGTCACAGTGACATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTTTTGTTGTTTATGTCTAATATTTTGGTCACAGTGACATAAAA  384

seq1  TTAACATACATACATTGATCAGTACCTACATATTTTAAACACTGAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATACATACATTGATCAGTACCTACATATTTTAAACACTGAGAAAT  434

seq1  TGTTATTTGATGGATATAAAGTTTCAGATTTGTGTAAACATTATATAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGATGGATATAAAGTTTCAGATTTGTGTAAACATTATATAACT  484

seq1  ATGTAAAGTTTTGAAAATTAATAGCTTGAAGTTAGATTATGTGTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGTTTTGAAAATTAATAGCTTGAAGTTAGATTATGTGTTATTTA  534

seq1  TTGTAATAAAATAAGATCAGGTAATCGAATTTTTGTTGTTCAATCTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAAAATAAGATCAGGTAATCGAATTTTTGTTGTTCAATCTTTTG  584

seq1  CAGTTAGTAGTTCACAAAAATGTATTTTGATGTAAAGCTGGTTACAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGTAGTTCACAAAAATGTATTTTGATGTAAAGCTGGTTACAAAAG  634

seq1  GAAATTAAAGGGACATTTTAGGTTTGATCATCTGTGTAGCATATTCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAGGGACATTTTAGGTTTGATCATCTGTGTAGCATATTCATAA  684

seq1  AGTCATGATTATTAAAAATTCATTTTACTTAAAATCTAATTATATAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGATTATTAAAAATTCATTTTACTTAAAATCTAATTATATAGCTT  734

seq1  ATGAAGTTTCAATTTTAAACTAAAGTATTAAAATTAAAATCTAATATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTTCAATTTTAAACTAAAGTATTAAAATTAAAATCTAATATACT  784

seq1  GAGAAGAAGAAATGAGGATAAGACATAATTTTTGATAGAAAAACTGTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAGAAATGAGGATAAGACATAATTTTTGATAGAAAAACTGTCCA  834

seq1  CTAATAAATGTGGGAAGTTGAATGAAATAAAAAATAATTATCTCTCCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAATGTGGGAAGTTGAATGAAATAAAAAATAATTATCTCTCCATA  884

seq1  AAGCATTTAATTTAGATAGCCAATAATAAGATAGGAAATCCTTAGATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTAATTTAGATAGCCAATAATAAGATAGGAAATCCTTAGATAAA  934

seq1  AATTGATGTTGAACTTTGTAATAAAAATGATCAGTAAAAATATTGAATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGTTGAACTTTGTAATAAAAATGATCAGTAAAAATATTGAATCA  984

seq1  TCTTAGCCTCAATAACAGATGTGTATATACATGCATATATGTAGAAGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCTCAATAACAGATGTGTATATACATGCATATATGTAGAAGTGT  1034

seq1  TGTGTGCATATTTATTAGACCTAATATTTATGGTCTATACTTTTAAAGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATATTTATTAGACCTAATATTTATGGTCTATACTTTTAAAGCT  1084

seq1  AAAAATCTGACATTAGTGAAATTTTTAGAACATATTTTTCTGGAAGTGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGACATTAGTGAAATTTTTAGAACATATTTTTCTGGAAGTGAA  1134

seq1  TTC  1153
      |||
seq2  TTC  1137

seq1: chr5_47577405_47578083
seq2: B6Ng01-090I23.g_67_745

seq1  GAATTCTTTAGGAGGATTGGCAAGCAGCAGATTGGGGAAAAGGGACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGAGGATTGGCAAGCAGCAGATTGGGGAAAAGGGACTCTT  50

seq1  CTGATAGTCATGATGACAACATGCTTCTGGGAATGCAGGTTGCAAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTCATGATGACAACATGCTTCTGGGAATGCAGGTTGCAAAGGAC  100

seq1  AGGTAAATGGAGTACATAGGGAATGTGTTGGAGCTCAGTCCTTCTAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATGGAGTACATAGGGAATGTGTTGGAGCTCAGTCCTTCTAGACT  150

seq1  TAATTGGGGATCCAGCAAGCAAGTGATTGAAGGGTGGTGGGCATCCCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGGGATCCAGCAAGCAAGTGATTGAAGGGTGGTGGGCATCCCGGG  200

seq1  TGTTAAGCCGGCCTCCAGGGATGCATCAAAGATAATGGGTCATAACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCCGGCCTCCAGGGATGCATCAAAGATAATGGGTCATAACATGG  250

seq1  GCTATAGTTATAACAACAAATTAATAAATGTATAGAACATCTTGCTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTTATAACAACAAATTAATAAATGTATAGAACATCTTGCTAAAA  300

seq1  GCATTATAAAGTCTTTTTTTTTAAATTGTTTTCTATAACTGTCTCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATAAAGTCTTTTTTTTTAAATTGTTTTCTATAACTGTCTCTTGTG  350

seq1  AGGCTATGCCAGGGCCTGGCAAATACAGAAGTGGATGTTCACAGTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGCCAGGGCCTGGCAAATACAGAAGTGGATGTTCACAGTCATCT  400

seq1  ATTGGATGGAACACAGGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGGAACACAGGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAA  450

seq1  GGAGCTGAAGGGGTTTTCAGCCCTATAGAAGAAACAACAATATGAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAAGGGGTTTTCAGCCCTATAGAAGAAACAACAATATGAACTAA  500

seq1  CCAGTACCTCAAGAGCTTGTGTCTCTAGCTGCTTATGTAGCAGAGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCTCAAGAGCTTGTGTCTCTAGCTGCTTATGTAGCAGAGGATGG  550

seq1  CCTAGTCGGCCATCAGTGGGAGGAGAGGCCCTTGGTCTTGTGAAGATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCGGCCATCAGTGGGAGGAGAGGCCCTTGGTCTTGTGAAGATGTT  600

seq1  AGGCCCCAGTATAGGGGAAAGCTAGGGCTAGGAAGCAGGAGTGGGTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCAGTATAGGGGAAAGCTAGGGCTAGGAAGCAGGAGTGGGTGGGT  650

seq1  TGAAGAGCAGGGGGCGGGGGGAGGGTATA  679
      |||||||||||||||||||||||||||||
seq2  TGAAGAGCAGGGGGCGGGGGGAGGGTATA  679