BAC Information

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BAC

Clone NameB6Ng01-091C20
Chromosome5 (Build37)
Map Location 46,117,754 - 46,264,018
singlet/doubletdoublet
Overlap geneLcorl, LOC100041576
Upstream geneLdb2, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091C20.bB6Ng01-091C20.g
ACCDH903277DH903278
length1,1581,124
definitionDH903277|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C20, 5' end.DH903278|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,117,754 - 46,118,931)(46,262,882 - 46,264,018)
sequence
gaattcttctttgttcactgaaagcatcttatcactgtatgataattttc
ttgaatttttttcactgtaccttcttctcagaaagttttcatcaaaactg
gcaagttctctttttatctgtaaagattgccttctgatcactggtgaatc
aggagagttgtgtattgcaagtaacgtttgttgacgttttcgaaaccttg
tctgaataattttattttctacctttttatcatgttgactcagcagttcc
ataaaactataatcactggctgttgcactgtgcaagagagatgttattaa
atctcccagtttaaaatcattgtctgaatcacaatcagtactagataatt
ttatgaggttagatatatctgtggtttctattgattttaatttttcatta
atacggtccattaaatcttgaaaaattacagctgtctcacccttttcatg
atttgcagtataactaccactggtccccaagagcacagaatcagtgttac
cagacttcttagttttatgtagtttgctgtcatggccacatttgtgagtg
cttatctctgcaggtgtaagagatggaggctggttaatgcttgcctcaag
tttgttattttctacagctgaaagctctgagacgatgtctttccattttt
ccaatcctccagtctccacaggtgataatggtgggggcgagggacttcga
gatctacaggtattttgaagagtgactgaaagatcacaaacttcccgtga
caaaggaggactgtgacaggctggttttgtagactgagtctttgctaatt
gtccacaacagcacctgtgtggattagaactgttttcaattcctcgattc
attactgtcttaatgtgttcaacagttacagtttgacaagacaaacactg
tatttctttaatacagactggcagaggcactagaccagggctttgtctct
cattctgtaaacaccctctttctgccagtctatattcacagctacagaac
agaccatgaaaccatcctcaataggggctttgagattctgaagacatagc
acatgatgatacaacagcaagagagcagcattgctcttgactaaattcac
atagccaaccttgtgatggtaggtatgcaccaagagatccaacttgctta
agctgatt
gaattctttttatctgttgttttgttctctttgtgtctttcaagttggat
gctttctgcaaagggcaatgcatgtgtacaactgaagtccttcactgctt
agggcaagctctgtgtaggtgagaaagttttgatgactgcttgttgtttg
gctttactgaagtgtaatcagaccaaggccagctctgaatcagagggaca
gtcaaatgtcagtgtttgtgagtcttttctgcaaatctgttgaggtttcc
ttaaaatgggtctctagatacccagtaaaaggtgcagacttagttatgtg
ttttctgggaacaatatagaaaaataatgagtaaactttttattcggtat
ctgtgctgagtgtgcattagccccgttctatattatgctcaatagcctca
agtccatagactttgcatgcaactctttcaagagtattttgagacagaag
gctaaatcctgttcccaaaaacattaggaaatagctgtcagatccataaa
tggtgcatagttctgctacatcaaagcatttagcaagtaaaatgacataa
aaggaaattataccctagtttacatcagacattttaatatgaaaaatatt
caatgtgttaactctctgctttaaaacatggctcctattagtatgtggtc
atgtcacatttctgctcctgtctcaatataagggacaacacctaagctgg
gttaggaggaggccatgagaatatgggtgggtaaagatgacagaagtata
ctcttccatgtcgccattgctcgtttgtttcttggaattctaatttgttg
ctttcttgtgtcaactaattgagagtcttgtttgtaccaactgggtatag
gatgcatgtagataaatatagtagtaactttactcattggtgtgtcaaat
atctaacaggagcaatatgaggatggaaaggtttatttcagtccttggag
tcatatggcgatggtcacagcaggaacaaggcaaggcagtatcaggaagt
ggtaatgttctgttgctacttgttcactgtagtggatgggcagacgggga
atagagaaaacagtcaaacaggagcaagacacctccactgactgaactca
tggacaacttctgcctgatatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46117754_46118931
seq2: B6Ng01-091C20.b_41_1198

seq1  GAATTCTTCTTTGTTCACTGAAAGCATCTTATCACTGTATGATAATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTGTTCACTGAAAGCATCTTATCACTGTATGATAATTTTC  50

seq1  TTGAATTTTTTTCACTGTACCTTCTTCTCAGAAAGTTTTCATCAAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTTTTCACTGTACCTTCTTCTCAGAAAGTTTTCATCAAAACTG  100

seq1  GCAAGTTCTCTTTTTATCTGTAAAGATTGCCTTCTGATCACTGGTGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTCTCTTTTTATCTGTAAAGATTGCCTTCTGATCACTGGTGAATC  150

seq1  AGGAGAGTTGTGTATTGCAAGTAACGTTTGTTGACGTTTTCGAAACCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTTGTGTATTGCAAGTAACGTTTGTTGACGTTTTCGAAACCTTG  200

seq1  TCTGAATAATTTTATTTTCTACCTTTTTATCATGTTGACTCAGCAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAATTTTATTTTCTACCTTTTTATCATGTTGACTCAGCAGTTCC  250

seq1  ATAAAACTATAATCACTGGCTGTTGCACTGTGCAAGAGAGATGTTATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATAATCACTGGCTGTTGCACTGTGCAAGAGAGATGTTATTAA  300

seq1  ATCTCCCAGTTTAAAATCATTGTCTGAATCACAATCAGTACTAGATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAGTTTAAAATCATTGTCTGAATCACAATCAGTACTAGATAATT  350

seq1  TTATGAGGTTAGATATATCTGTGGTTTCTATTGATTTTAATTTTTCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGTTAGATATATCTGTGGTTTCTATTGATTTTAATTTTTCATTA  400

seq1  ATACGGTCCATTAAATCTTGAAAAATTACAGCTGTCTCACCCTTTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGTCCATTAAATCTTGAAAAATTACAGCTGTCTCACCCTTTTCATG  450

seq1  ATTTGCAGTATAACTACCACTGGTCCCCAAGAGCACAGAATCAGTGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGTATAACTACCACTGGTCCCCAAGAGCACAGAATCAGTGTTAC  500

seq1  CAGACTTCTTAGTTTTATGTAGTTTGCTGTCATGGCCACATTTGTGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCTTAGTTTTATGTAGTTTGCTGTCATGGCCACATTTGTGAGTG  550

seq1  CTTATCTCTGCAGGTGTAAGAGATGGAGGCTGGTTAATGCTTGCCTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCTGCAGGTGTAAGAGATGGAGGCTGGTTAATGCTTGCCTCAAG  600

seq1  TTTGTTATTTTCTACAGCTGAAAGCTCTGAGACGATGTCTTTCCATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTTCTACAGCTGAAAGCTCTGAGACGATGTCTTTCCATTTTT  650

seq1  CCAATCCTCCAGTCTCCACAGGTGATAATGGTGGGGGCGAGGGACTTCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTCCAGTCTCCACAGGTGATAATGGTGGGGGCGAGGGACTTCGA  700

seq1  GATCTACAGGTATTTTGAAGAGTGACTGAAAGATCACAAACTTCCCGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACAGGTATTTTGAAGAGTGACTGAAAGATCACAAACTTCCCGTGA  750

seq1  CAAAGGAGGACTGTGACAGGCTGGTTTTGTAGACTGAGTCTTTGCTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGGACTGTGACAGGCTGGTTTTGTAGACTGAGTCTTTGCTAATT  800

seq1  GTCCACAACAGCACCTGTGTGGATTAGAACTGTTTTCAATTCCTCGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAACAGCACCTGTGTGGATTAGAACTGTTTTCAATTCCTCGATTC  850

seq1  ATTACTGTCTTAATGTGTTCAACAGTTACAGTTTGACAAGACAAACACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTCTTAATGTGTTCAACAGTTACAGTTTGACAAGACAAACACTG  900

seq1  TATTTCTTTAATACAGACTGGCAGAGGCACTAGACCAGGGCTTTGTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTAATACAGACTGGCAGAGGCACTAGACCAGGGCTTTGTCTCT  950

seq1  CATTCTGTAAACACCCTCTTTCTGCCAGTCTATATTCACAGCTACAGAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTAAACACCCTCTTTCTGCCAGTCTATATTCACAGCTACAGAAC  1000

seq1  AGACCATGAAAACCATCCTCCAATAGGGGCTTTTGAGATTCTGAAGACAT  1050
      |||||||| |||||||||| |||||||||| |||||||||||||||||||
seq2  AGACCATG-AAACCATCCT-CAATAGGGGC-TTTGAGATTCTGAAGACAT  1047

seq1  AGCACATGATGAATTACAACAGCAAAGAGAAGCAGCATTCTGCTCTTGGA  1100
      ||||||||||||  ||||||||| ||||| ||||||||  ||||||| ||
seq2  AGCACATGATGA--TACAACAGC-AAGAG-AGCAGCAT--TGCTCTT-GA  1090

seq1  CTAGAAATTTCAACATAGCCAAAACTTGTTGATGGTGATGTATGCACAAA  1150
      ||  |||||   |||||||| || |||| ||||||| | |||||||| ||
seq2  CT--AAATT--CACATAGCC-AACCTTG-TGATGGT-AGGTATGCACCAA  1133

seq1  GA-TTCCAAAACTTTGCTTAATGCTGATT  1178
      ||  |||||    |||||||| |||||||
seq2  GAGATCCAA---CTTGCTTAA-GCTGATT  1158

seq1: chr5_46262882_46264018
seq2: B6Ng01-091C20.g_65_1188 (reverse)

seq1  GGGATTATCAGGCAGAAGTTGTCACTGAGGTCAAGTCAGTGGAGGTTGTA  50
      |||| ||||||||||||||||||  |||| || |||||||||||| ||| 
seq2  GGGA-TATCAGGCAGAAGTTGTCCATGAGTTC-AGTCAGTGGAGG-TGT-  46

seq1  CCTGCTCCTGGTGTTGGCTTGTTTTCTCTATTCCCCGTCTGCCCATCCAC  100
      | ||||||   |||| |  |||||||||||||||||||||||||||||||
seq2  CTTGCTCC---TGTTTGACTGTTTTCTCTATTCCCCGTCTGCCCATCCAC  93

seq1  TACCAGGTGAACAAGTAGCCACAGAACATTACCACTTCCTGGATACTGCC  150
      |||   ||||||||||||| |||||||||||||||||||| |||||||||
seq2  TAC--AGTGAACAAGTAGCAACAGAACATTACCACTTCCT-GATACTGCC  140

seq1  TTGCCTTGTTCCCTGCTGTGGACCATCGCCATATGACTCCAAGGACTGAA  200
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TTGCCTTGTT-CCTGCTGT-GACCATCGCCATATGACTCCAAGGACTGAA  188

seq1  ATAAACCTTTCCATCCTCATATTGCTCCTGTTAGATATTTTGACACACCA  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATAAACCTTTCCATCCTCATATTGCTCCTGTTAGATA-TTTGACACACCA  237

seq1  ATGAGTAAAGTTACTACTATATTTATCTACATGCATCCTATACCCAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAAAGTTACTACTATATTTATCTACATGCATCCTATACCCAGTTG  287

seq1  GTACAAACAAGACTCTCAATTAGTTGACACAAGAAAGCAACAAATTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAACAAGACTCTCAATTAGTTGACACAAGAAAGCAACAAATTAGAA  337

seq1  TTCCAAGAAACAAACGAGCAATGGCGACATGGAAGAGTATACTTCTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAAACAAACGAGCAATGGCGACATGGAAGAGTATACTTCTGTCA  387

seq1  TCTTTACCCACCCATATTCTCATGGCCTCCTCCTAACCCAGCTTAGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACCCACCCATATTCTCATGGCCTCCTCCTAACCCAGCTTAGGTGT  437

seq1  TGTCCCTTATATTGAGACAGGAGCAGAAATGTGACATGACCACATACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTATATTGAGACAGGAGCAGAAATGTGACATGACCACATACTAA  487

seq1  TAGGAGCCATGTTTTAAAGCAGAGAGTTAACACATTGAATATTTTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCCATGTTTTAAAGCAGAGAGTTAACACATTGAATATTTTTCATA  537

seq1  TTAAAATGTCTGATGTAAACTAGGGTATAATTTCCTTTTATGTCATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTCTGATGTAAACTAGGGTATAATTTCCTTTTATGTCATTTTA  587

seq1  CTTGCTAAATGCTTTGATGTAGCAGAACTATGCACCATTTATGGATCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAAATGCTTTGATGTAGCAGAACTATGCACCATTTATGGATCTGA  637

seq1  CAGCTATTTCCTAATGTTTTTGGGAACAGGATTTAGCCTTCTGTCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTTCCTAATGTTTTTGGGAACAGGATTTAGCCTTCTGTCTCAAA  687

seq1  ATACTCTTGAAAGAGTTGCATGCAAAGTCTATGGACTTGAGGCTATTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTGAAAGAGTTGCATGCAAAGTCTATGGACTTGAGGCTATTGAG  737

seq1  CATAATATAGAACGGGGCTAATGCACACTCAGCACAGATACCGAATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATAGAACGGGGCTAATGCACACTCAGCACAGATACCGAATAAAA  787

seq1  AGTTTACTCATTATTTTTCTATATTGTTCCCAGAAAACACATAACTAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTCATTATTTTTCTATATTGTTCCCAGAAAACACATAACTAAGT  837

seq1  CTGCACCTTTTACTGGGTATCTAGAGACCCATTTTAAGGAAACCTCAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTTTTACTGGGTATCTAGAGACCCATTTTAAGGAAACCTCAACA  887

seq1  GATTTGCAGAAAAGACTCACAAACACTGACATTTGACTGTCCCTCTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCAGAAAAGACTCACAAACACTGACATTTGACTGTCCCTCTGATT  937

seq1  CAGAGCTGGCCTTGGTCTGATTACACTTCAGTAAAGCCAAACAACAAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGCCTTGGTCTGATTACACTTCAGTAAAGCCAAACAACAAGCA  987

seq1  GTCATCAAAACTTTCTCACCTACACAGAGCTTGCCCTAAGCAGTGAAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAAACTTTCTCACCTACACAGAGCTTGCCCTAAGCAGTGAAGGA  1037

seq1  CTTCAGTTGTACACATGCATTGCCCTTTGCAGAAAGCATCCAACTTGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGTACACATGCATTGCCCTTTGCAGAAAGCATCCAACTTGAAA  1087

seq1  GACACAAAGAGAACAAAACAACAGATAAAAAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  GACACAAAGAGAACAAAACAACAGATAAAAAGAATTC  1124