BAC Information

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BAC

Clone NameB6Ng01-091D06
Chromosome5 (Build37)
Map Location 90,117,456 - 90,275,134
singlet/doubletdoublet
Overlap geneAdamts3
Upstream geneMobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091D06.bB6Ng01-091D06.g
ACCDH903295DH903296
length1,0741,155
definitionDH903295|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D06, 5' end.DH903296|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,117,456 - 90,118,551)(90,273,948 - 90,275,134)
sequence
gaattctctactatgaatattttttctgtttattattcagaatttaatta
gatagtgattactgtaactattcttcttgttggggagaattctgttattg
cctatttaatactagagtatttgttgtgcagaaccagacaaacagattgt
taaatatggggtccatctcatggatctggtctggagaaatgagagaagaa
attcagtacagcaaggcagcgtggtactcatctgagctggtctgaatcct
atgtagcgtggtactcagctgagctggtctgaatcctatgtagcgtggta
ctcagctgagctggtctgaatcctatgtattgtggtactcagctgagctg
gtctgaatcctatgtattgtggtactcagctaagctggtctgaatcctat
gtttttggaagaagcacttaccatccctgtgtctcaatttcaccatcatt
ataatgaatattaaaaatagtactgacatcatagagctgctgtgagtatg
gacacacagatcgatcaagcattcagtagagcagtagcatctacaacaca
gtgtaattaggtatacagatggatgtgattaactgagttcttgctagcac
aaacagaaacaatgtgcatacacgcggacaccaagatggagaagaggcag
cagcctcagtaaactggatgggaagaagttttagatttgggggaaagcga
ttaaggttttttttttttttttcatcatcaggagagaattttattttaag
tgtcaccttaaattgcaaggatgtctgttaaaccacacaattaaacatgc
caaaggagaagccatgttatcagatgcccacctaccccagacacctcaaa
cccacccttgctcaccgtctatacccccccttttttcttttttttctttt
cttttataaacaagagaaagtagacagatacatgttggtaatgctaactg
tctgtattcacatagagacacagtgtatctctgagcccatatactgagta
gagaagctaaattctataactactacccaggggcttagcgccctcagcag
agcaagaactgaagctttcttttt
gaattcagaggacaagaaacactgccatggtgtgtcagccactcaacaga
gtgaataataaaaaggtgtcatggtgctttaatgaaagggacactaagtt
atgtaataagtattaggttaagtgacttgggctgggggttggggaacagt
tctttgaagaaggtccagttgtctttgcaaaggaagagaacagtgagact
atagagtcagagtatcagcaatggctgaggtgactggagctttagacgag
agctcctttgttacagctactgtaaatgttgttccattcattctagctaa
aatagaggagcaccatgccagatttccttgtagaaatgatcttaagattg
tcaaaaattcttctttgtacatgagtgtcttcattcagaaagttagggtt
ttattgctgagaagggccatcatgatcgtggcagctcttataaaggaaaa
catgtaactggggctggcttatatttttagaggttcagtccattatcatc
atggtgggaagcatggcagcatccaggcagatatggtgctggaaaaggag
ctgaaagttctacctcttgatctgaaggcatcagaagactgtgtcacact
ggcctgggcataacttcagcataggagccctcaaaggctgcccccacagt
gacacactttctccaataaggccacatctactccaacaagaccataactc
ctaacagtgtccctctctattggccaagcattcaaacacatgagtctgtg
agagccattcctattcaaaccaccacaatgacgagtccagagaactgaga
atcttatcgggtttcacaaaacttctagacacttgctttcagagcctgca
cttttgatcattattttattttgatgcctggtgaagtttcttaatattcc
acctaggcaatttgaattaaacacagatacacaagtgcatatctctgtgc
acaaacggattccttgttttgcatatgtataatgcataaaacctgtgtgt
atcattacataaaatatcccatatagaaatcttgatacatgtgaaatatt
tattatatcttcttattgatttgagacctcaattgattgggggatgcaga
cccagagcagcatggaccctttttttcatacagtctttcaagcgttactg
tgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90117456_90118551
seq2: B6Ng01-091D06.b_48_1121

seq1  GAATTCTCTACTATGAATATTTTTTCTGTTTATTATTCAGAATTTAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTATGAATATTTTTTCTGTTTATTATTCAGAATTTAATTA  50

seq1  GATAGTGATTACTGTAACTATTCTTCTTGTTGGGGAGAATTCTGTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGATTACTGTAACTATTCTTCTTGTTGGGGAGAATTCTGTTATTG  100

seq1  CCTATTTAATACTAGAGTATTTGTTGTGCAGAACCAGACAAACAGATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTAATACTAGAGTATTTGTTGTGCAGAACCAGACAAACAGATTGT  150

seq1  TAAATATGGGGTCCATCTCATGGATCTGGTCTGGAGAAATGAGAGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGGGGTCCATCTCATGGATCTGGTCTGGAGAAATGAGAGAAGAA  200

seq1  ATTCAGTACAGCAAGGCAGCGTGGTACTCATCTGAGCTGGTCTGAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTACAGCAAGGCAGCGTGGTACTCATCTGAGCTGGTCTGAATCCT  250

seq1  ATGTAGCGTGGTACTCAGCTGAGCTGGTCTGAATCCTATGTAGCGTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCGTGGTACTCAGCTGAGCTGGTCTGAATCCTATGTAGCGTGGTA  300

seq1  CTCAGCTGAGCTGGTCTGAATCCTATGTATTGTGGTACTCAGCTGAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGAGCTGGTCTGAATCCTATGTATTGTGGTACTCAGCTGAGCTG  350

seq1  GTCTGAATCCTATGTATTGTGGTACTCAGCTAAGCTGGTCTGAATCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATCCTATGTATTGTGGTACTCAGCTAAGCTGGTCTGAATCCTAT  400

seq1  GTTTTTGGAAGAAGCACTTACCATCCCTGTGTCTCAATTTCACCATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGAAGAAGCACTTACCATCCCTGTGTCTCAATTTCACCATCATT  450

seq1  ATAATGAATATTAAAAATAGTACTGACATCATAGAGCTGCTGTGAGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAATATTAAAAATAGTACTGACATCATAGAGCTGCTGTGAGTATG  500

seq1  GACACACAGATCGATCAAGCATTCAGTAGAGCAGTAGCATCTACAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGATCGATCAAGCATTCAGTAGAGCAGTAGCATCTACAACACA  550

seq1  GTGTAATTAGGTATACAGATGGATGTGATTAACTGAGTTCTTGCTAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTAGGTATACAGATGGATGTGATTAACTGAGTTCTTGCTAGCAC  600

seq1  AAACAGAAACAATGTGCATACACGCGGACACCAAGATGGAGAAGAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAACAATGTGCATACACGCGGACACCAAGATGGAGAAGAGGCAG  650

seq1  CAGCCTCAGTAAACTGGATGGGAAGAAGTTTTAGATTTGGGGGAAAGCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGTAAACTGGATGGGAAGAAGTTTTAGATTTGGGGGAAAGCGA  700

seq1  TTAAGGTTTTTTTTTTTTTTTTCATCATCAGGAGAGAATTTTATTTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTTTTTTTTTTTTTTTCATCATCAGGAGAGAATTTTATTTTAAG  750

seq1  TGTCACCTTAAATTGCAAGGATGTCTGTTAAACCACACAATTAAACATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTTAAATTGCAAGGATGTCTGTTAAACCACACAATTAAACATGC  800

seq1  CAAAGGAGAAGCCATGTTATCAGATGCCCACCTACCCCAGACACCTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGAAGCCATGTTATCAGATGCCCACCTACCCCAGACACCTCAAA  850

seq1  CCCACCCTTGCTCACCGTCTATACCCCCCCTTTTTTTCTTTTTTTTTCTT  900
      |||||||||||||||||||||||||||||| |||||||||||||||   |
seq2  CCCACCCTTGCTCACCGTCTATACCCCCCC-TTTTTTCTTTTTTTT--CT  897

seq1  TTTCTTTTTATTAAACAAGAGAAAGTAGACAGATACATGTTGGTAAATGC  950
      ||||||||   ||||||||||||||||||||||||||||||||| |||||
seq2  TTTCTTTT--ATAAACAAGAGAAAGTAGACAGATACATGTTGGT-AATGC  944

seq1  TAACTGTCTGTATTCACATAGAGACACAGTGTAATCTCTGAGCCCAATAT  1000
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TAACTGTCTGTATTCACATAGAGACACAGTGT-ATCTCTGAGCCC-ATAT  992

seq1  ACAGAGAAAAGAAGAAAAGCTAAAATTCTATAAACTACTACACAGGGGCC  1050
      || |     || ||| ||||| ||||||||| ||||||||| ||||||| 
seq2  ACTG-----AGTAGAGAAGCT-AAATTCTAT-AACTACTACCCAGGGGCT  1035

seq1  TAGCGCCCTCCAGCAGAGCCAAGGGAACTGGAGAGCTTTTCTTTTT  1096
      ||||||||| ||||||||| |   |||||| ||    |||||||||
seq2  TAGCGCCCT-CAGCAGAGCAA---GAACTGAAG---CTTTCTTTTT  1074

seq1: chr5_90273948_90275134
seq2: B6Ng01-091D06.g_69_1223 (reverse)

seq1  GGGCACAGTAACTGTCTGAAAGAAACTGTATGGAAAAAAAAAAAAAAAAA  50
      |||||||||||| |  ||||||  ||||||||           |||||||
seq2  GGGCACAGTAAC-GCTTGAAAG--ACTGTATG-----------AAAAAAA  36

seq1  GAGCTCCAATGCCTGGCTCTGGGCTCCCTGCATCCCCCAAATCCAAATTT  100
      | | ||| ||||   ||||||||    ||||||||||| ||||  |||| 
seq2  G-GGTCC-ATGC--TGCTCTGGG---TCTGCATCCCCC-AATC--AATTG  76

seq1  GAGTCTCAAAATACAATAAGATGATTAATTAATATATATATCACAATGTA  150
        ||||||||   |||||||| |||    ||||| |||| |||| |||||
seq2  AGGTCTCAAA--TCAATAAGAAGAT---ATAATAAATATTTCAC-ATGTA  120

seq1  TCAAGATATCTATATGGGATATTTTATGTAATGATACACACAGGTTTTTA  200
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TCAAGATTTCTATATGGGATATTTTATGTAATGATACACACAGG-TTTTA  169

seq1  TGCATTATACATATGCAAAAACAAGGAATCCGTTTGTGCACAGAGATATG  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCATTATACATATGC-AAAACAAGGAATCCGTTTGTGCACAGAGATATG  218

seq1  CACTTGTGTATCTGTGTTTAATTCAAATTGCCTAGGTGGAATATTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGTATCTGTGTTTAATTCAAATTGCCTAGGTGGAATATTAAGAA  268

seq1  ACTTCACCAGGCATCAAAATAAAATAATGATCAAAAGTGCAGGCTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACCAGGCATCAAAATAAAATAATGATCAAAAGTGCAGGCTCTGAA  318

seq1  AGCAAGTGTCTAGAAGTTTTGTGAAACCCGATAAGATTCTCAGTTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGTCTAGAAGTTTTGTGAAACCCGATAAGATTCTCAGTTCTCTG  368

seq1  GACTCGTCATTGTGGTGGTTTGAATAGGAATGGCTCTCACAGACTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGTCATTGTGGTGGTTTGAATAGGAATGGCTCTCACAGACTCATGT  418

seq1  GTTTGAATGCTTGGCCAATAGAGAGGGACACTGTTAGGAGTTATGGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATGCTTGGCCAATAGAGAGGGACACTGTTAGGAGTTATGGTCTT  468

seq1  GTTGGAGTAGATGTGGCCTTATTGGAGAAAGTGTGTCACTGTGGGGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGTAGATGTGGCCTTATTGGAGAAAGTGTGTCACTGTGGGGGCAG  518

seq1  CCTTTGAGGGCTCCTATGCTGAAGTTATGCCCAGGCCAGTGTGACACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGGGCTCCTATGCTGAAGTTATGCCCAGGCCAGTGTGACACAGT  568

seq1  CTTCTGATGCCTTCAGATCAAGAGGTAGAACTTTCAGCTCCTTTTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATGCCTTCAGATCAAGAGGTAGAACTTTCAGCTCCTTTTCCAGC  618

seq1  ACCATATCTGCCTGGATGCTGCCATGCTTCCCACCATGATGATAATGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATCTGCCTGGATGCTGCCATGCTTCCCACCATGATGATAATGGAC  668

seq1  TGAACCTCTAAAAATATAAGCCAGCCCCAGTTACATGTTTTCCTTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCTAAAAATATAAGCCAGCCCCAGTTACATGTTTTCCTTTATAA  718

seq1  GAGCTGCCACGATCATGATGGCCCTTCTCAGCAATAAAACCCTAACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCACGATCATGATGGCCCTTCTCAGCAATAAAACCCTAACTTTC  768

seq1  TGAATGAAGACACTCATGTACAAAGAAGAATTTTTGACAATCTTAAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAAGACACTCATGTACAAAGAAGAATTTTTGACAATCTTAAGATC  818

seq1  ATTTCTACAAGGAAATCTGGCATGGTGCTCCTCTATTTTAGCTAGAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACAAGGAAATCTGGCATGGTGCTCCTCTATTTTAGCTAGAATGA  868

seq1  ATGGAACAACATTTACAGTAGCTGTAACAAAGGAGCTCTCGTCTAAAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAACATTTACAGTAGCTGTAACAAAGGAGCTCTCGTCTAAAGCT  918

seq1  CCAGTCACCTCAGCCATTGCTGATACTCTGACTCTATAGTCTCACTGTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACCTCAGCCATTGCTGATACTCTGACTCTATAGTCTCACTGTTC  968

seq1  TCTTCCTTTGCAAAGACAACTGGACCTTCTTCAAAGAACTGTTCCCCAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTGCAAAGACAACTGGACCTTCTTCAAAGAACTGTTCCCCAAC  1018

seq1  CCCCAGCCCAAGTCACTTAACCTAATACTTATTACATAACTTAGTGTCCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCAAGTCACTTAACCTAATACTTATTACATAACTTAGTGTCCC  1068

seq1  TTTCATTAAAGCACCATGACACCTTTTTATTATTCACTCTGTTGAGTGGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAAGCACCATGACACCTTTTTATTATTCACTCTGTTGAGTGGC  1118

seq1  TGACACACCATGGCAGTGTTTCTTGTCCTCTGAATTC  1187
      |||||||||||||||||||||||||||||||||||||
seq2  TGACACACCATGGCAGTGTTTCTTGTCCTCTGAATTC  1155