BAC Information

Click to search

BAC

Clone NameB6Ng01-091G01
Chromosome5 (Build37)
Map Location 17,574,087 - 17,575,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
Downstream geneGnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091G01.bB6Ng01-091G01.g
ACCDH903418DH903419
length1,1691,162
definitionDH903418|Mus musculus domesticus DNA, BAC clone: B6Ng01-091G01, 5' end.DH903419|Mus musculus domesticus DNA, BAC clone: B6Ng01-091G01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacccgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaagagctaaagggatctgcaccctat
aggtggaacaacattatgagctaccagtacccggagcttcttggactcta
gctgctattaatcaaagatgcctaattcgcctcactgtaagagaggccat
tggacttgcaaccttatttgcccattcagggaatacatggccaaaaaggg
ggtatgggtgggctgggga
gaattcaaaactcaattacagtcagtccattaatttgaattactatggca
gctaaaatgctaatgttaaacaataacttgtaacttcagagttaaatatg
aactataataagtgaattagtcagttttgaaagttgccataatgtttatt
ttgcaggcaatagcaaagtaggacttcggagcaagctttgctttgagtag
ggacatagcaggccgctcacctcaaggctggtctgttcagctactcccta
aggttacatccttagcagatcccttatgcatcttcacatttggacttttt
ttatctccacattcagcttgcgtgtatggtgattattaacccatgaagag
aatgagaagactgggggcaagtttgggaatagctgcaatacctgatatgt
gatgtaatgtaacagttaatcatatatgtacatgaaaacaccaaggctaa
tatgaacaactagtctggtcaggcatctgtaaaacttagatcctatttat
agttaactatgatgccaatataaacactgctccatgacactacctccaat
tattctgagttttttacatttgtttgaaaatatcttagtaatttactttc
agtcttctaatgaagatgtcataaatcgaaatgcaaaatcattcactagt
taaaaaagtagctctttggaaatttgtattgctttgcatcattttaatat
agtacaatgttgtgacaatctctattgtccattgctatgccaactaaatt
cataagaagcctctctgagaataagcacatgtgctttaatgtgctcaaag
aaaagattatatgaaactacatatacataaaatcctctagctaaataaga
gcttaagaccattagatagaaatcgccaaaggaaaatgggttacttggaa
aataaaaaagttttttttttctttttttttaattagtattatttcattta
catttaaatgctatccaaaagtccccgcaccctccccaccactccccacc
accactcccacttcttggcttgtgttccctgtactgagcatataaagttt
gcatgacaatggctctcttttaactgatgcagctaggcatcattcggaat
cattgcagctaagaaaacaggctctggggggacttgtagatctaattgtt
gttccacatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17574087_17575269
seq2: B6Ng01-091G01.g_69_1230 (reverse)

seq1  CCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCACAGAGCTCGT  50
      |||||  |||||||||||||  || || || ||| |||| ||||||  ||
seq2  CCTAT--GTGGAACAACAATTAGATCT-ACAAGT-CCCCCCAGAGCCTGT  46

seq1  GTCTCTAGCTGCATATGTATCAGAA-GATGGCCTAGCTGGCCATCAGTGG  99
       |   |||||||| |||  || ||| ||| |||||||||  |||||||  
seq2  TTTCTTAGCTGCA-ATGATTCCGAATGAT-GCCTAGCTG--CATCAGTTA  92

seq1  AAAGAGAAGCCCATTGGTCATGCAAACTTTATATGCTTCAGTACAGGGGA  149
      |||||||   ||||| |||||||||||||||||||| |||||||| ||||
seq2  AAAGAGA--GCCATT-GTCATGCAAACTTTATATGC-TCAGTACA-GGGA  137

seq1  ACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTGGGGGAGTGGGTGGGGGA  199
      |||| |  |||||||||||||||| |||||   |||||||||   |||||
seq2  ACACAA--GCCAAGAAGTGGGAGT-GGTGG--TGGGGAGTGG--TGGGGA  180

seq1  GGGTGCGGGGGACTTTTGGGATAGCATTTAAATGTAAATGAAATAAATAC  249
      |||||| |||||||||| |||||||||||||||||||||||||| |||| 
seq2  GGGTGC-GGGGACTTTT-GGATAGCATTTAAATGTAAATGAAAT-AATA-  226

seq1  CTAATTAAAAAAAA--GAAAAAAAAACTTTTTTATTTTCCAAGTAACCCA  297
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  CTAATTAAAAAAAAAGAAAAAAAAAACTTTTTTATTTTCCAAGTAACCCA  276

seq1  TTTTCCTTTGGCGATTTCTATCTAATGGTCTTAAGCTCTTATTTAGCTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTGGCGATTTCTATCTAATGGTCTTAAGCTCTTATTTAGCTAG  326

seq1  AGGATTTTATGTATATGTAGTTTCATATAATCTTTTCTTTGAGCACATTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTATGTATATGTAGTTTCATATAATCTTTTCTTTGAGCACATTA  376

seq1  AAGCACATGTGCTTATTCTCAGAGAGGCTTCTTATGAATTTAGTTGGCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATGTGCTTATTCTCAGAGAGGCTTCTTATGAATTTAGTTGGCAT  426

seq1  AGCAATGGACAATAGAGATTGTCACAACATTGTACTATATTAAAATGATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGACAATAGAGATTGTCACAACATTGTACTATATTAAAATGATG  476

seq1  CAAAGCAATACAAATTTCCAAAGAGCTACTTTTTTAACTAGTGAATGATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAATACAAATTTCCAAAGAGCTACTTTTTTAACTAGTGAATGATT  526

seq1  TTGCATTTCGATTTATGACATCTTCATTAGAAGACTGAAAGTAAATTACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCGATTTATGACATCTTCATTAGAAGACTGAAAGTAAATTACT  576

seq1  AAGATATTTTCAAACAAATGTAAAAAACTCAGAATAATTGGAGGTAGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTTCAAACAAATGTAAAAAACTCAGAATAATTGGAGGTAGTGT  626

seq1  CATGGAGCAGTGTTTATATTGGCATCATAGTTAACTATAAATAGGATCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCAGTGTTTATATTGGCATCATAGTTAACTATAAATAGGATCTA  676

seq1  AGTTTTACAGATGCCTGACCAGACTAGTTGTTCATATTAGCCTTGGTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACAGATGCCTGACCAGACTAGTTGTTCATATTAGCCTTGGTGTT  726

seq1  TTCATGTACATATATGATTAACTGTTACATTACATCACATATCAGGTATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTACATATATGATTAACTGTTACATTACATCACATATCAGGTATT  776

seq1  GCAGCTATTCCCAAACTTGCCCCCAGTCTTCTCATTCTCTTCATGGGTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTATTCCCAAACTTGCCCCCAGTCTTCTCATTCTCTTCATGGGTTA  826

seq1  ATAATCACCATACACGCAAGCTGAATGTGGAGATAAAAAAAGTCCAAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACCATACACGCAAGCTGAATGTGGAGATAAAAAAAGTCCAAATG  876

seq1  TGAAGATGCATAAGGGATCTGCTAAGGATGTAACCTTAGGGAGTAGCTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGCATAAGGGATCTGCTAAGGATGTAACCTTAGGGAGTAGCTGA  926

seq1  ACAGACCAGCCTTGAGGTGAGCGGCCTGCTATGTCCCTACTCAAAGCAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAGCCTTGAGGTGAGCGGCCTGCTATGTCCCTACTCAAAGCAAA  976

seq1  GCTTGCTCCGAAGTCCTACTTTGCTATTGCCTGCAAAATAAACATTATGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCCGAAGTCCTACTTTGCTATTGCCTGCAAAATAAACATTATGG  1026

seq1  CAACTTTCAAAACTGACTAATTCACTTATTATAGTTCATATTTAACTCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCAAAACTGACTAATTCACTTATTATAGTTCATATTTAACTCTG  1076

seq1  AAGTTACAAGTTATTGTTTAACATTAGCATTTTAGCTGCCATAGTAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAAGTTATTGTTTAACATTAGCATTTTAGCTGCCATAGTAATTC  1126

seq1  AAATTAATGGACTGACTGTAATTGAGTTTTGAATTC  1183
      ||||||||||||||||||||||||||||||||||||
seq2  AAATTAATGGACTGACTGTAATTGAGTTTTGAATTC  1162