BAC Information

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BAC

Clone NameB6Ng01-091K11
Chromosome5 (Build37)
Map Location 84,872,707 - 85,026,232
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091K11.bB6Ng01-091K11.g
ACCDH903620DH903621
length8291,122
definitionDH903620|Mus musculus domesticus DNA, BAC clone: B6Ng01-091K11, 5' end.DH903621|Mus musculus domesticus DNA, BAC clone: B6Ng01-091K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,872,707 - 84,873,535)(85,025,094 - 85,026,232)
sequence
gaattcttgtctaatgtcataaaaatgtcacctagtgaatggcagaggtg
aggagaggttgttgccaccacatctttaacttctagctgtgctgtgctgt
actctgggcatctccttagacctcaatctctttctttaatccactgcttc
tatgtcattcactacttatagaaagaggttattttgaatgtttttttgtt
tgtttttgtggggttttttttgttttgttttctgaaattttaggatatat
atcaaagatcagaagcaaagggatgcaggtaataccctgggtcattgcca
aaaatatatgtgacttttcccttagacacaagctttcttcaaatctttca
tatcttaaaataagtaaacacaatctctttgtgactgttaaacctaacta
gatagactcttctttatttgcattttttacatgcagacatcaagtatgac
ccacaccatttgttgaagaaactgtcttctttcaacagtgcatttctggc
ttctttattataagaaagccaaactaaacaaaagcaagcaagcaaacaaa
caaacaaacaacccaaacatttgtagatatgtggatttgtatctgggtct
tcaattctattttagtgataaatgtgagtgtttctatggcaagactttgt
gtattttattactatagctctgtagttcaatataaaattgggaatggcta
aatatgcaaaagttgtttttattattcagtactgtttaactatcctgaca
tgtctgcatgtgtgtgtgtgtttagttgtttttttgtttatttgttgttt
gtttgtctcattgagactaaccctttcaa
gttttgccctggaatattttggtttctccatctatgttgattgaaagttt
tgatgggtatagtagcctggactggcatttgtgttctcttagagtctgca
tgacctttgaccaggatcttctgactttcgtagtctctgttgaaaagtct
agaatgataggtctacttttatttgttacttggtctttttcccttgctgc
ttttaatattctttctttactctgtgcatttaagaaacaagctataaaga
attcattagttatgaattacatatttacaaattgctaaaatattaaagta
acctctattgaataagcacttatacgttaaggctgagaatgtttgtatgg
ttgtatgttgattggtgtacactcattatctcacttaattgttataaaaa
ttcacactaatgcataaaactgtaaaataagttttactcttattttcttc
aaagttatcaataatttaatttgtgacttccttttgaaatctgaaagaat
tcaattgaatatttatactaatgtgtaagtctttccatcttattacgaag
ttctaagagctggacaatctgatcaaatgattttttttttcctgtagctc
tcagctgacaattatttgtggctgttcttccagtcatgttctgcaattga
cgctgtgcccttactgtttcttaattttaattccacatttgctcaagaat
tgctttacttatttgctggctaagaataggagttttgtgctaaatctcca
gtcatttcactgtaagttttaatctaaatccacttgaggttgtcaatcac
tgtaacacgagaagtagtacagtgaagcctgaaatatggtcaacatctga
cttttccacccttctttgcatactagcaatgaacatcaatcatatactat
atttaaactgacatatgaaaattggtcattttgactgaaggctttatgat
tattcaaaactggcaagaaaaataacaatataagtgaaaagtcctacaac
agaaggattatgaaaatactctatcaagtcatcttagactaatcttccat
cctaattttttgcttctggtatagaaagttgggttttatgcaatctgaaa
agcagtcttggtgaatggaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84872707_84873535
seq2: B6Ng01-091K11.b_43_871

seq1  GAATTCTTGTCTAATGTCATAAAAATGTCACCTAGTGAATGGCAGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTAATGTCATAAAAATGTCACCTAGTGAATGGCAGAGGTG  50

seq1  AGGAGAGGTTGTTGCCACCACATCTTTAACTTCTAGCTGTGCTGTGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGTTGTTGCCACCACATCTTTAACTTCTAGCTGTGCTGTGCTGT  100

seq1  ACTCTGGGCATCTCCTTAGACCTCAATCTCTTTCTTTAATCCACTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGCATCTCCTTAGACCTCAATCTCTTTCTTTAATCCACTGCTTC  150

seq1  TATGTCATTCACTACTTATAGAAAGAGGTTATTTTGAATGTTTTTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATTCACTACTTATAGAAAGAGGTTATTTTGAATGTTTTTTTGTT  200

seq1  TGTTTTTGTGGGGTTTTTTTTGTTTTGTTTTCTGAAATTTTAGGATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTGGGGTTTTTTTTGTTTTGTTTTCTGAAATTTTAGGATATAT  250

seq1  ATCAAAGATCAGAAGCAAAGGGATGCAGGTAATACCCTGGGTCATTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGATCAGAAGCAAAGGGATGCAGGTAATACCCTGGGTCATTGCCA  300

seq1  AAAATATATGTGACTTTTCCCTTAGACACAAGCTTTCTTCAAATCTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATGTGACTTTTCCCTTAGACACAAGCTTTCTTCAAATCTTTCA  350

seq1  TATCTTAAAATAAGTAAACACAATCTCTTTGTGACTGTTAAACCTAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAAATAAGTAAACACAATCTCTTTGTGACTGTTAAACCTAACTA  400

seq1  GATAGACTCTTCTTTATTTGCATTTTTTACATGCAGACATCAAGTATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACTCTTCTTTATTTGCATTTTTTACATGCAGACATCAAGTATGAC  450

seq1  CCACACCATTTGTTGAAGAAACTGTCTTCTTTCAACAGTGCATTTCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCATTTGTTGAAGAAACTGTCTTCTTTCAACAGTGCATTTCTGGC  500

seq1  TTCTTTATTATAAGAAAGCCAAACTAAACAAAAGCAAGCAAGCAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTATAAGAAAGCCAAACTAAACAAAAGCAAGCAAGCAAACAAA  550

seq1  CAAACAAACAACCCAAACATTTGTAGATATGTGGATTTGTATCTGGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAACCCAAACATTTGTAGATATGTGGATTTGTATCTGGGTCT  600

seq1  TCAATTCTATTTTAGTGATAAATGTGAGTGTTTCTATGGCAAGACTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTATTTTAGTGATAAATGTGAGTGTTTCTATGGCAAGACTTTGT  650

seq1  GTATTTTATTACTATAGCTCTGTAGTTCAATATAAAATTGGGAATGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATTACTATAGCTCTGTAGTTCAATATAAAATTGGGAATGGCTA  700

seq1  AATATGCAAAAGTTGTTTTTATTATTCAGTACTGTTTAACTATCCTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAAAAGTTGTTTTTATTATTCAGTACTGTTTAACTATCCTGACA  750

seq1  TGTCTGCATGTGTGTGTGTGTTTAGTTG-TTTTTTGTTTATTTGTTGTTT  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTCTGCATGTGTGTGTGTGTTTAGTTGTTTTTTTGTTTATTTGTTGTTT  800

seq1  GTTTGTTTTCATTGAGTACT-ATCCTTTCAA  829
      ||||| | |||||||| ||| | ||||||||
seq2  GTTTG-TCTCATTGAG-ACTAACCCTTTCAA  829

seq1: chr5_85025094_85026232
seq2: B6Ng01-091K11.g_76_1197 (reverse)

seq1  GTTTCCA-TCAACCAGACTGCTTTTCAGATTTTGCTATTAAAAACCCAAC  49
      ||||||| ||| | |||||||||||||||  |||| ||  ||||||||||
seq2  GTTTCCATTCACCAAGACTGCTTTTCAGA--TTGC-AT--AAAACCCAAC  45

seq1  TCTCTATA-CAGAGAGCAAAAAAAATTAGGTATGG-AGAATAGTCTAAAG  97
      | |||||| |||| |||  ||||||||||| |||| ||| |||||| |||
seq2  TTTCTATACCAGA-AGC--AAAAAATTAGG-ATGGAAGATTAGTCT-AAG  90

seq1  ATGACTTGATAGAAGTTATTTTCATAATCCTTCTGTTTGTAGGACTTTTT  147
      |||||||||||||   ||||||||||||||||||| ||||||||| ||||
seq2  ATGACTTGATAGA--GTATTTTCATAATCCTTCTG-TTGTAGGAC-TTTT  136

seq1  CACTTAATATTTGTTTATTTTTCTTGCCAGTTTTTGAATAATCATAAAGC  197
      ||||| |||||   |||||||||||||||| |||||||||||||||||||
seq2  CACTT-ATATT--GTTATTTTTCTTGCCAG-TTTTGAATAATCATAAAGC  182

seq1  CTTCAGTCAAAATGACCAATTTTTCATATGTCAGTTTAAATATAGTATAT  247
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCAGTCAAAATGACCAA-TTTTCATATGTCAGTTTAAATATAGTATAT  231

seq1  GATTGATGGTTCAATTGCTAGTATGCAAAGAAGGGTGGAAAAGTCAGATG  297
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  GATTGAT-GTTC-ATTGCTAGTATGCAAAGAAGGGTGGAAAAGTCAGATG  279

seq1  TTGACCATATTTCAGGCTTCACTGTACTACTTCTCGTGTTACAGTGATTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCATATTTCAGGCTTCACTGTACTACTTCTCGTGTTACAGTGATTG  329

seq1  ACAACCTCAAGTGGATTTAGATTAAAACTTACAGTGAAATGACTGGAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTCAAGTGGATTTAGATTAAAACTTACAGTGAAATGACTGGAGAT  379

seq1  TTAGCACAAAACTCCTATTCTTAGCCAGCAAATAAGTAAAGCAATTCTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACAAAACTCCTATTCTTAGCCAGCAAATAAGTAAAGCAATTCTTG  429

seq1  AGCAAATGTGGAATT-AAATTAAGAAACAGTAAGGGCACAGCGTCAATTG  496
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTGGAATTAAAATTAAGAAACAGTAAGGGCACAGCGTCAATTG  479

seq1  CAGAACATGACTGGAAGAACAGCCACAAATAATTGTCAGCTGAGAGCTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATGACTGGAAGAACAGCCACAAATAATTGTCAGCTGAGAGCTAC  529

seq1  AGGAAAAAAAAAATCATTTGATCAGATTGTCCAGCTCTTAGAACTTCGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAAATCATTTGATCAGATTGTCCAGCTCTTAGAACTTCGTA  579

seq1  ATAAGATGGAAAGACTTACACATTAGTATAAATATTCAATTGAATTCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGGAAAGACTTACACATTAGTATAAATATTCAATTGAATTCTTT  629

seq1  CAGATTTCAAAAGGAAGTCACAAATTAAATTATTGATAACTTTGAAGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCAAAAGGAAGTCACAAATTAAATTATTGATAACTTTGAAGAAA  679

seq1  ATAAGAGTAAAACTTATTTTACAGTTTTATGCATTAGTGTGAATTTTTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTAAAACTTATTTTACAGTTTTATGCATTAGTGTGAATTTTTAT  729

seq1  AACAATTAAGTGAGATAATGAGTGTACACCAATCAACATACAACCATACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAAGTGAGATAATGAGTGTACACCAATCAACATACAACCATACA  779

seq1  AACATTCTCAGCCTTAACGTATAAGTGCTTATTCAATAGAGGTTACTTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTCAGCCTTAACGTATAAGTGCTTATTCAATAGAGGTTACTTTA  829

seq1  ATATTTTAGCAATTTGTAAATATGTAATTCATAACTAATGAATTCTTTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGCAATTTGTAAATATGTAATTCATAACTAATGAATTCTTTAT  879

seq1  AGCTTGTTTCTTAAATGCACAGAGTAAAGAAAGAATATTAAAAGCAGCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTTCTTAAATGCACAGAGTAAAGAAAGAATATTAAAAGCAGCAA  929

seq1  GGGAAAAAGACCAAGTAACAAATAAAAGTAGACCTATCATTCTAGACTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAGACCAAGTAACAAATAAAAGTAGACCTATCATTCTAGACTTT  979

seq1  TCAACAGAGACTACGAAAGTCAGAAGATCCTGGTCAAAGGTCATGCAGAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAGACTACGAAAGTCAGAAGATCCTGGTCAAAGGTCATGCAGAC  1029

seq1  TCTAAGAGAACACAAATGCCAGTCCAGGCTACTATACCCATCAAAACTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGAACACAAATGCCAGTCCAGGCTACTATACCCATCAAAACTTT  1079

seq1  CAATCAACATAGATGGAGAAACCAAAATATTCCAGGGCAAAAC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAACATAGATGGAGAAACCAAAATATTCCAGGGCAAAAC  1122