BAC Information

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BAC

Clone NameB6Ng01-091N03
Chromosome5 (Build37)
Map Location 143,619,215 - 143,717,661
singlet/doubletdoublet
Overlap geneFbxl18, D430018E03Rik, LOC100042558, Actb
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788
Downstream geneFscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091N03.bB6Ng01-091N03.g
ACCDH903746DH903747
length1,1301,026
definitionDH903746|Mus musculus domesticus DNA, BAC clone: B6Ng01-091N03, 5' end.DH903747|Mus musculus domesticus DNA, BAC clone: B6Ng01-091N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,619,215 - 143,620,347)(143,716,622 - 143,717,661)
sequence
gaattcactacgtcgtagaccaggttgcccttgaactcacaagaggtcca
cctgtttctgcctctgacacgctgaggttaaaagcctgcaccatcccatg
ctattcaagctctggacctgcagtgccagggtggagtggccaggagaaag
gttaggggtcagaaggagcagagggacacacggtgggagccttgagcctc
actcctcggatctctaggttcccagcctggtagaatgccatcccagatgt
acctggctggccaggacccagccttccctaatggggataggttccccctc
ccctgaaatggcagagcctctatctgagtgtgtcaccacatgcactgcca
gcttgctcgctgccaccagagcctcgctggaaagtcgcccgcaaattgaa
agagatttctttccagcagacagcgctctggcagattgaggctttatctt
gcccatgcagagggagcgagccctgctcatttcggttttcctacaattaa
aaacacccaaagctctaaatcacaaactggagaacaggtggggccttcag
ggttttctccgcagtttgataaagaggcgctggttgccagagcaacggag
cgaggcgcgttctggggagaggggccctagacgcctagtgtgttctgttg
gctctcgggaggaaaacagcttcccccggccttgctccacccagtaggtt
gttgctcatggtgtttgcggtccaagagaagagcctgagtgtgggaagac
ggtgaagccccgcttattcttaagagttttctcattttataataaatata
tgttcgttcgctaaaaaaaaaaaaaatgacagacaaaggtatggcggtgt
tgggaatctcagcgtctggaaagcagagacaggagggtctctgtgagttt
tagctagtcagggctacatagtgagtcctcagagagagagagcagagaca
gagacagacagacagacagatacagagagagagaggtcttttctgagcat
aagcatgtaatgcagcactaaagaagctgagcaggaagatcttgaagttc
aagtcagctgaagtcagctgggctacataacaagatcttgttcaaaagaa
acaaagtggaatagatttacagtttctcat
gaattctgcagttggctgagtctggtaaccattgagcttcggttgggagt
gggctgttatcattgtcgctgctgtgtctctgcccctgttgtaggcacac
ttaataaagagccgcacagagctccagcctgctctgtgtcacaccttccc
caagtgtcccctgagtcctcggagggatgagctacacctgtacacatcac
gaggtctcctcttcggccctgccccaggtccctgtggggaaagatgggga
catggacactgtgtccctggatcccctggggacccaagtgccacctgatc
cctgctgagatgagggtgcagcacaaaacagaacagttagcggaggtcag
gcctgagtcgctcctggctggatgccttgcctggcgcttgcaccagacag
gaaataaggccacaggataggctgccctgctccccaacttagttccctga
aggaggactcctggagtgtccccagaatctccatgatctccatgcagaac
agggacttccaaaggaaccagtagtgactccctgggctacacagttcacc
cacccatcccccatatcccaagattttttttttacttttttttttttttt
tgtaatggcatctgtgtagcccaggctagctccatagacttactatgttg
ctgaggatgcccttgaactcctgatcctcctgctgagatgtcagggatgc
gcaacagataacaagtctccactgcagcttgatgggcacccccttatccc
tccaacttttcagtctctcacctcttggctttcctggaaacctcatttac
acttctcaggaactcccagctgctgggaagagcaaggttgtgtcaacttt
gtactgctactatagcagaagacacagaaagcctggcctgagagctgtcc
caggaggatggctcagtaggctgttcacggttgcatgagatctgtctagc
ggcactcagttccctgctctcacagacatcgtgctaggcagctggagaga
ggcagagcagcaatttcagccaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143619215_143620347
seq2: B6Ng01-091N03.b_48_1177

seq1  GAATTCACTACGTCGTAGACCAGGTTGCCCTTGAACTCACAAGAGGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACGTCGTAGACCAGGTTGCCCTTGAACTCACAAGAGGTCCA  50

seq1  CCTGTTTCTGCCTCTGACACGCTGAGGTTAAAAGCCTGCACCATCCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTGCCTCTGACACGCTGAGGTTAAAAGCCTGCACCATCCCATG  100

seq1  CTATTCAAGCTCTGGACCTGCAGTGCCAGGGTGGAGTGGCCAGGAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAAGCTCTGGACCTGCAGTGCCAGGGTGGAGTGGCCAGGAGAAAG  150

seq1  GTTAGGGGTCAGAAGGAGCAGAGGGACACACGGTGGGAGCCTTGAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGGTCAGAAGGAGCAGAGGGACACACGGTGGGAGCCTTGAGCCTC  200

seq1  ACTCCTCGGATCTCTAGGTTCCCAGCCTGGTAGAATGCCATCCCAGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCGGATCTCTAGGTTCCCAGCCTGGTAGAATGCCATCCCAGATGT  250

seq1  ACCTGGCTGGCCAGGACCCAGCCTTCCCTAATGGGGATAGGTTCCCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTGGCCAGGACCCAGCCTTCCCTAATGGGGATAGGTTCCCCCTC  300

seq1  CCCTGAAATGGCAGAGCCTCTATCTGAGTGTGTCACCACATGCACTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAATGGCAGAGCCTCTATCTGAGTGTGTCACCACATGCACTGCCA  350

seq1  GCTTGCTCGCTGCCACCAGAGCCTCGCTGGAAAGTCGCCCGCAAATTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCGCTGCCACCAGAGCCTCGCTGGAAAGTCGCCCGCAAATTGAA  400

seq1  AGAGATTTCTTTCCAGCAGACAGCGCTCTGGCAGATTGAGGCTTTATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTCTTTCCAGCAGACAGCGCTCTGGCAGATTGAGGCTTTATCTT  450

seq1  GCCCATGCAGAGGGAGCGAGCCCTGCTCATTTCGGTTTTCCTACAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGCAGAGGGAGCGAGCCCTGCTCATTTCGGTTTTCCTACAATTAA  500

seq1  AAACACCCAAAGCTCTAAATCACAAACTGGAGAACAGGTGGGGCCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCAAAGCTCTAAATCACAAACTGGAGAACAGGTGGGGCCTTCAG  550

seq1  GGTTTTCTCCGCAGTTTGATAAAGAGGCGCTGGTTGCCAGAGCAACGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCCGCAGTTTGATAAAGAGGCGCTGGTTGCCAGAGCAACGGAG  600

seq1  CGAGGCGCGTTCTGGGGAGAGGGGCCCTAGACGCCTAGTGTGTTCTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCGCGTTCTGGGGAGAGGGGCCCTAGACGCCTAGTGTGTTCTGTTG  650

seq1  GCTCTCGGGAGGAAAACAGCTTCCCCCGGCCTTGCTCCACCCAGTAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCGGGAGGAAAACAGCTTCCCCCGGCCTTGCTCCACCCAGTAGGTT  700

seq1  GTTGCTCATGGTGTTTGCGGTCCAAGAGAAGAGCCTGAGTGTGGGAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCATGGTGTTTGCGGTCCAAGAGAAGAGCCTGAGTGTGGGAAGAC  750

seq1  GGTGAAGCCCCGCTTATTCTTAAGAGTTTTCTCATTTTATAATAAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGCCCCGCTTATTCTTAAGAGTTTTCTCATTTTATAATAAATATA  800

seq1  TGTTCGTTCGCT-AAAAAAAAAAAAATGACAGAC-AAGGTATGGCGGTGT  848
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TGTTCGTTCGCTAAAAAAAAAAAAAATGACAGACAAAGGTATGGCGGTGT  850

seq1  TGGGAATCTCAGCGTCTGGAAAGCAGAGACAGGAGGGTCTCTGTGAGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCTCAGCGTCTGGAAAGCAGAGACAGGAGGGTCTCTGTGAGTTT  900

seq1  TAGGCTAGTCAGGGCTACATAGTGAGTCCTCAGAGAGAGAGAGCAGAGAC  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-GCTAGTCAGGGCTACATAGTGAGTCCTCAGAGAGAGAGAGCAGAGAC  949

seq1  AGAGACAGACAGACAGACAGATACAGAGAGAGAGAGGTC-TTTCTGAGCA  997
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGACAGACAGACAGACAGATACAGAGAGAGAGAGGTCTTTTCTGAGCA  999

seq1  TAAGCATGTAATGCCAGCACTAAAGAAGCTGAGGCAGGAAGATC-TGAAG  1046
      ||||||||||||| |||||||||||||||||| ||||||||||| |||||
seq2  TAAGCATGTAATG-CAGCACTAAAGAAGCTGA-GCAGGAAGATCTTGAAG  1047

seq1  TTCAAGGTCAGCCTGAAGGTCAGCCTGGGCTACATAACAAGATCCTGTCA  1096
      ||||| ||||| ||||| ||||| |||||||||||||||||||| |||  
seq2  TTCAA-GTCAG-CTGAA-GTCAG-CTGGGCTACATAACAAGATCTTGTTC  1093

seq1  CAAAGAAACAAAAGTGGAATAGATTTACAG-TTCTCAT  1133
       |||||||| |||||||||||||||||||| |||||||
seq2  AAAAGAAAC-AAAGTGGAATAGATTTACAGTTTCTCAT  1130

seq1: chr5_143716622_143717661
seq2: B6Ng01-091N03.g_67_1092 (reverse)

seq1  TTGGTGGCTGGAAATTTGCCTGCTTCTGCCTCTCTCCAGCTGCCTAGCAC  50
      ||||||||| ||||||   |||| ||||||||||||||||||||||||||
seq2  TTGGTGGCT-GAAATT--GCTGC-TCTGCCTCTCTCCAGCTGCCTAGCAC  46

seq1  TGATGTCTGGTTGAGAGCAGGGGAAACTGAGGTGCCGCTAGGACAAGATC  100
       ||||||||  |||||||||||  |||||| ||||||||| ||| |||||
seq2  -GATGTCTG--TGAGAGCAGGG--AACTGA-GTGCCGCTA-GAC-AGATC  88

seq1  TCATGCAACCGTGAACAGCCCTACTGAGCCATCCTCCTGGGACAGCCTCT  150
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TCATGCAACCGTGAACAG-CCTACTGAGCCATCCTCCTGGGACAG-CTCT  136

seq1  CAGGCCAGGCCTTCTGTGTCTTCTGCTATAGTAGCAGTACAAAGTTGACA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGGCTTTCTGTGTCTTCTGCTATAGTAGCAGTACAAAGTTGACA  186

seq1  CAACCTTGCTCTTCCCAGCAGCTGGGAGTTCCTGAGAAGTGTAAATGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGCTCTTCCCAGCAGCTGGGAGTTCCTGAGAAGTGTAAATGAGG  236

seq1  TTTCCAGGAAAGCCAAGAGGTGAGAGACTGAAAAGTTGGAGGGATAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGAAAGCCAAGAGGTGAGAGACTGAAAAGTTGGAGGGATAAGGG  286

seq1  GGTGCCCATCAAGCTGCAGTGGAGACTTGTTATCTGTTGCGCATCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCATCAAGCTGCAGTGGAGACTTGTTATCTGTTGCGCATCCCTGA  336

seq1  CATCTCAGCAGGAGGATCAGGAGTTCAAGGGCATCCTCAGCAACATAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGCAGGAGGATCAGGAGTTCAAGGGCATCCTCAGCAACATAGTA  386

seq1  AGTCTATGGAGCTAGCCTGGGCTACACAGATGCCATTACAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGGAGCTAGCCTGGGCTACACAGATGCCATTACAAAAAAAAAAA  436

seq1  AAAAAGTAAAAAAAAAATCTTGGGATATGGGGGATGGGTGGGTGAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAAAAAAAAATCTTGGGATATGGGGGATGGGTGGGTGAACTGT  486

seq1  GTAGCCCAGGGAGTCACTACTGGTTCCTTTGGAAGTCCCTGTTCTGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCAGGGAGTCACTACTGGTTCCTTTGGAAGTCCCTGTTCTGCATG  536

seq1  GAGATCATGGAGATTCTGGGGACACTCCAGGAGTCCTCCTTCAGGGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATGGAGATTCTGGGGACACTCCAGGAGTCCTCCTTCAGGGAACT  586

seq1  AAGTTGGGGAGCAGGGCAGCCTATCCTGTGGCCTTATTTCCTGTCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGGAGCAGGGCAGCCTATCCTGTGGCCTTATTTCCTGTCTGGTG  636

seq1  CAAGCGCCAGGCAAGGCATCCAGCCAGGAGCGACTCAGGCCTGACCTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGCCAGGCAAGGCATCCAGCCAGGAGCGACTCAGGCCTGACCTCCG  686

seq1  CTAACTGTTCTGTTTTGTGCTGCACCCTCATCTCAGCAGGGATCAGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTTCTGTTTTGTGCTGCACCCTCATCTCAGCAGGGATCAGGTGG  736

seq1  CACTTGGGTCCCCAGGGGATCCAGGGACACAGTGTCCATGTCCCCATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGTCCCCAGGGGATCCAGGGACACAGTGTCCATGTCCCCATCTT  786

seq1  TCCCCACAGGGACCTGGGGCAGGGCCGAAGAGGAGACCTCGTGATGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAGGGACCTGGGGCAGGGCCGAAGAGGAGACCTCGTGATGTGTA  836

seq1  CAGGTGTAGCTCATCCCTCCGAGGACTCAGGGGACACTTGGGGAAGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTAGCTCATCCCTCCGAGGACTCAGGGGACACTTGGGGAAGGTGT  886

seq1  GACACAGAGCAGGCTGGAGCTCTGTGCGGCTCTTTATTAAGTGTGCCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGCAGGCTGGAGCTCTGTGCGGCTCTTTATTAAGTGTGCCTAC  936

seq1  AACAGGGGCAGAGACACAGCAGCGACAATGATAACAGCCCACTCCCAACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGCAGAGACACAGCAGCGACAATGATAACAGCCCACTCCCAACC  986

seq1  GAAGCTCAATGGTTACCAGACTCAGCCAACTGCAGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAATGGTTACCAGACTCAGCCAACTGCAGAATTC  1026