BAC Information

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BAC

Clone NameB6Ng01-091N09
Chromosome5 (Build37)
Map Location 12,006,811 - 12,151,690
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091N09.bB6Ng01-091N09.g
ACCDH903758DH903759
length9621,123
definitionDH903758|Mus musculus domesticus DNA, BAC clone: B6Ng01-091N09, 5' end.DH903759|Mus musculus domesticus DNA, BAC clone: B6Ng01-091N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,006,811 - 12,007,561)(12,150,559 - 12,151,690)
sequence
gaattccaagtaaggagagtattcaacaaagcttgagtcacttagattag
catgttacagccccctctcccaaatctctactagcatgtatgtcactgat
ttactagaattgtgaatatttattccttttctagtagaactgttttcttt
tgttttgttttgtttattttgtttttcacaaaacaggattcttgaattta
tcaatctaaattggctaaacaatgcagtacactaaactatgaaaaagggg
aggggatttttcccctgtgtccatatcgtcaaggcttttccccactttct
cctctataagtttcagtgtctctggttttatgtgaagttccttgatcaac
ttagatttgacattagtacaaggaaataggtgtggatcgacccgcattct
tctacatgataacaaccagttgtgccagcaccatttgttgaaaatgctgt
ctttcttccaccggatggttttagctcccttgtcgaagatcaagtgatca
taggtgtgtgggttcatttctgggtcttcaattctattccattggtctac
ttgtctgtcagtataccagtaccatgcagtttttatcacagttgctctgt
agtaaagctttaggtcaggcatggtgattccaccagaggttcttttatcc
ttgagaagagtttttgctatcctaggttttttgttattccagatgaattt
gcagattgctctttctaattcgttgaagaattgagttgaaattttgatgg
ggattgcattgaatctgtagattgcttttggcaagataaccatttttaca
atgttgatcctgccaatccatgagcatgggagatctttccatcttctgag
atcttctttaatttctttcttcagagacttgaagttttaaaaatgggcct
cagaactgaacaaagaattctcactgaggaataccgaatagcagagaagc
acctgaaaaaat
gaattccttcatatataatttttcaagaaatattaatgagaaagaagagg
aaagggacccttgaaattcatgattggaatctagaaaagttgttattaca
aaatatgagatctcctagaaaatgaaaaatttatcctattatgttggtga
aactttagttgtagcttccaatgttactagaggacataatctcacagcat
acttcctgatctggcttttaacaatctttgtgcccctttttctgcactgt
tccttgagccttgtgagtgagacatttttttttaatgtcaaaaatagaga
gaataattaaaaataaaagagtgaattcctatatggtccagaaattctat
gaatatatatccagaggaaatgtaaatgtatttacaaacatcttctgtat
gcccagattcagcacagcactgctcataacagctaaaagttagaatcatc
aagcatccatcactgattaatgagaaaagataaaaggacaagatgcataa
tagaataacgttaagtcataaaacataaagaaagggggtcattgtgtcaa
agtattttggactgaatatcactaaatcaagtgaaatagttcaggaacaa
aaaggtatgacttgattcatgtgtggaatgataaaacatctcacagagag
ttgagtgacaattcagaggccagggagagccgatttacaagagggaggtg
ttgagcggtgggtatggttatcattatgtaggaacaagaattttctttgt
acggctgcattgcccagtgactgaagatggcatctctataatgtacattt
caaacagttgaagaaagggcgttgagctctcactacaaaaaaaatagtaa
ctgtttgaggagatagatattctcaatctggcaaacatttgcagtgaata
gttatgacataaaccattaatgtgacattggatgttttgtgtatctgtca
gtctgaagacaattgaaatatatttaaaatttttataacaaagtaatatt
agtgaaattttatttttgtatctaaaacgtcttacaaatcagttgatgtg
acttgtgacctctccaggaaagcttgcctggtggcacctatacctgtact
gtatgactggaaagctgcctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12006811_12007561
seq2: B6Ng01-091N09.b_46_796

seq1  GAATTCCAAGTAAGGAGAGTATTCAACAAAGCTTGAGTCACTTAGATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTAAGGAGAGTATTCAACAAAGCTTGAGTCACTTAGATTAG  50

seq1  CATGTTACAGCCCCCTCTCCCAAATCTCTACTAGCATGTATGTCACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACAGCCCCCTCTCCCAAATCTCTACTAGCATGTATGTCACTGAT  100

seq1  TTACTAGAATTGTGAATATTTATTCCTTTTCTAGTAGAACTGTTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAATTGTGAATATTTATTCCTTTTCTAGTAGAACTGTTTTCTTT  150

seq1  TGTTTTGTTTTGTTTATTTTGTTTTTCACAAAACAGGATTCTTGAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTATTTTGTTTTTCACAAAACAGGATTCTTGAATTTA  200

seq1  TCAATCTAAATTGGCTAAACAATGCAGTACACTAAACTATGAAAAAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTAAATTGGCTAAACAATGCAGTACACTAAACTATGAAAAAGGGG  250

seq1  AGGGGATTTTTCCCCTGTGTCCATATCGTCAAGGCTTTTCCCCACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTTTTCCCCTGTGTCCATATCGTCAAGGCTTTTCCCCACTTTCT  300

seq1  CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCAAC  350

seq1  TTAGATTTGACATTAGTACAAGGAAATAGGTGTGGATCGACCCGCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTGACATTAGTACAAGGAAATAGGTGTGGATCGACCCGCATTCT  400

seq1  TCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT  450

seq1  CTTTCTTCCACCGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCACCGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGATCA  500

seq1  TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC  550

seq1  TTGTCTGTCAGTATACCAGTACCATGCAGTTTTTATCACAGTTGCTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTCAGTATACCAGTACCATGCAGTTTTTATCACAGTTGCTCTGT  600

seq1  AGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCC  650

seq1  TTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTT  700

seq1  GCAGATTGCTCTTTCTAATTCGTTGAAGAATTGAGTTGAAATTTTGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTGCTCTTTCTAATTCGTTGAAGAATTGAGTTGAAATTTTGATGG  750

seq1  G  751
      |
seq2  G  751

seq1: chr5_12150559_12151690
seq2: B6Ng01-091N09.g_68_1190 (reverse)

seq1  CACAGGCAAGCTTTCCAGTCACTAACAGTACA-GTATAGCTGCCA-CAGG  48
      ||||||| |||||||||||||   |||||||| |||||| ||||| ||||
seq2  CACAGGC-AGCTTTCCAGTCA--TACAGTACAGGTATAGGTGCCACCAGG  47

seq1  CAAGCTTTCCT-GAGAGTTCACAAGTCAACATCAACTGATTTGTAAGACG  97
      ||||||||||| ||||| ||||||||| ||||||||||||||||||||||
seq2  CAAGCTTTCCTGGAGAGGTCACAAGTC-ACATCAACTGATTTGTAAGACG  96

seq1  TTTTAAGATACAAAAATTAAAATTTCACTAATATTACTTTTGTTATAAAA  147
      |||| ||||||||||| |||||||||||||||||||| ||||||||||| 
seq2  TTTT-AGATACAAAAA-TAAAATTTCACTAATATTAC-TTTGTTATAAA-  142

seq1  TAATTTTAAATATATTTCAATTGTCTTCAGAACTGACAGATACACAAAAC  197
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  -AATTTTAAATATATTTCAATTGTCTTCAG-ACTGACAGATACACAAAAC  190

seq1  ATCCAATGTTCACATTAATGGTTTATGTCATAACTATTCACTGCAAAATG  247
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  ATCCAATG-TCACATTAATGGTTTATGTCATAACTATTCACTGC-AAATG  238

seq1  TTTGCCAGATTGAGAATATCTATCTCCTCAAACAGTTACTATTTTTTTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGATTGAGAATATCTATCTCCTCAAACAGTTACTATTTTTTTTG  288

seq1  TAGTGAGAGCTCAACGCCCTTTCTTCAACTGTTTGAAATGTACATTATAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGAGCTCAACGCCCTTTCTTCAACTGTTTGAAATGTACATTATAG  338

seq1  AGATGCCATCTTCAGTCACTGGGCAATGCAGCCGTACAAAGAAAATTCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCATCTTCAGTCACTGGGCAATGCAGCCGTACAAAGAAAATTCTT  388

seq1  GTTCCTACATAATGATAACCATACCCACCGCTCAACACCTCCCTCTTGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTACATAATGATAACCATACCCACCGCTCAACACCTCCCTCTTGTA  438

seq1  AATCGGCTCTCCCTGGCCTCTGAATTGTCACTCAACTCTCTGTGAGATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGCTCTCCCTGGCCTCTGAATTGTCACTCAACTCTCTGTGAGATGT  488

seq1  TTTATCATTCCACACATGAATCAAGTCATACCTTTTTGTTCCTGAACTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTCCACACATGAATCAAGTCATACCTTTTTGTTCCTGAACTAT  538

seq1  TTCACTTGATTTAGTGATATTCAGTCCAAAATACTTTGACACAATGACCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGATTTAGTGATATTCAGTCCAAAATACTTTGACACAATGACCC  588

seq1  CCTTTCTTTATGTTTTATGACTTAACGTTATTCTATTATGCATCTTGTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTATGTTTTATGACTTAACGTTATTCTATTATGCATCTTGTCC  638

seq1  TTTTATCTTTTCTCATTAATCAGTGATGGATGCTTGATGATTCTAACTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTTTCTCATTAATCAGTGATGGATGCTTGATGATTCTAACTTT  688

seq1  TAGCTGTTATGAGCAGTGCTGTGCTGAATCTGGGCATACAGAAGATGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTATGAGCAGTGCTGTGCTGAATCTGGGCATACAGAAGATGTTT  738

seq1  GTAAATACATTTACATTTCCTCTGGATATATATTCATAGAATTTCTGGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACATTTACATTTCCTCTGGATATATATTCATAGAATTTCTGGAC  788

seq1  CATATAGGAATTCACTCTTTTATTTTTAATTATTCTCTCTATTTTTGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGGAATTCACTCTTTTATTTTTAATTATTCTCTCTATTTTTGACA  838

seq1  TTAAAAAAAAATGTCTCACTCACAAGGCTCAAGGAACAGTGCAGAAAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAATGTCTCACTCACAAGGCTCAAGGAACAGTGCAGAAAAAG  888

seq1  GGGCACAAAGATTGTTAAAAGCCAGATCAGGAAGTATGCTGTGAGATTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAAAGATTGTTAAAAGCCAGATCAGGAAGTATGCTGTGAGATTAT  938

seq1  GTCCTCTAGTAACATTGGAAGCTACAACTAAAGTTTCACCAACATAATAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTAGTAACATTGGAAGCTACAACTAAAGTTTCACCAACATAATAG  988

seq1  GATAAATTTTTCATTTTCTAGGAGATCTCATATTTTGTAATAACAACTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTTTTCATTTTCTAGGAGATCTCATATTTTGTAATAACAACTTT  1038

seq1  TCTAGATTCCAATCATGAATTTCAAGGGTCCCTTTCCTCTTCTTTCTCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTCCAATCATGAATTTCAAGGGTCCCTTTCCTCTTCTTTCTCAT  1088

seq1  TAATATTTCTTGAAAAATTATATATGAAGGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  TAATATTTCTTGAAAAATTATATATGAAGGAATTC  1123