BAC Information

Click to search

BAC

Clone NameB6Ng01-092G11
Chromosome5 (Build37)
Map Location 69,112,568 - 69,224,891
singlet/doubletdoublet
Overlap genenone
Upstream geneAtp8a1, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092G11.bB6Ng01-092G11.g
ACCDH904174DH904175
length807327
definitionDH904174|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G11, 5' end.DH904175|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,112,568 - 69,113,326)(69,224,565 - 69,224,891)
sequence
gaattctcagcgacttctgtcctttggttttttttcgggccattatgatt
ctgaactgttccagtatccttgtgggaacaatatctcctattgatgttac
aatgcaccctccaaattaaaaagcatgagttataaaccaccctacacttg
atcaattttcccttgtctactgaaccgtaatgatgaaagttttctcaatg
cttgaaaattcatttttaattcaatttttgaggtttgatcttgtgtgcca
tgtatctctaatgacgaacggctgatttgttctttctgagagggccaaca
gaatactttatttatgacctgatctttgtgaaaatttctctgctgcttcc
tccctgaatgcctcctacccttgcccttgaggctgaaacacttcagcaca
tttttcttctgacagtcactaatgaagcattcacttgtatttgtcatctg
attattctccaacaacttaggaagaacttccttttttggcatgttaataa
aatcatccagtaaaataaatattctgctatccagtgaatctgaattacct
tggatgcaacacatatttcaacatgattataaaaatagagtttcagaatc
tagaaaacatctttttccgtgtaggtgcgaaattaaactgcatgggtatg
gccagccttgggaaattgcactgggaatgaaagctggtcatgccactctc
accccaacctagaattcccatacttgtctctctgacctgaggaaacatag
aatccctgaagtcgccttcaagtccatagtactcgtaactgaataaaaac
ttctcac
aaatcaatgagcctatgtggcccattctcattcaaaccaccacaaacatc
ttcagatatgaatatataatcttgagtaacttctaaaacaaagagggcaa
taaatgcccactgggcataggatcaatagagagatctgtagaaggtgtgt
gaaaattgattgggggatagaaaatggagggggctttaattagggaagca
tgagggagataaatacaaaaggagaaataagtctaaaataacaacaagga
tgtctgagaaagtgacaatgaatgaaagtattacttattttcctaaaatt
acatataatgcatatgagtttatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69112568_69113326
seq2: B6Ng01-092G11.b_70_817

seq1  TTTTCCGGGCCAATAAATGATTCTGAACTGTTCCAGTAATATGGTGGAAA  50
      |||| ||||||| |  ||||||||||||||||||||||   | |||| ||
seq2  TTTTTCGGGCCATT--ATGATTCTGAACTGTTCCAGTATCCTTGTGGGAA  48

seq1  CAAATATCTCCTATTGATGTTTAAATGCAAACAACAAATTAAAATGCATG  100
      | |||||||||||||||||||  ||||||  |  |||||||||| |||||
seq2  C-AATATCTCCTATTGATGTTACAATGCACCCTCCAAATTAAAAAGCATG  97

seq1  ATATATAAGCCATAAAACACTTGAGCAATTTTCCATTGTCTTATGAAGCA  150
      |  ||||| |||    |||||||| ||||||||| ||||||  |||| | 
seq2  AGTTATAAACCACCCTACACTTGATCAATTTTCCCTTGTCTACTGAACCG  147

seq1  TAATGATTAATGTTTTCTAAATGCTTTAAAATTAATTTTTAATTCAATTT  200
      ||||||| || ||||||| ||||||| |||||| ||||||||||||||||
seq2  TAATGATGAAAGTTTTCTCAATGCTTGAAAATTCATTTTTAATTCAATTT  197

seq1  TTGAGGTATTGATCTTGTGTTCCATGTATCTCTAATAACGAATGTAGCAT  250
      ||||||| |||||||||||| ||||||||||||||| ||||| |    ||
seq2  TTGAGGT-TTGATCTTGTGTGCCATGTATCTCTAATGACGAACGGCTGAT  246

seq1  TTGTTATTTCTGAGAGGGCCAACAACATACTTTATTTATGAGCTGATCTT  300
      ||||| ||||||||||||||||||  ||||||||||||||| ||||||||
seq2  TTGTTCTTTCTGAGAGGGCCAACAGAATACTTTATTTATGACCTGATCTT  296

seq1  TGTGAAAATTTCTCTACTGCTTCCTCCCTGAATGCCTCCTACCCTTGCCC  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATTTCTCTGCTGCTTCCTCCCTGAATGCCTCCTACCCTTGCCC  346

seq1  TTATAGGCTGAAACACTTCAAGCACATTTTTCTTAAGTCCAGTCACTAAT  400
      ||  ||||||||||||||| ||||||||||||||  |  |||||||||||
seq2  TT-GAGGCTGAAACACTTC-AGCACATTTTTCTTCTG-ACAGTCACTAAT  393

seq1  GAAGCATTCACTTGTATTTGTCATCTAGTTATTCTCCAACAACTTAGGAA  450
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GAAGCATTCACTTGTATTTGTCATCTGATTATTCTCCAACAACTTAGGAA  443

seq1  GAACTTCCTTTTTTGGCATGTTAATAAAATCATCCAGTAATATAAATATT  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAACTTCCTTTTTTGGCATGTTAATAAAATCATCCAGTAAAATAAATATT  493

seq1  CTGCTATCCAGTGAATCTGAATTACCTTACAGGCAACACATATTTCAACA  550
      ||||||||||||||||||||||||||||  | ||||||||||||||||||
seq2  CTGCTATCCAGTGAATCTGAATTACCTTGGATGCAACACATATTTCAACA  543

seq1  TGTTTATAAAAATAGAGTTTCAGAATCTAGAAAAGATCTTTTTCCGTGTA  600
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGATTATAAAAATAGAGTTTCAGAATCTAGAAAACATCTTTTTCCGTGTA  593

seq1  GGTGCCTAATTAGCCTGCATGGGTATGGCCAGCCTTGGGAAATTGCACTG  650
      |||||  |||||  ||||||||||||||||||||||||||||||||||||
seq2  GGTGCGAAATTAAACTGCATGGGTATGGCCAGCCTTGGGAAATTGCACTG  643

seq1  GGAAATGAAAGCTGGTCATGCCACTCTGACCCCAACCAAGAATTTCCATA  700
      || |||||||||||||||||||||||| ||||||||| |||||| |||||
seq2  GG-AATGAAAGCTGGTCATGCCACTCTCACCCCAACCTAGAATTCCCATA  692

seq1  CTTGTCTCTCTGACCTGAGGTTAAAAATAGAATCCACTGAAATCACCTCA  750
      ||||||||||||||||||||  ||| ||||||||| ||||| || |||  
seq2  CTTGTCTCTCTGACCTGAGG--AAACATAGAATCC-CTGAAGTCGCCTTC  739

seq1  AAGTCCATA  759
      |||||||||
seq2  AAGTCCATA  748

seq1: chr5_69224565_69224891
seq2: B6Ng01-092G11.g_75_401 (reverse)

seq1  ATATATAAACTCATATGCATTATATGTAATTTTAGGAAAATAAGTAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAACTCATATGCATTATATGTAATTTTAGGAAAATAAGTAATAC  50

seq1  TTTCATTCATTGTCACTTTCTCAGACATCCTTGTTGTTATTTTAGACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCATTGTCACTTTCTCAGACATCCTTGTTGTTATTTTAGACTTA  100

seq1  TTTCTCCTTTTGTATTTATCTCCCTCATGCTTCCCTAATTAAAGCCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTTGTATTTATCTCCCTCATGCTTCCCTAATTAAAGCCCCCT  150

seq1  CCATTTTCTATCCCCCAATCAATTTTCACACACCTTCTACAGATCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTATCCCCCAATCAATTTTCACACACCTTCTACAGATCTCTCT  200

seq1  ATTGATCCTATGCCCAGTGGGCATTTATTGCCCTCTTTGTTTTAGAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCTATGCCCAGTGGGCATTTATTGCCCTCTTTGTTTTAGAAGTT  250

seq1  ACTCAAGATTATATATTCATATCTGAAGATGTTTGTGGTGGTTTGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGATTATATATTCATATCTGAAGATGTTTGTGGTGGTTTGAATGA  300

seq1  GAATGGGCCACATAGGCTCATAGATTT  327
      ||||||||||||||||||||| |||||
seq2  GAATGGGCCACATAGGCTCATTGATTT  327