BAC Information

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BAC

Clone NameB6Ng01-092I20
Chromosome5 (Build37)
Map Location 51,610,123 - 51,610,684
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092I20.bB6Ng01-092I20.g
ACCDH904286DH904287
length1,248776
definitionDH904286|Mus musculus domesticus DNA, BAC clone: B6Ng01-092I20, 5' end.DH904287|Mus musculus domesticus DNA, BAC clone: B6Ng01-092I20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaagggaaaaaaatatgtttataaccacgtaattattcggtg
tattgtcagctcacacatgaaatacatcaggaacagacagatactagaag
tatagaatatagccacatattagaagtaatttcacttctggtcttagcca
gtaccctgagcagaccttgggtgctagctctgcacccaatcccacaacac
ccagaggaagctggactcctaggagctctgaaatgccaaggatcataggt
gaggtggtcacatctgccccatcatggggagtatctgggacccctgggga
gccagagacacaggaacccctacccttccagtggcacgggttccttccat
tctgagccagtgccctgagcaatcattgggctctagatccacaccaagtc
cctcaacaccctgaggaagctggactcccaggtgctctaacatgcccagg
atcataggatcataggatgagaggatctcaggagcttggtacagcaagat
ttcagaatcccagtggcagcttgatttccaggagctcttacacccaggat
ctcagaatcacaggaccaaagagacagctggactctgaggagttctcaca
caaccaagataacaggagggcagtctccagtcagagacagtgagtacagt
tagcactagagataactagatggcaagaggcaagcacaagtacataatca
acagaaacctaggttacttgacatcaggagaactcagttctcccaccata
gcaagtcctggataccccataacaccataaacgcaagattcacgtttaaa
atcacttcttgtggtgagacagataattttaagaaggtcataaataactc
ccttaaaaaaaatacaggagaacaggtaaacaggtagaagcccttaagag
gaaacacaaaaatcccttaagaattacaagaaacacaaccaaacaagtga
aagaattcaacaaatcatccaggatctaaaaatggagtagaaacaataag
aaacaaaagcagactatctagagaaagaaaacctagaagagatcaggagc
ataactacagagtacgagaatagagagagattctccagtgcagaagatac
cataagaaaaacatgatagtatcatcaagaaattgcaattcaaaaaggct
tcttacttaacttcgggaatctatgaccattggaagaccaccatgcttgg
ttaagagcactcaattaaggcactgtagattctctctttacacaaaat
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaaac
atccctgtatccctggaataaaacttacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagtgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatcttttttgggt
ctttttgtggtttaggtatcagagtaattgtggcttcataaaatgtgttg
tgtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagtactctgcactaaacctgtctg
gtcctgggctttttttttttttggctgggagactattaataactgcttct
atttctttaggggatatgggactgtttagatcattaacttgatcctaatt
taaatttggtacctggtatctgtccagaaatttgtccatttcatccaggt
tttccagttttgttgagtatagccttttgtagaaggatttgatggtgttt
tggattttcttcggatctgttgttatgtctcccttttcattttctgattt
tgttaattaggattttgtccctgtgccctctagtgagtctagctaagggt
tatctatctttttgattttctcaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51610123_51610684
seq2: B6Ng01-092I20.g_278_845 (reverse)

seq1  CTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAG  50
      ||||||||||||||| ||||||||| ||||||||||||||||||||| ||
seq2  CTTTGAGAAAATCAAAAAGATAGAT-AACCCTTAGCTAGACTCACTAGAG  49

seq1  GGCACAGGGACAAAATCCTAATTAACAAAATCAG-AAATGAAAAGGGAGA  99
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCACAGGGACAAAATCCTAATTAACAAAATCAGAAAATGAAAAGGGAGA  99

seq1  CATAACAACAGATCCTGAAG-AAATCCAAAACACCATCAGATCCTTCTAC  148
      ||||||||||||||| |||| |||||||||||||||||| ||||||||||
seq2  CATAACAACAGATCC-GAAGAAAATCCAAAACACCATCAAATCCTTCTAC  148

seq1  AAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATT  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATT  198

seq1  TCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATC  248
      |||||||||||||||||||||||| || ||| ||||||||||| |  |||
seq2  TCTGGACAGATACCAGGTACCAAATTTAAATTAGGATCAAGTTAATGATC  248

seq1  TAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  298

seq1  CCAGCC------AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTT  342
      ||||||      ||||||||||||||||||||| ||||||||||||||| 
seq2  CCAGCCAAAAAAAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTA  348

seq1  CTATCAGACCTTCAAAGAAAATCTAATTCCAGTTCTGCACAAACTATTTC  392
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTC  398

seq1  ACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACT  442
      ||||||||||||||||||||||||||| |||| |||||||||||||||| 
seq2  ACAAAATAGAAGTAGAAGGTACTCTACACAACACATTTTATGAAGCCACA  448

seq1  ATTACTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTT  492
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  ATTACTCTGATACCTAAACCACAAAAAGACCCAAAAAAGATAGAGAACTT  498

seq1  CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTC  548

seq1  TCGCTAACCGAATCCAAGAA  562
      || |||||||||||||||||
seq2  TCACTAACCGAATCCAAGAA  568