BAC Information

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BAC

Clone NameB6Ng01-092L12
Chromosome5 (Build37)
Map Location 93,145,002 - 93,304,471
singlet/doubletdoublet
Overlap geneShroom3
Upstream geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik
Downstream geneLOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092L12.bB6Ng01-092L12.g
ACCDH904401DH904402
length1,191299
definitionDH904401|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L12, 5' end.DH904402|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,303,262 - 93,304,471)(93,145,002 - 93,145,300)
sequence
gaattcagttgaatctacaccttcttgagaacccgagcaggaaacccagc
tgaatcctgtgtgatttctagcctagagttgtgagtgcttacacatatgt
tgctttcagatgctgccctgtctgtggtagaattctccgtaataaaaaac
gagtacaactgccaacagttgggaagggtatgggaaaatggaagctggac
tgtaagatgatgtaagctcttcacacaatggacagaagtttcttattatc
aaatacacatctttcctatgggtcctcgtttcaagagaaatgaaaatatg
tgtcaataaaatacttgctcactaaggctcacagcagttttattcataat
tgcccaagacgggacacaggtcatatgaccatcaacagcaattaaaaaca
atgaactatgaacacaaatatgaatgaagttcaaaattaatgatgagtga
aaaatatcgaagacggtattgtatgaacaatgctctagagagattgacag
ctggtgtggctgggatgtatccactaagactgcacacatggcggcacata
cctacactcccagaacttggaggaggaagaggagcgggaagaaggagctg
ctgttctagactaagtaaaaacatttctagagagaaatgaacaggaacaa
cagacgcctcagggcccccatctggggtgatgaaaccagtcttcatcttg
tcagtgatccagttacataggtgggtatattcattgtcagcagtaaggta
cacacatttcagtttgtgagttatctgtcaataaaaattgttttaaataa
attggaaagggagcccaactccatatgtttatagcctctcacatggaaag
catacacttacggctagcccagaattctcctctcacactgggaatccttt
ctcacaccataagaagcttcccaattcttaggattcactgggtttctgct
ccagtgtttatataagatactaaacacagccaggactgccggttaaactc
ttttttattgaacacagtagtttctgggtttgtttgttgctgctttgttt
ccaaaaagggttctctatgtaggtctgggctgttctgactctaattggag
acaagctggtcagaactcacaagaccacttgcctttgcctctgcctccct
agtgcaggataaggcggtgccacgccattcgcttcatggta
ctgtgaaagagaaagaggagagcaggaaaacatgcctgaggctggagatg
tgggttcagaggttaacagcactggctgctcttccacagggctgaagttt
tgtttgcctgtctggggcagcgccccatgaactgtagctcttgctcaagg
ggctctgatgccctcctcaggcttctgtaggcacctgtacacacatgcat
tggcataccctgatgcattgggacacatacacacacatgcgaggagagag
agagagagagagagagagagagagagagagagagagagagagagagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93303262_93304471
seq2: B6Ng01-092L12.b_48_1238 (reverse)

seq1  TACCATGAAGCCAGATGGCGGTGGCACACGCCTTTAATCCCTGCACTGGG  50
      ||||||||||| | ||||| ||||||| ||||||  || |||||||| ||
seq2  TACCATGAAGCGA-ATGGC-GTGGCAC-CGCCTT--AT-CCTGCACTAGG  44

seq1  GAGGCAGAGGCAGAGGCAGGTGGGTCTCTGTGAGTTTCTGGCCAGCTTGG  100
      |||||||||||| ||||| || ||||| |||||| ||||| ||||||| |
seq2  GAGGCAGAGGCAAAGGCAAGT-GGTCT-TGTGAG-TTCTGACCAGCTT-G  90

seq1  TCTCCAAATAGAGTTCCAGGACAG-CCAGGACTACATAGAGAAACCCTGT  149
      ||||||| ||||||  ||| |||| ||||  |||||||||| |||||| |
seq2  TCTCCAATTAGAGT--CAGAACAGCCCAGACCTACATAGAG-AACCCT-T  136

seq1  CTTGGAAAACCAAAGCAAGCAAACAAACAAAACCCAGAAACTACTGTGTT  199
       |||||||  |||||| ||| ||||||| |||||||||||||||||||||
seq2  TTTGGAAA--CAAAGC-AGC-AACAAAC-AAACCCAGAAACTACTGTGTT  181

seq1  CAAT-AAATAGAGTTTAACCGGCAGTTCTTGGCTGTGTTTAGTATCCTTA  248
      |||| ||| |||||||||||||||| || |||||||||||||||| ||||
seq2  CAATAAAAAAGAGTTTAACCGGCAG-TCCTGGCTGTGTTTAGTAT-CTTA  229

seq1  TATAAACACTGGAGCAGAAACCCAGTGAATCCTAAGAATTGGGAAGCTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACACTGGAGCAGAAACCCAGTGAATCCTAAGAATTGGGAAGCTTC  279

seq1  TTATGGTGTGAGAAAGGATTCCCAGTGTGAGAGGAGAATTCTGGGCTAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTGTGAGAAAGGATTCCCAGTGTGAGAGGAGAATTCTGGGCTAGC  329

seq1  CGTAAGTGTATGCTTTCCATGTGAGAGGCTATAAACATATGGAGTTGGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGTGTATGCTTTCCATGTGAGAGGCTATAAACATATGGAGTTGGGC  379

seq1  TCCCTTTCCAATTTATTTAAAACAATTTTTATTGACAGATAACTCACAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCAATTTATTTAAAACAATTTTTATTGACAGATAACTCACAAA  429

seq1  CTGAAATGTGTGTACCTTACTGCTGACAATGAATATACCCACCTATGTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTGTGTACCTTACTGCTGACAATGAATATACCCACCTATGTAA  479

seq1  CTGGATCACTGACAAGATGAAGACTGGTTTCATCACCCCAGATGGGGGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCACTGACAAGATGAAGACTGGTTTCATCACCCCAGATGGGGGCC  529

seq1  CTGAGGCGTCTGTTGTTCCTGTTCATTTCTCTCTAGAAATGTTTTTACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCGTCTGTTGTTCCTGTTCATTTCTCTCTAGAAATGTTTTTACTT  579

seq1  AGTCTAGAACAGCAGCTCCTTCTTCCCGCTCCTCTTCCTCCTCCAAGTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAACAGCAGCTCCTTCTTCCCGCTCCTCTTCCTCCTCCAAGTTC  629

seq1  TGGGAGTGTAGGTATGTGCCGCCATGTGTGCAGTCTTAGTGGATACATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGTAGGTATGTGCCGCCATGTGTGCAGTCTTAGTGGATACATCC  679

seq1  CAGCCACACCAGCTGTCAATCTCTCTAGAGCATTGTTCATACAATACCGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACCAGCTGTCAATCTCTCTAGAGCATTGTTCATACAATACCGT  729

seq1  CTTCGATATTTTTCACTCATCATTAATTTTGAACTTCATTCATATTTGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGATATTTTTCACTCATCATTAATTTTGAACTTCATTCATATTTGTG  779

seq1  TTCATAGTTCATTGTTTTTAATTGCTGTTGATGGTCATATGACCTGTGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTTCATTGTTTTTAATTGCTGTTGATGGTCATATGACCTGTGTC  829

seq1  CCGTCTTGGGCAATTATGAATAAAACTGCTGTGAGCCTTAGTGAGCAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTGGGCAATTATGAATAAAACTGCTGTGAGCCTTAGTGAGCAAGT  879

seq1  ATTTTATTGACACATATTTTCATTTCTCTTGAAACGAGGACCCATAGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGACACATATTTTCATTTCTCTTGAAACGAGGACCCATAGGAA  929

seq1  AGATGTGTATTTGATAATAAGAAACTTCTGTCCATTGTGTGAAGAGCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTATTTGATAATAAGAAACTTCTGTCCATTGTGTGAAGAGCTTA  979

seq1  CATCATCTTACAGTCCAGCTTCCATTTTCCCATACCCTTCCCAACTGTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTTACAGTCCAGCTTCCATTTTCCCATACCCTTCCCAACTGTTG  1029

seq1  GCAGTTGTACTCGTTTTTTATTACGGAGAATTCTACCACAGACAGGGCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGTACTCGTTTTTTATTACGGAGAATTCTACCACAGACAGGGCAG  1079

seq1  CATCTGAAAGCAACATATGTGTAAGCACTCACAACTCTAGGCTAGAAATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAGCAACATATGTGTAAGCACTCACAACTCTAGGCTAGAAATC  1129

seq1  ACACAGGATTCAGCTGGGTTTCCTGCTCGGGTTCTCAAGAAGGTGTAGAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGATTCAGCTGGGTTTCCTGCTCGGGTTCTCAAGAAGGTGTAGAT  1179

seq1  TCAACTGAATTC  1210
      ||||||||||||
seq2  TCAACTGAATTC  1191

seq1: chr5_93145002_93145300
seq2: B6Ng01-092L12.g_76_374

seq1  CTGTGAAAGAGAAAGAGGAGAGCAGGAAAACATGCCTGAGGCTGGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAGAGAAAGAGGAGAGCAGGAAAACATGCCTGAGGCTGGAGATG  50

seq1  TGGGTTCAGAGGTTAACAGCACTGGCTGCTCTTCCACAGGGCTGAAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAGAGGTTAACAGCACTGGCTGCTCTTCCACAGGGCTGAAGTTT  100

seq1  TGTTTGCCTGTCTGGGGCAGCGCCCCATGAACTGTAGCTCTTGCTCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTGTCTGGGGCAGCGCCCCATGAACTGTAGCTCTTGCTCAAGG  150

seq1  GGCTCTGATGCCCTCCTCAGGCTTCTGTAGGCACCTGTACACACATGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGATGCCCTCCTCAGGCTTCTGTAGGCACCTGTACACACATGCAT  200

seq1  TGGCATACCCTGATGCATTGGGACACATACACACACATGCGAGGAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACCCTGATGCATTGGGACACATACACACACATGCGAGGAGAGAG  250

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  299
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  299