BAC Information

Click to search

BAC

Clone NameB6Ng01-092M11
Chromosome5 (Build37)
Map Location 50,877,980 - 51,008,228
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092M11.bB6Ng01-092M11.g
ACCDH904443DH904444
length1,0461,069
definitionDH904443|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M11, 5' end.DH904444|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,877,980 - 50,879,031)(51,007,154 - 51,008,228)
sequence
gaattcaattaaaggaaacctatttttaaagcccatcttagctactgcca
cctcaggagtcacaaccaggctggcatactgtaagtcattacagcatact
gtgtgaccagctcagggaatttgggaataagttatatttattatccttta
aaaattgccttgatatgagtttgattttgtgcttatccaaattatacagg
catttaaaattccatttctctgtgtgtttgtgtatgtttatatgacatct
ttttatatgatatgtatatgtgggtttatatatagatatcagataataac
ctatgggagtcagttctcatcttttgtctttatgtgggttatagaaatta
aactcaggtcattgggattaagcagcaaatgattgggcctgcttagtcat
cttgctagcatggctgtatctatttctaataaaacaaataacaggttttc
actagatagtgttcaaggtcttttggggaaaaatattggttctaattctg
gtatagggacattattttttctaagatcaaatgtcttattgttgtcgtgt
tgtctgtggaataatattctttacctcaaaagcagacatgatctgaattt
cttaggaaggaagatactctcaaatggattttttaaaaacatttgattca
gtcatattactcataaacctaaatatacgtatgcttctttgcccattgag
tgaactcaacaattgtggttcttcagatcaataatgaaaacccagtctca
gattcctgcctttcactttgctctgtattctctgtactgaactatacaat
gacattttgtaaacacactctgatactagcataagattttccatagtgtt
acttgaatacattgtaaagaccagttcagagccaatatggaaaccacatg
gtgatagaaaataggaagagaggaggttttagatatgtggacactttgtg
caaagaaggtaaagagcttcagaggaaaacagctgtaagagatgaaggta
tctcaggtttagtatcaaatagaacatttctatgcgtcattacagt
gaattccttgctaaaaaatatctaaaacaggggatttttagttctcagtt
aaagtatccatccaagggaagaacaaggcaatgaggacaggtgtcaaggt
caataccattgctcagttgtgaactttggttaatattttcagccattcta
tttataacttaaaatatccaactgctgccgttcgaaaactcagatttggc
ttttctggtgtgtatgcagtgtttgggtttttttttttcccccaatggtg
tccccaagtgaacttgaattcattaaagagattcaaatccactttcttgt
tgactcttcatcatatcggaagatgcagatgtgaatgacaaaagaaacag
gcttggcatgatcctcacaaacgtgtacatcccaaaacacagctcataaa
aagcattgtcagctcgcagagaggaaataggcacaaaagggaacaggtat
aagaagaaatgtgttgctggtttgtttacatatctaatcgtcctgaaatt
agtagatagctcttttcctggatcgttttctctatcagcttcaagccgtc
tgtatatcttgcatcataattgctatgcatgggccttattctgaacagaa
atcattgccatgagggaaccttattctgaatgacgttcattgcctggttt
tattcctagcttcctgggtgaatactgctacaaaacaatacaagaatgta
caccataaacagtgtttcagaactctgttcgctgatcttgggctaggata
aatcaacaaaggtagagaggtgctgattaaaggcacacttcaatggaaaa
ttattcaaagccgagattaatagaaactgctcaactaaaaagatctaggg
acccgggggaaaattataattcatgcaataatatgagaaaatgacaatgc
atctttcattctgtaataatatcataataatacatattttcatttatact
tagctttcatctatacttttcatagccttgatcattctactttttttttc
taaaatggactagtttaatctattaccatgaatgcttctggtggttccta
aagaatactgaacgcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50877980_50879031
seq2: B6Ng01-092M11.b_47_1092

seq1  GAATTCAATTAAAGGAAACCTATTTTTAAAGCCCATCTTAGCTACTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAAGGAAACCTATTTTTAAAGCCCATCTTAGCTACTGCCA  50

seq1  CCTCAGGAGTCACAACCAGGCTGGCATACTGTAAGTCATTACAGCATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAGTCACAACCAGGCTGGCATACTGTAAGTCATTACAGCATACT  100

seq1  GTGTGACCAGCTCAGGGAATTTGGGAATAAGTTATATTTATTATCCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACCAGCTCAGGGAATTTGGGAATAAGTTATATTTATTATCCTTTA  150

seq1  AAAATTGCCTTGATATGAGTTTGATTTTGTGCTTATCCAAATTATACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCCTTGATATGAGTTTGATTTTGTGCTTATCCAAATTATACAGG  200

seq1  CATTTAAAATTCCATTTCTCTGTGTGTTTGTGTATGTTTATATGACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAATTCCATTTCTCTGTGTGTTTGTGTATGTTTATATGACATCT  250

seq1  TTTTATATGATATGTATATGTGGGTTTATATATAGATATCAGATAATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGATATGTATATGTGGGTTTATATATAGATATCAGATAATAAC  300

seq1  CTATGGGAGTCAGTTCTCATCTTTTGTCTTTATGTGGGTTATAGAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGAGTCAGTTCTCATCTTTTGTCTTTATGTGGGTTATAGAAATTA  350

seq1  AACTCAGGTCATTGGGATTAAGCAGCAAATGATTGGGCCTGCTTAGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGTCATTGGGATTAAGCAGCAAATGATTGGGCCTGCTTAGTCAT  400

seq1  CTTGCTAGCATGGCTGTATCTATTTCTAATAAAACAAATAACAGGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAGCATGGCTGTATCTATTTCTAATAAAACAAATAACAGGTTTTC  450

seq1  ACTAGATAGTGTTCAAGGTCTTTTGGGGAAAAATATTGGTTCTAATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAGTGTTCAAGGTCTTTTGGGGAAAAATATTGGTTCTAATTCTG  500

seq1  GTATAGGGACATTATTTTTTCTAAGATCAAATGTCTTATTGTTGTCGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGGACATTATTTTTTCTAAGATCAAATGTCTTATTGTTGTCGTGT  550

seq1  TGTCTGTGGAATAATATTCTTTACCTCAAAAGCAGACATGATCTGAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGGAATAATATTCTTTACCTCAAAAGCAGACATGATCTGAATTT  600

seq1  CTTAGGAAGGAAGATACTCTCAAATGGA-TTTTTAAAAACATTTGATTCA  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTAGGAAGGAAGATACTCTCAAATGGATTTTTTAAAAACATTTGATTCA  650

seq1  GTCATATTACTCATAAACCTAAATATACGTATGCTTCTTTGCCCATTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTACTCATAAACCTAAATATACGTATGCTTCTTTGCCCATTGAG  700

seq1  TGAACTCAACAATTGTGGTTCTTCAGATCAATAATGAAAACCCAGTCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAACAATTGTGGTTCTTCAGATCAATAATGAAAACCCAGTCTCA  750

seq1  GATTCCTGCC-TTCACTTTGCTCTGTATTCTCTGTACTGAACTATACAAT  798
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGCCTTTCACTTTGCTCTGTATTCTCTGTACTGAACTATACAAT  800

seq1  GACATTTTGTAAACACACTCTGATACTAGCATAAGATTTTCCATAGTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTGTAAACACACTCTGATACTAGCATAAGATTTTCCATAGTGTT  850

seq1  ACTTGAATACATTGTAAAAGACCAGTTCAGAGCCAATATGG-AACCACAT  897
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  ACTTGAATACATTGT-AAAGACCAGTTCAGAGCCAATATGGAAACCACAT  899

seq1  GGTGATAGAAAATAGGAAGAGAGGAGGTTTTAGAATATGTGGACAACTTT  947
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GGTGATAGAAAATAGGAAGAGAGGAGGTTTTAG-ATATGTGGAC-ACTTT  947

seq1  GTGCAAAGAAGGTAAAGAGCTTCCAGAGGAAAACAGCTGTAAAGAGATG-  996
      |||||||||||||||||||||| ||||||||||||||||| |||||||| 
seq2  GTGCAAAGAAGGTAAAGAGCTT-CAGAGGAAAACAGCTGT-AAGAGATGA  995

seq1  AGGTATCTCAGGGTTTTAGGTATCAAATAGAACATTTCTATGCGTCTATT  1046
      ||||||||||||  |||| ||||||||||||||||||||||||||| |||
seq2  AGGTATCTCAGG--TTTA-GTATCAAATAGAACATTTCTATGCGTC-ATT  1041

seq1  AACAGT  1052
       |||||
seq2  -ACAGT  1046

seq1: chr5_51007154_51008228
seq2: B6Ng01-092M11.g_70_1138 (reverse)

seq1  ACCTGCTGTCAGTATTCTCTGGGAACCA-CAGAAGCA-TCATGGTAAATA  48
      ||||||  |||||||||| | ||||||| |||||||| ||||||| ||||
seq2  ACCTGCGTTCAGTATTCTTTAGGAACCACCAGAAGCATTCATGGT-AATA  49

seq1  GATTAAACTAGTCCATTTTTAGAAAAAAAAAAGTGAGAATGATCAAGGCT  98
      ||||||||||||||| |||||| ||||||||||| |||||||||||||||
seq2  GATTAAACTAGTCCA-TTTTAG-AAAAAAAAAGT-AGAATGATCAAGGCT  96

seq1  ATGAAAAGTATAGATGAAAGCTAAGTATAAATGAAAATATGTATTATTAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGAAAAGTATAGATGAAAGCTAAGTATAAATGAAAATATGTATTATTA-  145

seq1  TGATATTATTACAGAATGAAAGATTGCATTGTCATTTTCTCATATTATTG  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGATATTATTACAGAATGAAAGA-TGCATTGTCATTTTCTCATATTATTG  194

seq1  CATGAATTATAATTTTCCCCCGGGTCCCTAGATCTTTTTAGTTGAGCAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTATAATTTTCCCCCGGGTCCCTAGATCTTTTTAGTTGAGCAGT  244

seq1  TTCTATTAATCTCGGCTTTGAAATAATTTTCCATTGAAGTGTGCCTTTTA  298
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  TTCTATTAATCTCGGCTTTG-AATAATTTTCCATTGAAGTGTGCC-TTTA  292

seq1  ATCAGCACCTCTCTACCTTTGTTGATTTATCCTAGCCCAAGATCAGCGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACCTCTCTACCTTTGTTGATTTATCCTAGCCCAAGATCAGCGAA  342

seq1  CAGAGTTCTGAAACACTGTTTATGGTGTACATTCTTGTATTGTTTTGTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTGAAACACTGTTTATGGTGTACATTCTTGTATTGTTTTGTAG  392

seq1  CAGTATTCACCCAGGAAGCTAGGAATAAAACCAGGCAATGAACGTCATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTCACCCAGGAAGCTAGGAATAAAACCAGGCAATGAACGTCATTC  442

seq1  AGAATAAGGTTCCCTCATGGCAATGATTTCTGTTCAGAATAAGGCCCATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGGTTCCCTCATGGCAATGATTTCTGTTCAGAATAAGGCCCATG  492

seq1  CATAGCAATTATGATGCAAGATATACAGACGGCTTGAAGCTGATAGAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAATTATGATGCAAGATATACAGACGGCTTGAAGCTGATAGAGAA  542

seq1  AACGATCCAGGAAAAGAGCTATCTACTAATTTCAGGACGATTAGATATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCCAGGAAAAGAGCTATCTACTAATTTCAGGACGATTAGATATGT  592

seq1  AAACAAACCAGCAACACATTTCTTCTTATACCTGTTCCCTTTTGTGCCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCAGCAACACATTTCTTCTTATACCTGTTCCCTTTTGTGCCTA  642

seq1  TTTCCTCTCTGCGAGCTGACAATGCTTTTTATGAGCTGTGTTTTGGGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCTGCGAGCTGACAATGCTTTTTATGAGCTGTGTTTTGGGATG  692

seq1  TACACGTTTGTGAGGATCATGCCAAGCCTGTTTCTTTTGTCATTCACATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTTTGTGAGGATCATGCCAAGCCTGTTTCTTTTGTCATTCACATC  742

seq1  TGCATCTTCCGATATGATGAAGAGTCAACAAGAAAGTGGATTTGAATCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTCCGATATGATGAAGAGTCAACAAGAAAGTGGATTTGAATCTC  792

seq1  TTTAATGAATTCAAGTTCACTTGGGGACACCATTGGGGGAAAAAAAAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAATTCAAGTTCACTTGGGGACACCATTGGGGGAAAAAAAAAAA  842

seq1  CCCAAACACTGCATACACACCAGAAAAGCCAAATCTGAGTTTTCGAACGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACACTGCATACACACCAGAAAAGCCAAATCTGAGTTTTCGAACGG  892

seq1  CAGCAGTTGGATATTTTAAGTTATAAATAGAATGGCTGAAAATATTAACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTGGATATTTTAAGTTATAAATAGAATGGCTGAAAATATTAACC  942

seq1  AAAGTTCACAACTGAGCAATGGTATTGACCTTGACACCTGTCCTCATTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCACAACTGAGCAATGGTATTGACCTTGACACCTGTCCTCATTGC  992

seq1  CTTGTTCTTCCCTTGGATGGATACTTTAACTGAGAACTAAAAATCCCCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTTCCCTTGGATGGATACTTTAACTGAGAACTAAAAATCCCCTG  1042

seq1  TTTTAGATATTTTTTAGCAAGGAATTC  1075
      |||||||||||||||||||||||||||
seq2  TTTTAGATATTTTTTAGCAAGGAATTC  1069