BAC Information

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BAC

Clone NameB6Ng01-092M18
Chromosome8 (Build37)5 (Build37)
Map Location 125,750,698 - 125,751,40887,004,991 - 87,005,694
singlet/doubletsingletsinglet
Overlap geneCdk10
Upstream geneGm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik
Downstream geneSpata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092M18.bB6Ng01-092M18.g
ACCDH904457DH904458
length748997
definitionDH904457|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M18, 5' end.DH904458|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(125,750,698 - 125,751,408)(87,004,991 - 87,005,694)
sequence
cttaatttcctctatagggggagagggatcctgcggaattcccaagctca
catcttgggaaccgattaaggaccaagtgttgctggacattatgttgtca
gagaaaaagaagaatttcagcaaactcttaagagagtttgatggtttgag
gtaggctccattgcatgtgtgctcctgtttcagatcgggccagggatacc
cagacagatgaaattgtcgccctgaagaaggtgcggatggacaaagagaa
ggatggtaagctgggggcaggatgcaggagtaccctgcctgctcgggcat
ccaagcagggaggcgcacaagcacaggtcatctgaggttcctcaggactg
acgctacggagggcgtgtgcattgcagttagggagctggcccagcctgtc
accacagtctgtcaccgcagccggaacctgagctccctgagtccttccag
accttcctcaccttggccagctgtaaaattgtatattctctccaaaccct
tttgcccctgtcctctagggaggtcattgtcaccctccaaatctacatct
gtaatgaattcaagagtaagaacggtgttggtgtcaccgtaatttgtccc
tgacgggaggacaggatgtgtggtgtcccgggtggcactcactgagcacc
ttgggttacaggcatccccatcagcagcctgcgtgagatcacactgctct
tgcgtctccgccatccaaacattgtggagctgaaggaggtggttgtgt
gaattccacacccctaagccccttaccccataaaaacccctagctttcga
gcctcgtggccgacatccgttatctcctttgtgggatgcatgtcggtccg
gagctccgtcattaaacatcctcatgtaattacatcaagagatggtcctt
cgtgatttttgggtgcacactgaatcaatcgggagttgagtgggtgtttc
cccactaggttttaacatttcggaggtcctaccgagatctgtgtgacacc
caagaaccccaaaggaccccttggagttacgtttgcttgtgtgagtcttg
tatgttgtctgttgtctaagtgtggcaccgctgaatttgtgtcttggttt
ttcaggtctgagattgagggtttgagtcccacctgtgttaccagttctgg
tattctgtattctggcagctgccactgtggaccgtaaggaccctagtggc
tgtgggaggacgacagtctggccccacaggctgcacccctggaagacgtt
ccaagggagaccctggagggagtgcccagagtacagaacagtcaggagga
cctggctgttgcctggcagagtgaaggaaagagagtgttctctctgccag
agcgggagtgtacgtggaatcccacctcgtcaggaagggagtcgaggtgg
aatccgaccccgtcaggaaatagcgttttggctggttgtataagtccaga
ctcggacgagtgtgcttagatatactggtgtctttttttctctgttgcta
tcttgtttttgtttgtagttttttgtcatgagacacagacactgtacatt
ggaggtaaagtagaatccctccctgcctgtctgtctgtatgtctgtgtgt
ctgtctgtcttgttcattggttgttcttccatggaccacctttctgattc
tgttttgtttttggttgtctggtttcaggtctcgtttggtccaaggattt
atctgattatcttggtttggttttaggcggtctcaggtctggggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_125750698_125751408
seq2: B6Ng01-092M18.b_36_747

seq1  GAATTCCCAAGCTCACATCTTGGGAACGGAAGAAGGACCAAGTGTTGCTG  50
      ||||||||||||||||||||||||||| ||  ||||||||||||||||||
seq2  GAATTCCCAAGCTCACATCTTGGGAACCGATTAAGGACCAAGTGTTGCTG  50

seq1  GACATTATGTTGTCAGAGAAAAAGAAGAATTTCAGCAAACTCTTAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATGTTGTCAGAGAAAAAGAAGAATTTCAGCAAACTCTTAAGAGA  100

seq1  GTTTGATGGTTTGAGGTAGGCTCCATTGCATGTGTGCTCCTGTTTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATGGTTTGAGGTAGGCTCCATTGCATGTGTGCTCCTGTTTCAGAT  150

seq1  CGGGCCAGGGATACCCAGACAGATGAAATTGTCGCCCTGAAGAAGGTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCAGGGATACCCAGACAGATGAAATTGTCGCCCTGAAGAAGGTGCG  200

seq1  GATGGACAAAGAGAAGGATGGTAAGCTGGGGGCAGGATGCAGGAGTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACAAAGAGAAGGATGGTAAGCTGGGGGCAGGATGCAGGAGTACCC  250

seq1  TGCCTGCTCGGGCATCCAAGCAGGGAGGCGCACAAGCACAGGTCATCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTCGGGCATCCAAGCAGGGAGGCGCACAAGCACAGGTCATCTGA  300

seq1  GGTTCCTCAGGACTGACGCTACGGAGGGCGTGTGCATTGCAGTTAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTCAGGACTGACGCTACGGAGGGCGTGTGCATTGCAGTTAGGGAG  350

seq1  CTGGCCCAGCCTGTCACCACAGTCTGTCACCGCAGCCGGAACCTGAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAGCCTGTCACCACAGTCTGTCACCGCAGCCGGAACCTGAGCTC  400

seq1  CCTGAGTCCTTCCAGACCTTCCTCACCTTGGCCAGCTGTAAAATTGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCCTTCCAGACCTTCCTCACCTTGGCCAGCTGTAAAATTGTATA  450

seq1  TTCTCTCCAAACCCTTTTGCCCCTGTCCTCTAGGGAGGTCATTGTCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCAAACCCTTTTGCCCCTGTCCTCTAGGGAGGTCATTGTCACCC  500

seq1  TCCAAATCTACATCTGTAATGAATTCAAGAGTAAGAACGGTGTTGGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCTACATCTGTAATGAATTCAAGAGTAAGAACGGTGTTGGTGTC  550

seq1  ACCGTAA-TTGTCCCTGACGGGAGGACAGGATGTGTGGTGTCCCGGGTGG  599
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTAATTTGTCCCTGACGGGAGGACAGGATGTGTGGTGTCCCGGGTGG  600

seq1  CACTCACTGAGCACCTTGGGTTACAGGCATCCCCATCAGCAGCCTGCGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTGAGCACCTTGGGTTACAGGCATCCCCATCAGCAGCCTGCGTG  650

seq1  AGATCACACTGCTCTTGCGTCTCCGCCATCCAAACATTGTGGAGCTGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACACTGCTCTTGCGTCTCCGCCATCCAAACATTGTGGAGCTGAAG  700

seq1  GAGGTGGTTGTG  711
      ||||||||||||
seq2  GAGGTGGTTGTG  712

seq1: chr5_87004991_87005694
seq2: B6Ng01-092M18.g_357_1055

seq1  TGTGAGTCTTGTATGTTGTCTGTTGTCTAAGTGTCTAAGTGTGGCACCGC  50
      |||||||||||||||||||||||        |||||||||||||||||||
seq2  TGTGAGTCTTGTATGTTGTCTGT--------TGTCTAAGTGTGGCACCGC  42

seq1  TGAATTTGTGTCTTGGTTTTTCAGTTCTGAGATTGTGGGTTTGAGTCCCA  100
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  TGAATTTGTGTCTTGGTTTTTCAGGTCTGAGATTGAGGGTTTGAGTCCCA  92

seq1  CCTGTGTTACCAGTTCTGGTATTCTGTATTCTGGCAGCTGCCACTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTACCAGTTCTGGTATTCTGTATTCTGGCAGCTGCCACTGTGGA  142

seq1  CTGTAAGGACCCTAGTGGCTGTGGGAGGACGACGGTCTATGGCCCCACAG  200
      | ||||||||||||||||||||||||||||||| |||  |||||||||||
seq2  CCGTAAGGACCCTAGTGGCTGTGGGAGGACGACAGTC--TGGCCCCACAG  190

seq1  GCTGCACCCCTGGAAGACGTTCCAAGGGAGACCCTGGAGGGAGTGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCCCTGGAAGACGTTCCAAGGGAGACCCTGGAGGGAGTGCCCAG  240

seq1  GATAAGGAACAGTCAGGAGGACCTGGCTGTTGCCTGGCAGAGTGAAAGAG  300
        ||  |||||||||||||||||||||||||||||||||||||||| || 
seq2  AGTACAGAACAGTCAGGAGGACCTGGCTGTTGCCTGGCAGAGTGAAGGAA  290

seq1  AAAGAGTGTTCTCTCTGCCAGAGTGGGAGTGGACGTGGAATCCCACCCTG  350
      | ||||||||||||||||||||| ||||||| |||||||||||||||  |
seq2  AGAGAGTGTTCTCTCTGCCAGAGCGGGAGTGTACGTGGAATCCCACCTCG  340

seq1  TCA-GAAGGAAGTCGAGGTGGAATCCAGCCCCGTCAGGAAATAGC-ATTT  398
      ||| ||||| ||||||||||||||||  |||||||||||||||||  |||
seq2  TCAGGAAGGGAGTCGAGGTGGAATCCGACCCCGTCAGGAAATAGCGTTTT  390

seq1  GGCTGGTTGTATAAGTCCAGATGC-----AGTGTG-TTAGATATACTGGT  442
      |||||||||||||||||||||  |     |||||| ||||||||||||||
seq2  GGCTGGTTGTATAAGTCCAGACTCGGACGAGTGTGCTTAGATATACTGGT  440

seq1  GTCTTTTTTTTCTCTGTTGCTATCTTGTTTTTGTTTGT-GGTTTTTGTCA  491
      ||| |||||||||||||||||||||||||||||||||| | |||||||||
seq2  GTC-TTTTTTTCTCTGTTGCTATCTTGTTTTTGTTTGTAGTTTTTTGTCA  489

seq1  TGTGACACAGACACTGTACA-TCGAGGTAAAGTAGAATCCCTCCCTGCCT  540
      || ||||||||||||||||| | |||||||||||||||||||||||||||
seq2  TGAGACACAGACACTGTACATTGGAGGTAAAGTAGAATCCCTCCCTGCCT  539

seq1  GTCTGTCTGTATGTCTGTGTGTCTGTCTGTCTTGTTCATTTGTGTGTCCT  590
      |||||||||||||||||||||||||||||||||||||||| || ||| ||
seq2  GTCTGTCTGTATGTCTGTGTGTCTGTCTGTCTTGTTCATTGGT-TGTTCT  588

seq1  CCATTGGACCATC-TTCTGATTCTGTTTTGTTTTTGGTTTGTCTGGTTTC  639
       |  ||||||| | ||||||||||||||||||||||| ||||||||||||
seq2  TCCATGGACCACCTTTCTGATTCTGTTTTGTTTTTGG-TTGTCTGGTTTC  637

seq1  AAGTCTGGTTTTGGTCCCAAGGAGTTGACTGATTATCTTGGTTTGGTTTT  689
      | |||| | |||||| ||||||| ||  ||||||||||||||||||||||
seq2  AGGTCTCG-TTTGGT-CCAAGGATTTATCTGATTATCTTGGTTTGGTTTT  685

seq1  AGGCTGGTCTCAGGT  704
      |||| ||||||||||
seq2  AGGC-GGTCTCAGGT  699