BAC Information

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BAC

Clone NameB6Ng01-092P01
Chromosome5 (Build37)
Map Location 79,952,428 - 80,095,143
singlet/doubletdoublet
Overlap genenone
Upstream geneEG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092P01.bB6Ng01-092P01.g
ACCDH904563DH904564
length8541,091
definitionDH904563|Mus musculus domesticus DNA, BAC clone: B6Ng01-092P01, 5' end.DH904564|Mus musculus domesticus DNA, BAC clone: B6Ng01-092P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,093,998 - 80,095,143)(79,952,428 - 79,953,533)
sequence
gaattcagatcctaatagagtatttttaaacctcaaaacgattttttgtc
caaaaagaaattcaagactaggattaaaattgattagtagaaaagataat
tagaaacataaaatggtatgaagaaaaacatgtccagagagatgaaacag
agagaaccaccctaatgcaccttttctattggtgccatttctgactacaa
cttcattttaatagagctaatctctgtaacaattatagttataggaaatt
tatgctattgtataaactccattaccccaaaattcccattttcatgtaat
atttctgcattcttttaccatataaatccaatatcaatccatagtatcct
tgtccctgttgggctgttaagatgtcttaaatttcatgaacaaatttgta
accaaaattcatatataattttcactcatttcatcagggaacagacagaa
tgtgtcagattcattgatagaatataacatgaatgctatccttccaagta
cccaataagtgtctttcttccctctgaaatctaatgaaactggctttaac
cccgaaaaaccctcttacatcctggtcttctagacagttactggagatac
ccattagtctcttcttatacgctagggctaccatagcctcaagtcctaaa
ctcttttacattctttccaccacatcatccacatgtggtagaccacatga
agagctttattatagcaacagtctaggactatacagtttgatttcatttt
ataatttcttcagtgacaatccaacaatgcatttatgtaaagaggattta
ctcattgtttgaaggaattagttgatgattgggacagatatgatttgact
gtcc
ctttcctttccctactctctctcagcagagaactttatagtcttctgttg
aacagaaccctgaatactaaaacctgcttatcctgtcccctgccatgttt
gaccttgacttgcactgaaactaggtcatatcttccttcgactctccagt
ttgccaaatgcaagcgatgcaaatgctcaacctctgcatgtgtgtaaatg
attcacacagagcatagccaccaaaacctaaatgaaatagaaagcaagag
agagccttgaccaatacacatttgctggcagttagtaagtgacgatatac
agtaaaaacttttccatttttcacttacgaagcagtccataaaaagagat
aggaggtctaaaggaaccaaaaaatgaagaaagaattcagctttatattt
tttgtctcaactatgatttacacattttggcctaaggagggaaaaggact
aaaagaactcaaaatttgatctttgtttaaaacagtcagtgtttcctgat
ttactgaaccaatttcccatagatctgagtaacatcagttttgtcacaat
ggaagaaaaaaggctgcagcccggagagaagctttagagaaagatgtgat
gaatggaatacccgggccagtcctgtcacaggcaggatagatttctctgc
aaactgatatttgagattcaggtttactgaggagaaaaatcaacagattc
tcattttaacatctatttctcagctggtttttcgtggcgaatgtacaaag
taatttcatggaaagagggaagtaatcacccgatgacctttgaagatcat
agggaacataaagatgacaagttcactgaaagttccaactctaggactgt
tttcaaactgttctttctttttatttcatcatgttagaagatttccctct
tacatataaagggaaaacaatttgatcaaatttaattatataaaatgttt
ggacatatttagtgatatattcattggatagcacacttagtcctggatta
tttacagctagcgtcagacatatgttttgtgtctatacaaccttcgcaga
aagccatcaaaaaaagtcagtcctaccattgttagactatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80093998_80095143
seq2: B6Ng01-092P01.b_48_901 (reverse)

seq1  GGACAGTCAAGCTGTGCTAAACTTCAGAATAGTGTCAAAGCCACTTGATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TACTTCCCAGTCCTTCTCTATCTAAACATTCACTTACAAATTATAATCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTATAAAAATATATGATCTCCTCTTTAAACCTACTGGATTTAAAATTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TATAATAGATATGTTGGTGGTGTGTCTGAGAATATTTCCTGAAAGCTTAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAAAAAAGATGACATAACATGAACCTCATGTAGCACAATCTCCTAGTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGGACTCAAGGGTTGAAGAAAGGGGTGACCAGTCAGATCATATCCCTGTC  300
                                |  |||||| |||||||  |||||
seq2  --------------------------GGACAGTCAAATCATAT--CTGTC  22

seq1  CCTATCATCAACTATATTCCTTCAAACAATGAGTTAAAATCTCTCTTACA  350
      || ||||||||||| |||||||||||||||||| ||||  |||| |||||
seq2  CCAATCATCAACTA-ATTCCTTCAAACAATGAG-TAAATCCTCT-TTACA  69

seq1  TAAATTGCATTGTTTGGATTTGTCACTGAAAGATATTAATTAAAAATGAA  400
      |||| ||||||| ||||| ||||||||| |||| ||||    ||||||||
seq2  TAAA-TGCATTG-TTGGA-TTGTCACTG-AAGAAATTA---TAAAATGAA  112

seq1  ATCAAACTTGTATTAGTTCCTAGACTGTTGCTATAATAAAGCTCTTCATG  450
      ||||||| |||| ||| |||||||||||||||||||||||||||||||||
seq2  ATCAAAC-TGTA-TAG-TCCTAGACTGTTGCTATAATAAAGCTCTTCATG  159

seq1  TGGTTCTACCACATGTGGATGATGTGGTGGAAAGAATGTAAAAGAGTTTA  500
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-TCTACCACATGTGGATGATGTGGTGGAAAGAATGTAAAAGAGTTTA  208

seq1  GGACTTGAGGCTATGGTAGCCCTAGCGTATAAGAAGAGACTAATGGGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGAGGCTATGGTAGCCCTAGCGTATAAGAAGAGACTAATGGGTAT  258

seq1  CTCCAGTAACTGTCTAGAAGACCAGGATGTAAGAGGGTTTTTCGGGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTAACTGTCTAGAAGACCAGGATGTAAGAGGGTTTTTCGGGGTTA  308

seq1  AAGCCAGTTTCATTAGATTTCAGAGGGAAGAAAGACACTTATTGGGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTTCATTAGATTTCAGAGGGAAGAAAGACACTTATTGGGTACT  358

seq1  TGGAAGGATAGCATTCATGTTATATTCTATCAATGAATCTGACACATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGATAGCATTCATGTTATATTCTATCAATGAATCTGACACATTCT  408

seq1  GTCTGTTCCCTGATGAAATGAGTGAAAATTATATATGAATTTTGGTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCCCTGATGAAATGAGTGAAAATTATATATGAATTTTGGTTACA  458

seq1  AATTTGTTCATGAAATTTAAGACATCTTAACAGCCCAACAGGGACAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTCATGAAATTTAAGACATCTTAACAGCCCAACAGGGACAAGGA  508

seq1  TACTATGGATTGATATTGGATTTATATGGTAAAAGAATGCAGAAATATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGATTGATATTGGATTTATATGGTAAAAGAATGCAGAAATATTA  558

seq1  CATGAAAATGGGAATTTTGGGGTAATGGAGTTTATACAATAGCATAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATGGGAATTTTGGGGTAATGGAGTTTATACAATAGCATAAATT  608

seq1  TCCTATAACTATAATTGTTACAGAGATTAGCTCTATTAAAATGAAGTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAACTATAATTGTTACAGAGATTAGCTCTATTAAAATGAAGTTGT  658

seq1  AGTCAGAAATGGCACCAATAGAAAAGGTGCATTAGGGTGGTTCTCTCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAATGGCACCAATAGAAAAGGTGCATTAGGGTGGTTCTCTCTGT  708

seq1  TTCATCTCTCTGGACATGTTTTTCTTCATACCATTTTATGTTTCTAATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCTCTGGACATGTTTTTCTTCATACCATTTTATGTTTCTAATTA  758

seq1  TCTTTTCTACTAATCAATTTTAATCCTAGTCTTGAATTTCTTTTTGGACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTACTAATCAATTTTAATCCTAGTCTTGAATTTCTTTTTGGACA  808

seq1  AAAAATCGTTTTGAGGTTTAAAAATACTCTATTAGGATCTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCGTTTTGAGGTTTAAAAATACTCTATTAGGATCTGAATTC  854

seq1: chr5_79952428_79953533
seq2: B6Ng01-092P01.g_75_1165

seq1  CTTTCCTTTCCCTACTCTCTCTCAGCAGAGAACTTTATAGTCTTCTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCCCTACTCTCTCTCAGCAGAGAACTTTATAGTCTTCTGTTG  50

seq1  AACAGAACCCTGAATACTAAAACCTGCTTATCCTGTCCCCTGCCATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACCCTGAATACTAAAACCTGCTTATCCTGTCCCCTGCCATGTTT  100

seq1  GACCTTGACTTGCACTGAAACTAGGTCATATCTTCCTTCGACTCTCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGACTTGCACTGAAACTAGGTCATATCTTCCTTCGACTCTCCAGT  150

seq1  TTGCCAAATGCAAGCGATGCAAATGCTCAACCTCTGCATGTGTGTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAATGCAAGCGATGCAAATGCTCAACCTCTGCATGTGTGTAAATG  200

seq1  ATTCACACAGAGCATAGCCACCAAAACCTAAATGAAATAGAAAGCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACAGAGCATAGCCACCAAAACCTAAATGAAATAGAAAGCAAGAG  250

seq1  AGAGCCTTGACCAATACACATTTGCTGGCAGTTAGTAAGTGACGATATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTGACCAATACACATTTGCTGGCAGTTAGTAAGTGACGATATAC  300

seq1  AGTAAAAACTTTTCCATTTTTCACTTACGAAGCAGTCCATAAAAAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAACTTTTCCATTTTTCACTTACGAAGCAGTCCATAAAAAGAGAT  350

seq1  AGGAGGTCTAAAGGAACCAAAAAATGAAGAAAGAATTCAGCTTTATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCTAAAGGAACCAAAAAATGAAGAAAGAATTCAGCTTTATATTT  400

seq1  TTTGTCTCAACTATGATTTACACATTTTGGCCTAAGGAGGGAAAAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCAACTATGATTTACACATTTTGGCCTAAGGAGGGAAAAGGACT  450

seq1  AAAAGAACTCAAAATTTGATCTTTGTTTAAAACAGTCAGTGTTTCCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTCAAAATTTGATCTTTGTTTAAAACAGTCAGTGTTTCCTGAT  500

seq1  TTACTGAACCAATTTCCCATAGATCTGAGTAACATCAGTTTTGTCACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAACCAATTTCCCATAGATCTGAGTAACATCAGTTTTGTCACAAT  550

seq1  GGAAGAAAAAAGGCTGCAGCCCGGAGAGAAGCTTTAGAGAAAGATGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAAAAGGCTGCAGCCCGGAGAGAAGCTTTAGAGAAAGATGTGAT  600

seq1  GAATGGAATACCCGGGCCAGTCCTGTCACAGGCAGGATAGATTTCTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAATACCCGGGCCAGTCCTGTCACAGGCAGGATAGATTTCTCTGC  650

seq1  AAACTGATATTTGAGATTCAGGTTTACTGAGGAGAAAAATCAACAGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATATTTGAGATTCAGGTTTACTGAGGAGAAAAATCAACAGATTC  700

seq1  TCATTTTAACATCTATTTCTCAGCTGGTTTTTCGTGGCGAATGTACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAACATCTATTTCTCAGCTGGTTTTTCGTGGCGAATGTACAAAG  750

seq1  TAATTTCATGGAAAGAGGGAAGTAATCACCCGATGACCTTTGAAGATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATGGAAAGAGGGAAGTAATCACCCGATGACCTTTGAAGATCAT  800

seq1  AGGGAACATAAAGATGACAAGTTCACTGAAAGTTCCAACTCTAGGACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACATAAAGATGACAAGTTCACTGAAAGTTCCAACTCTAGGACTGT  850

seq1  TTTCAAACTGTTCTTTCTTTTTATTTCATCATGTTAGAAGATTTCCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTGTTCTTTCTTTTTATTTCATCATGTTAGAAGATTTCCCTCT  900

seq1  TACATATAAAGGGAAAACAATTTGATCAAATTTAATTATATAAAAATGTT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACATATAAAGGGAAAACAATTTGATCAAATTTAATTATAT-AAAATGTT  949

seq1  TGGACATATTTAGTGATATATTCATTGGAATAAGCACACTTAGGTCCTGG  1000
      |||||||||||||||||||||||||||||   |||||||||| |||||||
seq2  TGGACATATTTAGTGATATATTCATTGGA--TAGCACACTTA-GTCCTGG  996

seq1  TTTATTTACAAGGCTTAGGCGTTCAGGACATATGTTTTGGTTGGTCTAAT  1050
       |||||||||  |||   ||| ||| |||||||||||||    |||||  
seq2  ATTATTTACA--GCT--AGCG-TCA-GACATATGTTTTG---TGTCTA--  1035

seq1  TACAACCTTCGCAGAAAGCCATCAAAAAAAAGTCAGT-CTACCAGTGGTA  1099
      ||||||||||||||||||||||| ||||||||||||| |||||| || ||
seq2  TACAACCTTCGCAGAAAGCCATC-AAAAAAAGTCAGTCCTACCATTGTTA  1084

seq1  GACTATC  1106
      |||||||
seq2  GACTATC  1091