BAC Information

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BAC

Clone NameB6Ng01-093D12
Chromosome5 (Build37)
Map Location 116,445,615 - 116,575,766
singlet/doubletdoublet
Overlap geneCit, Prkab1, LOC545798, Ccdc60
Upstream geneSppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032
Downstream gene4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093D12.bB6Ng01-093D12.g
ACCDH904766DH904767
length1,174220
definitionDH904766|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D12, 5' end.DH904767|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,445,615 - 116,446,778)(116,575,547 - 116,575,766)
sequence
gaattcacctatcagtgtgtttgtggagaactgtgaacgtcttgtctcca
aagccacagtttatccttggtggaacatacaatctcatgatacaaaggag
aatattcctcgtggatttgaagtcattttcaaggctgtgtagtatcccat
ggcatacttgaacagaaatgagttctgactaggcagaatagtgagctcat
acctgttcattctctaagtgcacacaccatgggaggcatccgagtgctgt
cttgtcagatgttgttctctagttgtatgtcctaaatgcagagtaggtca
aagaagaaacagatgtgcaggcccataagttctgcaggaccaggatgctc
gctctctctctctctctctctctcacacacacacacacacacaaatacag
acagatatacactcacacatgcacacacacatctctgtcagaaacacaca
cacatctctgtctctgtcacacatccacacacatacatccacacacacgc
acacacattcacgcacatgcacggagtaaataaacaaatgtaaaagaaaa
tactttttttgttgttattgctcacctgttgctatgtaatgagcaatcct
ggatcttaggagctttaagcagctgctgttgtccccggctctgggtctgt
taggctgtgtccctcatggtgtcactgggatctagggcaatcagaaggta
caaaaacagccttagaaacaaggagaagcaaggtgccttctctgtctctc
tcttctgttgttggccacgggggtcacttagctagaggccttggttcctc
tctatctagactcatccaggacatagacagaggcttcatgggcctttctc
ttgcaccacattatgctggttcaggcaggccaacagagctgccatgttca
gagtcatggcttgccacaggagcagccgtgacaacagaggagggaacagg
gcccggcccgtcttctctggcagtagtgtcccttctttagagagataagt
gttaagacatagctgcattgctcgcaaccaggaaggttctgggggttcat
caaccaggcttgggcacaatgggggaggacgttctccaaattggagcaag
taacaataaggccctgctgtatatctaattcctgatatttttaaaaactc
ggcttggagaaggacaggggagag
aaggtgtggcatttgggtgcggcaatcagatcttaggagaacaagctatc
atttgtgagcttttgtaaattcgacaacctagtgccatgtgttttgcctg
cgtaatgtaattatttatattggcatatgacattcctgagtacatacaga
tgaataaatgaatggataaagagatggataaataggtagtagtataggca
gatgggtgggtggataagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116445615_116446778
seq2: B6Ng01-093D12.b_42_1215

seq1  GAATTCACCTATCAGTGTGTTTGTGGAGAACTGTGAACGTCTTGTCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTATCAGTGTGTTTGTGGAGAACTGTGAACGTCTTGTCTCCA  50

seq1  AAGCCACAGTTTATCCTTGGTGGAACATACAATCTCATGATACAAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGTTTATCCTTGGTGGAACATACAATCTCATGATACAAAGGAG  100

seq1  AATATTCCTCGTGGATTTGAAGTCATTTTCAAGGCTGTGTAGTATCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTCGTGGATTTGAAGTCATTTTCAAGGCTGTGTAGTATCCCAT  150

seq1  GGCATACTTGAACAGAAATGAGTTCTGACTAGGCAGAATAGTGAGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACTTGAACAGAAATGAGTTCTGACTAGGCAGAATAGTGAGCTCAT  200

seq1  ACCTGTTCATTCTCTAAGTGCACACACCATGGGAGGCATCCGAGTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCATTCTCTAAGTGCACACACCATGGGAGGCATCCGAGTGCTGT  250

seq1  CTTGTCAGATGTTGTTCTCTAGTTGTATGTCCTAAATGCAGAGTAGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGATGTTGTTCTCTAGTTGTATGTCCTAAATGCAGAGTAGGTCA  300

seq1  AAGAAGAAACAGATGTGCAGGCCCATAAGTTCTGCAGGACCAGGATGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAACAGATGTGCAGGCCCATAAGTTCTGCAGGACCAGGATGCTC  350

seq1  GCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAAATACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAAATACAG  400

seq1  ACAGATATACACTCACACATGCACACACACATCTCTGTCAGAAACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATACACTCACACATGCACACACACATCTCTGTCAGAAACACACA  450

seq1  CACATCTCTGTCTCTGTCACACATCCACACACATACATCCACACACACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTGTCTCTGTCACACATCCACACACATACATCCACACACACGC  500

seq1  ACACACATTCACGCACATGCACGGAGTAAATAAACAAATGTAAAAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTCACGCACATGCACGGAGTAAATAAACAAATGTAAAAGAAAA  550

seq1  TACTTTTTTTGTTGTTATTGCTCACCTGTTGCTATGTAATGAGCAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTGTTGTTATTGCTCACCTGTTGCTATGTAATGAGCAATCCT  600

seq1  GGATCTTAGGAGCTTTAAGCAGCTGCTGTTGTCCCCGGCTCTGGGTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTAGGAGCTTTAAGCAGCTGCTGTTGTCCCCGGCTCTGGGTCTGT  650

seq1  TAGGCTGTGTCCCTCATGGTGTCACTGGGATCTAGGGCAATCAGAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTGTCCCTCATGGTGTCACTGGGATCTAGGGCAATCAGAAGGTA  700

seq1  C-AAAACAGCCTTAGAAACAAGGAGAAGCAAGGTGCCTTCTCTGTCTCTC  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAGCCTTAGAAACAAGGAGAAGCAAGGTGCCTTCTCTGTCTCTC  750

seq1  TCTTCTGTTGTTGGCCACGGGGGTCACTTAGCTAGAGGCCTTGGTTCCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTGTTGGCCACGGGGGTCACTTAGCTAGAGGCCTTGGTTCCTC  800

seq1  TCTATCTAGACTCATCCAGGACATAGACAGAGGCTTCAT-GGCCTTTCTC  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTATCTAGACTCATCCAGGACATAGACAGAGGCTTCATGGGCCTTTCTC  850

seq1  TTGCACCACATTATGCTGGTTCAGGCAGGCCAACAGAGCTGCCATGTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCACATTATGCTGGTTCAGGCAGGCCAACAGAGCTGCCATGTTCA  900

seq1  GAGTCATGGCTTGCCACAGGAGCAGCCGTGACAACAGAGGAGGGAACAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGGCTTGCCACAGGAGCAGCCGTGACAACAGAGGAGGGAACAGG  950

seq1  GCCCGGCCCGTCTTCTCTGGCAGTAGTGTCCCCTC-TTAGAGAGATAAGT  997
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  GCCCGGCCCGTCTTCTCTGGCAGTAGTGTCCCTTCTTTAGAGAGATAAGT  1000

seq1  GTTAAGACATAGCTGCAGTGCTCGCACACAGG-AGGTTCT-GGGGTTCAT  1045
      ||||||||||||||||| ||||||||  |||| ||||||| |||||||||
seq2  GTTAAGACATAGCTGCATTGCTCGCAACCAGGAAGGTTCTGGGGGTTCAT  1050

seq1  C-ACCA-GCCTGGGCAACATGGGG--AGACCGTCTCCAAATTGAAGCAAA  1091
      | |||| || ||||||  ||||||   |||  ||||||||||| ||| ||
seq2  CAACCAGGCTTGGGCACAATGGGGGAGGACGTTCTCCAAATTGGAGC-AA  1099

seq1  GTAACAATAAAGCCCTGCTGTAATATCTAAATCCTGAT-CTTTTAAAAAC  1140
      |||||||||| |||||||||| |||||||| |||||||  ||||||||||
seq2  GTAACAATAAGGCCCTGCTGT-ATATCTAATTCCTGATATTTTTAAAAAC  1148

seq1  TCGGCTTGGAG-AGGAC-GGGGAGAG  1164
      ||||||||||| ||||| ||||||||
seq2  TCGGCTTGGAGAAGGACAGGGGAGAG  1174

seq1: chr5_116575547_116575766
seq2: B6Ng01-093D12.g_76_295 (reverse)

seq1  CACTTATCCACCCACCCATCTGCCTATACTACTACCTATTTATCCATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATCCACCCACCCATCTGCCTATACTACTACCTATTTATCCATCTC  50

seq1  TTTATCCATTCATTTATTCATCTGTATGTACTCAGGAATGTCATATGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCATTCATTTATTCATCTGTATGTACTCAGGAATGTCATATGCCA  100

seq1  ATATAAATAATTACATTACGCAGGCAAAACACATGGCACTAGGTTGTCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAATTACATTACGCAGGCAAAACACATGGCACTAGGTTGTCGA  150

seq1  ATTTACAAAAGCTCACAAATGATAGCTTGTTCTCCTAAGATCTGATTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAAAGCTCACAAATGATAGCTTGTTCTCCTAAGATCTGATTGCC  200

seq1  GCACCCAAATGCCACACCTT  220
      ||||||||||||||||||||
seq2  GCACCCAAATGCCACACCTT  220