BAC Information

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BAC

Clone NameB6Ng01-093I20
Chromosome5 (Build37)
Map Location 46,158,778 - 46,159,923
singlet/doubletsinglet
Overlap geneLcorl
Upstream geneLdb2, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093I20.bB6Ng01-093I20.g
ACCDH905010DH905011
length1,0401,158
definitionDH905010|Mus musculus domesticus DNA, BAC clone: B6Ng01-093I20, 5' end.DH905011|Mus musculus domesticus DNA, BAC clone: B6Ng01-093I20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggttgagaagcacctgaaaaaaat
gttcagcatctgtaatcaccagggaaatgcaaatcaaacagccctgagat
tccatctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcttca
gaaaattggacatagtactaccggaggatcctgccatacctctcctgggc
atatatccagaagttgttccaactggtaagaaagaacatgctcctctatg
ttcatagcagctttatttataatagccagaagctggaaagaacccagatg
ccccttaacagaggaatcgatacaaaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaga
tggattgacctggagggcattatcttgagtgaggtaacccaatcacaaaa
gaactcacataatatgtactcactgataagtggatattagcccagaaact
tagaataaccaaggtacaagatacaaagcacatgaaactcaagaaaaacg
aagaccaaagtgtggacactttgccccttcttagaattgggaacaaaaca
cccatggaaggagttatagagacaaattttggagctgagacgaaagaatg
gaccatctagagactgtcatacctggggatccatcccataatcagtctcc
aaacgctgacaccattgcatacactagcaagattttgctgaaaggaccct
gtctcttgtgagactaagccgggggcctaagaaaacacagaagtggatgc
tcacagtcagttattggatggatccagggcctcaatggatgagctagata
agtactcaagaagctaatgggtctgcaccctattaggtgaacacatatga
actatccagtacccctggagctgtgtctctgctgcatatg
gaattcaactgatcaccattaaaacccttaaaataaaaatgtatttattg
ccagaccagattagaagcttcatgctaaaatccacattactagtcattaa
aaaattgtaaaattgtgggctcatgatgtctgactttatatgcatcactt
tcttgttttcttttctcccctcccactcccatgccccaggcaggctttct
ctgtgggataaagccctggtggttggtcctgctcacactcatgtagatca
agctgcccttgaactcagggatctgcctgctgagtgctgggtttaaagtt
gtgcgccaccatgactggctgtatgcatcattttttaaaaagagcctcaa
cagactggagtgtgtattatcaggttagcaaagtacctatcactaagtgg
aaaagatctgccatttgattttatggtgtcatgattgtggtggcctataa
tttctttggaccatagcttatctctgtagaatttattttactatacagaa
cagctgctatgtatttaaatttatctatacttgccagttaatactcagag
tgaaaacatatgctacaaggaaaaaaaattaagtacctctttattgggtg
aggcaaggaacactttctaaccaccatttgcaagttttaataattcagta
tctaagtatcaagacataatataaagccagaaatggcacttaaatttgta
aaaacagcatctgaaaagctaaagtagaagttcaaggccattctaggcca
taaagtaattccaggacagtctgcactatagtgagactcttatctccaca
aacaaaaaaagacattaatacaagagtatatctagaaaacaatttgggcc
ttttctcctttgtaattttcctatatttagttttctcttaatataagaca
attgtttatgtggatagactaggcagatccaggaaaactgaaccgtgttc
ttaccatactggcaaataataagcagagtttgtcttacatctttaacatg
gaaagacaagtaagatccccttgggaagggattacactgatcttgaaata
tttcctgggaatgtgagttcaggcacacgcagcctattttatttgccttc
tctttttcttggagctatacaaaagtgtggatcttctctagtgcttcaga
gtatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46158778_46159923
seq2: B6Ng01-093I20.g_69_1226

seq1  GAATTCAACTGATCACCATTAAAACCCTTAAAATAAAAATGTATTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGATCACCATTAAAACCCTTAAAATAAAAATGTATTTATTG  50

seq1  CCAGACCAGATTAGAAGCTTCATGCTAAAATCCACATTACTAGTCATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAGATTAGAAGCTTCATGCTAAAATCCACATTACTAGTCATTAA  100

seq1  AAAATTGTAAAATTGTGGGCTCATGATGTCTGACTTTATATGCATCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTAAAATTGTGGGCTCATGATGTCTGACTTTATATGCATCACTT  150

seq1  TCTTGTTTTCTTTTCTCCCCTCCCACTCCCATGCCCCAGGCAGGCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTCTTTTCTCCCCTCCCACTCCCATGCCCCAGGCAGGCTTTCT  200

seq1  CTGTGGGATAAAGCCCTGGTGGTTGGTCCTGCTCACACTCATGTAGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGATAAAGCCCTGGTGGTTGGTCCTGCTCACACTCATGTAGATCA  250

seq1  AGCTGCCCTTGAACTCAGGGATCTGCCTGCTGAGTGCTGGGTTTAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCTTGAACTCAGGGATCTGCCTGCTGAGTGCTGGGTTTAAAGTT  300

seq1  GTGCGCCACCATGACTGGCTGTATGCATCATTTTTTAAAAAGAGCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACCATGACTGGCTGTATGCATCATTTTTTAAAAAGAGCCTCAA  350

seq1  CAGACTGGAGTGTGTATTATCAGGTTAGCAAAGTACCTATCACTAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGAGTGTGTATTATCAGGTTAGCAAAGTACCTATCACTAAGTGG  400

seq1  AAAAGATCTGCCATTTGATTTTATGGTGTCATGATTGTGGTGGCCTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTGCCATTTGATTTTATGGTGTCATGATTGTGGTGGCCTATAA  450

seq1  TTTCTTTGGACCATAGCTTATCTCTGTAGAATTTATTTTACTATACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGACCATAGCTTATCTCTGTAGAATTTATTTTACTATACAGAA  500

seq1  CAGCTGCTATGTATTTAAATTTATCTATACTTGCCAGTTAATACTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTATGTATTTAAATTTATCTATACTTGCCAGTTAATACTCAGAG  550

seq1  TGAAAACATATGCTACAAGGAAAAAAAATTAAGTACCTCTTTATTGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACATATGCTACAAGGAAAAAAAATTAAGTACCTCTTTATTGGGTG  600

seq1  AGGCAAGGAACAC-TTCTAACCACCATTTGCAAG-TTTAATAATTCAGTA  648
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  AGGCAAGGAACACTTTCTAACCACCATTTGCAAGTTTTAATAATTCAGTA  650

seq1  TCTAAGTATCAAGACATAATATAAAGCCAGAAATGGCACTTAAATTTGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTATCAAGACATAATATAAAGCCAGAAATGGCACTTAAATTTGTA  700

seq1  AAAACAGCATCTGAAAAGCTAAAGTAGAAGTTCAAGGCCATTCTAGGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCATCTGAAAAGCTAAAGTAGAAGTTCAAGGCCATTCTAGGCCA  750

seq1  TAAAGTAAATTCCAGGACAGTCTGCACTATAGTGAGACTCTTATCTCCAA  798
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAGT-AATTCCAGGACAGTCTGCACTATAGTGAGACTCTTATCTCCA-  798

seq1  CAAAACAAAAAAAGACA-TAATACAAGAGTATATCTAGAAAACAATTT-G  846
        ||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  -CAAACAAAAAAAGACATTAATACAAGAGTATATCTAGAAAACAATTTGG  847

seq1  GCCTTTTCTCCTTTGTAATTTTCCTATATTTAGTTTTCTCTTAATATAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCTCCTTTGTAATTTTCCTATATTTAGTTTTCTCTTAATATAAG  897

seq1  ACAAATGTTTATGT-GATAGACTAGGCAGATCCAGGAAAACTGAACCGTG  945
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTTATGTGGATAGACTAGGCAGATCCAGGAAAACTGAACCGTG  947

seq1  TTCTTACCATACTGGCAAATAATAAGCCAGAAGTATGTCTTACATCTTTA  995
      |||||||||||||||||||||||||| ||| ||| |||||||||||||||
seq2  TTCTTACCATACTGGCAAATAATAAG-CAG-AGTTTGTCTTACATCTTTA  995

seq1  ACAATGAAAGACAAGTAAGATCCCCTTGGGATAGGATAACACTGATCTCA  1045
      |||  ||||||||||||||||||||||||||  |||| ||||||||||  
seq2  ACATGGAAAGACAAGTAAGATCCCCTTGGGAAGGGATTACACTGATCTTG  1045

seq1  AAATATTTCCTGGGA--GTGAGGTCA-GCACA-GCAGCATATTTTATTGG  1091
      |||||||||||||||  ||||| ||| ||||| ||||| ||||||||| |
seq2  AAATATTTCCTGGGAATGTGAGTTCAGGCACACGCAGCCTATTTTATTTG  1095

seq1  C---TTCTTTTTCCTTGAGCTAT-CAAAAGTTGTGATCT--TCTAGTGCT  1135
      |    |||||||| | ||||||| |||||||   |||||  |||||||||
seq2  CCTTCTCTTTTTCTTGGAGCTATACAAAAGTGTGGATCTTCTCTAGTGCT  1145

seq1  TCA-AGTA-ATTT  1146
      ||| |||| ||||
seq2  TCAGAGTATATTT  1158